Wall clock time and date at job start Sat Apr 11 2020 05:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29031 * 124.91322 * 2 1 4 4 C 1.31782 * 117.12276 * 179.81357 * 3 2 1 5 5 C 1.50703 * 122.74625 * 180.22625 * 4 3 2 6 6 C 1.52999 * 109.46988 * 305.25932 * 5 4 3 7 7 C 1.50703 * 109.46988 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99721 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99892 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00252 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45634 * 324.98028 * 10 9 7 12 12 C 1.53044 * 109.45679 * 84.92843 * 10 9 7 13 13 C 1.53199 * 109.30881 * 181.38900 * 12 10 9 14 14 N 1.46918 * 108.77608 * 305.36565 * 13 12 10 15 15 C 1.36936 * 120.63545 * 233.63027 * 14 13 12 16 16 H 1.08004 * 119.99675 * 27.66768 * 15 14 13 17 17 C 1.38814 * 120.00587 * 207.66751 * 15 14 13 18 18 N 1.31618 * 119.99399 * 17.36261 * 17 15 14 19 19 Si 1.86796 * 120.00258 * 197.36312 * 17 15 14 20 20 H 1.48495 * 109.47280 * 89.99976 * 19 17 15 21 21 H 1.48494 * 109.47243 * 209.99999 * 19 17 15 22 22 H 1.48507 * 109.47070 * 329.99852 * 19 17 15 23 23 C 1.46929 * 118.74025 * 53.61168 * 14 13 12 24 24 C 1.53032 * 109.46640 * 205.00069 * 10 9 7 25 25 H 1.08998 * 109.49597 * 298.56964 * 24 10 9 26 26 O 1.42900 * 109.49502 * 58.65964 * 24 10 9 27 27 C 1.33635 * 114.50097 * 0.46649 * 4 3 2 28 28 S 1.70975 * 124.91855 * 180.29801 * 2 1 3 29 29 H 1.09002 * 109.46651 * 179.72567 * 1 2 3 30 30 H 1.08996 * 109.47226 * 299.71831 * 1 2 3 31 31 H 1.08994 * 109.47209 * 59.72648 * 1 2 3 32 32 H 1.08995 * 109.47697 * 65.26675 * 5 4 3 33 33 H 1.09004 * 109.46660 * 185.26474 * 5 4 3 34 34 H 1.08995 * 109.47508 * 300.00858 * 6 5 4 35 35 H 1.09002 * 109.46566 * 60.01074 * 6 5 4 36 36 H 0.97004 * 119.99974 * 0.02562 * 9 7 6 37 37 H 1.08995 * 109.50267 * 301.34196 * 12 10 9 38 38 H 1.09003 * 109.49801 * 61.44332 * 12 10 9 39 39 H 1.09001 * 109.58092 * 185.58232 * 13 12 10 40 40 H 1.08997 * 109.70153 * 65.22830 * 13 12 10 41 41 H 0.96999 * 119.99430 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.59190 * 186.60297 * 23 14 13 43 43 H 1.08997 * 109.58270 * 66.17304 * 23 14 13 44 44 H 0.96702 * 113.99858 * 179.97438 * 26 24 10 45 45 H 1.08001 * 126.03969 * 179.71659 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0038 5 6 4.5306 2.0248 0.0093 6 6 4.2330 2.9560 -1.1676 7 6 5.2120 4.1016 -1.1618 8 8 6.0642 4.1666 -0.3013 9 7 5.1406 5.0539 -2.1127 10 6 6.0927 6.1674 -2.1075 11 1 6.3290 6.4381 -1.0784 12 6 7.3740 5.7459 -2.8305 13 6 8.3801 6.9006 -2.7927 14 7 7.7419 8.1023 -3.3469 15 6 8.3317 8.7974 -4.3687 16 1 8.9824 8.2875 -5.0637 17 6 8.0933 10.1575 -4.5114 18 7 7.5980 10.8477 -3.5061 19 14 8.4754 11.0080 -6.1300 20 1 7.2799 10.9589 -7.0094 21 1 8.8415 12.4236 -5.8710 22 1 9.6089 10.3177 -6.7964 23 6 6.4585 8.5439 -2.7843 24 6 5.4739 7.3709 -2.8221 25 1 5.2603 7.1084 -3.8582 26 8 4.2615 7.7444 -2.1645 27 6 3.9355 -0.4004 -0.0027 28 16 2.4857 -1.4019 -0.0073 29 1 -0.3633 -1.0277 -0.0049 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5180 -0.8875 32 1 4.4371 2.5785 0.9435 33 1 5.5448 1.6359 -0.0825 34 1 4.3265 2.4023 -2.1018 35 1 3.2188 3.3448 -1.0757 36 1 4.4587 5.0021 -2.8007 37 1 7.8016 4.8744 -2.3349 38 1 7.1426 5.4988 -3.8666 39 1 9.2546 6.6428 -3.3902 40 1 8.6838 7.0899 -1.7632 41 1 7.4317 11.7981 -3.6057 42 1 6.0650 9.3704 -3.3761 43 1 6.6032 8.8663 -1.7532 44 1 3.8144 8.5027 -2.5648 45 1 4.9546 -0.7579 -0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100025350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:13 Heat of formation + Delta-G solvation = -31.669201 kcal Electronic energy + Delta-G solvation = -26764.909484 eV Core-core repulsion = 22909.379290 eV Total energy + Delta-G solvation = -3855.530194 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34441 -39.61249 -37.88302 -35.25721 -34.38662 -34.01111 -32.22651 -31.44730 -29.50163 -28.87383 -28.54100 -25.90362 -24.64098 -22.83632 -22.30066 -21.63626 -20.09068 -19.97592 -19.36841 -17.78695 -17.25568 -16.61593 -16.56723 -15.95183 -15.61364 -15.35013 -15.13504 -14.81030 -14.19941 -13.90911 -13.79464 -13.60176 -13.50772 -13.42892 -13.11859 -12.92101 -12.62428 -12.51081 -12.18383 -12.01927 -11.95037 -11.67196 -11.66040 -11.22365 -11.13690 -10.84447 -10.77844 -10.39679 -10.19150 -10.01485 -9.92660 -9.81429 -9.70732 -9.50169 -9.31503 -8.97111 -8.70396 -8.52124 -6.78543 -5.87178 -3.30688 0.40272 1.04468 1.40753 2.47482 2.89354 3.32336 3.40133 3.41486 3.45430 3.74124 4.40938 4.55034 4.61957 4.80373 4.85023 4.94534 4.99320 5.06331 5.14740 5.29198 5.33617 5.41129 5.43873 5.47633 5.55262 5.62820 5.78353 5.89676 5.92658 6.01853 6.04861 6.10979 6.26197 6.45684 6.50277 6.70937 6.89272 6.91845 7.12786 7.45943 7.46302 7.71687 7.80229 8.11246 8.35954 8.49701 9.11096 9.73969 10.30288 11.21221 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029198 B = 0.001937 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.728019 B =14451.232112 C =14822.414627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.469 5.469 4 C 0.076 3.924 5 C -0.028 4.028 6 C -0.131 4.131 7 C 0.512 3.488 8 O -0.547 6.547 9 N -0.716 5.716 10 C 0.162 3.838 11 H 0.087 0.913 12 C -0.138 4.138 13 C 0.145 3.855 14 N -0.589 5.589 15 C -0.255 4.255 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.148 3.852 24 C 0.072 3.928 25 H 0.051 0.949 26 O -0.573 6.573 27 C -0.259 4.259 28 S 0.106 5.894 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.255 0.745 42 H 0.094 0.906 43 H 0.029 0.971 44 H 0.375 0.625 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.898 -22.990 4.510 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.228 4.228 3 N -0.184 5.184 4 C -0.055 4.055 5 C -0.068 4.068 6 C -0.172 4.172 7 C 0.298 3.702 8 O -0.425 6.425 9 N -0.365 5.365 10 C 0.058 3.942 11 H 0.105 0.895 12 C -0.179 4.179 13 C 0.018 3.982 14 N -0.313 5.313 15 C -0.384 4.384 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.203 1.203 23 C 0.021 3.979 24 C 0.011 3.989 25 H 0.069 0.931 26 O -0.377 6.377 27 C -0.398 4.398 28 S 0.360 5.640 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.230 0.770 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.222 0.778 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.604 -23.833 5.513 27.991 hybrid contribution 0.333 1.637 -1.544 2.275 sum -13.272 -22.196 3.969 26.164 Atomic orbital electron populations 1.20438 0.85119 1.03478 1.04643 1.27093 1.01804 0.90882 1.02989 1.66063 1.04572 1.31522 1.16276 1.20358 0.90054 0.94346 1.00736 1.19929 0.95659 0.91715 0.99502 1.21548 1.00304 0.95278 1.00053 1.20552 0.85065 0.83373 0.81208 1.90691 1.37485 1.77060 1.37289 1.46113 1.34923 1.25123 1.30352 1.20971 0.88174 0.83960 1.01129 0.89492 1.22405 0.95813 0.99756 0.99899 1.20940 0.93739 0.86496 0.97041 1.44011 1.19136 1.28131 1.40048 1.19219 1.26377 0.89837 1.03011 0.91341 1.25086 1.00970 0.96116 0.97545 1.70034 1.48623 1.07114 1.28821 0.86253 0.78138 0.78755 0.83418 1.21423 1.21702 1.20347 1.21422 0.84712 0.93331 0.98445 1.22970 0.85672 0.96293 0.93960 0.93118 1.86420 1.38337 1.53314 1.59636 1.26841 1.03148 0.95654 1.14154 1.83959 0.98207 1.13064 1.68784 0.90301 0.89308 0.89265 0.89186 0.89365 0.89341 0.88192 0.76991 0.91846 0.92091 0.92158 0.95827 0.93479 0.88827 0.95249 0.77791 0.80477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.03 16 2 C 0.05 0.44 7.39 -13.45 -0.10 0.34 16 3 N -0.47 -5.21 10.34 -8.05 -0.08 -5.29 16 4 C 0.08 0.81 6.08 -84.23 -0.51 0.30 16 5 C -0.03 -0.31 5.00 -27.88 -0.14 -0.45 16 6 C -0.13 -1.49 5.60 -27.88 -0.16 -1.65 16 7 C 0.51 7.76 7.79 -10.99 -0.09 7.67 16 8 O -0.55 -10.28 15.64 5.56 0.09 -10.19 16 9 N -0.72 -10.81 4.92 -53.77 -0.26 -11.07 16 10 C 0.16 2.95 2.12 -67.89 -0.14 2.81 16 11 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 12 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 13 C 0.14 3.07 6.52 -3.71 -0.02 3.04 16 14 N -0.59 -14.47 2.99 -172.32 -0.52 -14.99 16 15 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 16 H 0.07 1.80 7.89 -52.48 -0.41 1.38 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -25.58 11.19 55.49 0.62 -24.96 16 19 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.15 3.44 4.94 -3.71 -0.02 3.42 16 24 C 0.07 1.35 3.14 -26.62 -0.08 1.27 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 O -0.57 -9.91 13.16 -35.23 -0.46 -10.37 16 27 C -0.26 -2.29 11.07 29.12 0.32 -1.96 16 28 S 0.11 0.78 23.17 -107.50 -2.49 -1.71 16 29 H 0.08 0.25 8.12 -51.93 -0.42 -0.17 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 33 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.12 8.07 -51.93 -0.42 0.71 16 36 H 0.40 5.07 8.60 -40.82 -0.35 4.71 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.38 5.21 9.08 45.56 0.41 5.63 16 45 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -32.93 383.48 -9.39 -42.32 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.09 Total: 9.26 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.94 Total: 5.10 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.24 Total: -56.31 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.38 Total: -20.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.49 Total: -1.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.93 -9.39 -42.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100025350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.656 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds