Wall clock time and date at job start Sat Apr 11 2020 05:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29026 * 124.91862 * 2 1 4 4 C 1.31785 * 117.12732 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.74901 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47214 * 305.02326 * 5 4 3 7 7 C 1.50694 * 109.46877 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00654 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00091 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00361 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.45307 * 35.03406 * 10 9 7 12 12 C 1.53044 * 109.46189 * 275.06459 * 10 9 7 13 13 C 1.52755 * 109.38132 * 301.22024 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08000 * 119.99888 * 152.17192 * 15 14 13 17 17 C 1.38811 * 119.99955 * 332.17173 * 15 14 13 18 18 N 1.31614 * 120.00254 * 342.76805 * 17 15 14 19 19 Si 1.86801 * 119.99678 * 162.77313 * 17 15 14 20 20 H 1.48501 * 109.46669 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.46948 * 299.99298 * 19 17 15 22 22 H 1.48498 * 109.47140 * 59.99949 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 C 1.53046 * 109.46379 * 154.99790 * 10 9 7 25 25 H 1.08995 * 109.52949 * 178.62445 * 24 10 9 26 26 O 1.42898 * 109.49343 * 298.70602 * 24 10 9 27 27 C 1.33644 * 114.49871 * 0.23359 * 4 3 2 28 28 S 1.70977 * 124.91371 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46852 * 90.00005 * 1 2 3 30 30 H 1.08998 * 109.47143 * 210.00334 * 1 2 3 31 31 H 1.09005 * 109.46940 * 330.00377 * 1 2 3 32 32 H 1.09007 * 109.46480 * 185.02550 * 5 4 3 33 33 H 1.08997 * 109.46999 * 65.02927 * 5 4 3 34 34 H 1.09004 * 109.46722 * 60.00591 * 6 5 4 35 35 H 1.08997 * 109.47628 * 300.00216 * 6 5 4 36 36 H 0.97006 * 119.99741 * 359.97438 * 9 7 6 37 37 H 1.09007 * 109.49256 * 61.29397 * 12 10 9 38 38 H 1.08998 * 109.49776 * 181.36062 * 12 10 9 39 39 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 40 40 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 41 41 H 0.96995 * 120.00322 * 180.02562 * 18 17 15 42 42 H 1.09004 * 109.58525 * 66.43417 * 23 14 13 43 43 H 1.08999 * 109.58786 * 186.85311 * 23 14 13 44 44 H 0.96702 * 113.99942 * 179.83960 * 26 24 10 45 45 H 1.07993 * 126.03788 * 179.76691 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.2335 2.9494 -1.1820 7 6 5.2134 4.0942 -1.1828 8 8 6.0660 4.1634 -0.3230 9 7 5.1425 5.0413 -2.1390 10 6 6.0954 6.1540 -2.1402 11 1 7.0656 5.8014 -1.7900 12 6 5.5892 7.2599 -1.2112 13 6 4.2156 7.7310 -1.6853 14 7 4.3058 8.1237 -3.0982 15 6 3.8828 9.3603 -3.5071 16 1 4.3265 9.8226 -4.3764 17 6 2.8838 10.0196 -2.8040 18 7 2.1126 9.3507 -1.9733 19 14 2.6341 11.8561 -3.0371 20 1 1.5121 12.3157 -2.1797 21 1 3.8756 12.5766 -2.6569 22 1 2.3155 12.1356 -4.4604 23 6 4.8641 7.1666 -4.0632 24 6 6.2356 6.7039 -3.5615 25 1 6.9258 7.5475 -3.5594 26 8 6.7373 5.6793 -4.4220 27 6 3.9355 -0.4007 -0.0040 28 16 2.4856 -1.4020 0.0006 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 5.5449 1.6351 -0.0894 33 1 4.4369 2.5833 0.9312 34 1 3.2193 3.3388 -1.0925 35 1 4.3273 2.3907 -2.1131 36 1 4.4608 4.9858 -2.8270 37 1 5.5119 6.8740 -0.1947 38 1 6.2857 8.0981 -1.2302 39 1 3.8978 8.5856 -1.0881 40 1 3.4964 6.9191 -1.5769 41 1 1.4143 9.8113 -1.4824 42 1 4.1989 6.3078 -4.1527 43 1 4.9740 7.6490 -5.0345 44 1 6.8491 5.9575 -5.3413 45 1 4.9545 -0.7582 -0.0079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100025346.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:06 Heat of formation + Delta-G solvation = -28.275916 kcal Electronic energy + Delta-G solvation = -27305.498714 eV Core-core repulsion = 23450.115663 eV Total energy + Delta-G solvation = -3855.383050 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.24225 -39.65549 -37.90626 -35.43822 -34.12168 -33.83658 -31.86989 -31.27031 -30.07185 -28.69742 -28.36814 -25.72100 -24.90399 -22.71303 -22.24235 -21.81036 -20.36856 -19.85596 -18.68520 -17.66384 -17.19241 -16.93617 -16.45124 -15.60159 -15.38480 -15.24759 -14.92297 -14.88852 -14.30705 -13.97309 -13.92045 -13.60884 -13.56456 -13.22771 -13.12703 -12.75575 -12.59483 -12.42692 -12.21271 -11.98377 -11.85848 -11.66150 -11.54951 -11.16665 -11.00846 -10.87732 -10.64335 -10.40828 -10.19207 -9.94716 -9.82437 -9.79989 -9.60572 -9.45158 -9.41829 -8.85128 -8.56336 -8.48864 -6.77277 -5.86354 -3.30604 0.51489 1.15539 1.52208 2.60251 3.03810 3.34042 3.40729 3.41267 3.60241 3.87307 4.36995 4.52798 4.70112 4.92620 5.00038 5.06072 5.13360 5.17427 5.26465 5.28805 5.36230 5.47304 5.47771 5.59089 5.61171 5.67530 5.71793 5.92683 5.99072 6.03725 6.09268 6.16969 6.28880 6.46046 6.57446 6.66012 6.72780 7.00314 7.29405 7.59362 7.60225 7.71517 7.91965 7.94970 8.36050 8.63105 9.11734 9.74149 10.29516 11.21733 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.002566 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.062773 B =10909.696915 C =12145.839212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.466 5.466 4 C 0.078 3.922 5 C -0.026 4.026 6 C -0.132 4.132 7 C 0.515 3.485 8 O -0.555 6.555 9 N -0.705 5.705 10 C 0.166 3.834 11 H 0.077 0.923 12 C -0.153 4.153 13 C 0.172 3.828 14 N -0.587 5.587 15 C -0.261 4.261 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.290 1.290 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.119 3.881 24 C 0.075 3.925 25 H 0.065 0.935 26 O -0.571 6.571 27 C -0.260 4.260 28 S 0.100 5.900 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.402 0.598 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.022 0.978 41 H 0.256 0.744 42 H 0.023 0.977 43 H 0.058 0.942 44 H 0.373 0.627 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -19.946 1.316 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.225 4.225 3 N -0.181 5.181 4 C -0.054 4.054 5 C -0.067 4.067 6 C -0.173 4.173 7 C 0.302 3.698 8 O -0.434 6.434 9 N -0.356 5.356 10 C 0.061 3.939 11 H 0.096 0.904 12 C -0.193 4.193 13 C 0.047 3.953 14 N -0.311 5.311 15 C -0.390 4.390 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.734 3.266 20 H -0.216 1.216 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.009 4.009 24 C 0.014 3.986 25 H 0.083 0.917 26 O -0.375 6.375 27 C -0.398 4.398 28 S 0.354 5.646 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.237 0.763 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.040 0.960 43 H 0.077 0.923 44 H 0.219 0.781 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.078 -20.736 2.578 20.923 hybrid contribution 0.099 1.950 -0.997 2.192 sum 1.177 -18.786 1.581 18.889 Atomic orbital electron populations 1.20469 0.85105 1.04286 1.04066 1.27095 1.01827 0.90753 1.02861 1.66109 1.04567 1.31446 1.16002 1.20378 0.90104 0.94343 1.00554 1.19920 0.95494 0.91751 0.99521 1.21538 1.00510 0.95304 0.99911 1.20496 0.84963 0.83124 0.81248 1.90653 1.37646 1.77588 1.37528 1.45947 1.34833 1.24676 1.30113 1.20804 0.92596 0.86636 0.93848 0.90450 1.22513 1.01751 0.96887 0.98158 1.20698 0.90243 0.99290 0.85107 1.43988 1.72221 1.12961 1.01917 1.19107 1.14495 0.92205 1.13200 0.91664 1.25046 0.95398 0.98681 1.00162 1.70020 1.19434 1.34415 1.30289 0.86353 0.77348 0.85336 0.77602 1.21567 1.20944 1.20864 1.21530 0.91905 0.93362 0.94059 1.22756 0.96922 0.89178 0.89709 0.91677 1.86481 1.87813 1.40440 1.22801 1.26819 1.03022 0.95625 1.14381 1.83906 0.98326 1.13221 1.69131 0.89428 0.90176 0.89024 0.89507 0.89176 0.87972 0.89355 0.76255 0.91813 0.91624 0.89291 0.96036 0.93426 0.95972 0.92341 0.78057 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.01 0.38 -0.17 16 2 C 0.05 0.54 7.39 -13.46 -0.10 0.44 16 3 N -0.47 -5.99 10.34 -8.06 -0.08 -6.08 16 4 C 0.08 0.94 6.08 -84.22 -0.51 0.43 16 5 C -0.03 -0.33 5.00 -27.88 -0.14 -0.47 16 6 C -0.13 -1.78 5.60 -27.89 -0.16 -1.93 16 7 C 0.52 8.62 7.79 -10.99 -0.09 8.53 16 8 O -0.56 -10.83 15.65 5.56 0.09 -10.74 16 9 N -0.70 -11.98 4.16 -53.76 -0.22 -12.20 16 10 C 0.17 3.01 2.47 -67.89 -0.17 2.84 16 11 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 12 C -0.15 -3.04 5.75 -26.83 -0.15 -3.19 16 13 C 0.17 4.02 5.03 -3.94 -0.02 4.00 16 14 N -0.59 -13.94 3.00 -172.58 -0.52 -14.46 16 15 C -0.26 -6.87 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 17 C 0.01 0.18 4.91 -17.43 -0.09 0.09 16 18 N -0.90 -25.44 11.19 55.49 0.62 -24.81 16 19 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.12 2.30 5.85 -3.71 -0.02 2.28 16 24 C 0.08 1.28 3.36 -26.61 -0.09 1.19 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 O -0.57 -8.56 13.21 -35.23 -0.47 -9.03 16 27 C -0.26 -2.59 11.07 29.12 0.32 -2.27 16 28 S 0.10 0.86 23.18 -107.50 -2.49 -1.63 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.03 7.98 -51.92 -0.41 0.61 16 33 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.10 1.43 8.08 -51.93 -0.42 1.01 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 6.60 6.87 -40.82 -0.28 6.32 16 37 H 0.06 1.28 8.14 -51.92 -0.42 0.85 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 40 H 0.02 0.53 7.74 -51.93 -0.40 0.13 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.02 0.44 6.64 -51.93 -0.34 0.09 16 43 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 44 H 0.37 4.01 9.08 45.56 0.41 4.42 16 45 H 0.18 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 379.27 15.07 5.72 5.72 Total: -1.00 -32.36 379.27 -9.28 -41.64 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.92 Total: 10.69 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -0.98 Total: 4.75 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.20 Total: -57.55 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.38 Total: -19.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.36 -9.28 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100025346.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.365 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds