Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46922 * 2 1 4 4 N 1.30939 * 122.90226 * 269.96152 * 3 2 1 5 5 C 1.29433 * 117.36325 * 180.02562 * 4 3 2 6 6 S 1.70952 * 110.38991 * 359.72596 * 5 4 3 7 7 C 1.35652 * 122.90223 * 90.00032 * 3 2 1 8 8 C 1.46681 * 126.13495 * 359.96859 * 7 3 2 9 9 O 1.21689 * 119.99676 * 359.97438 * 8 7 3 10 10 N 1.34778 * 120.00326 * 179.97438 * 8 7 3 11 11 C 1.46499 * 120.00018 * 180.27000 * 10 8 7 12 12 C 1.53002 * 109.47178 * 179.72312 * 11 10 8 13 13 C 1.53002 * 109.50769 * 60.00223 * 12 11 10 14 14 C 1.53293 * 109.51241 * 180.10212 * 12 11 10 15 15 N 1.47147 * 108.38470 * 172.22577 * 14 12 11 16 16 C 1.36934 * 120.98280 * 129.44264 * 15 14 12 17 17 H 1.08003 * 120.00329 * 206.24155 * 16 15 14 18 18 C 1.38816 * 119.99723 * 26.24318 * 16 15 14 19 19 N 1.31620 * 120.00314 * 16.91315 * 18 16 15 20 20 Si 1.86801 * 120.00070 * 196.91184 * 18 16 15 21 21 H 1.48499 * 109.46975 * 59.99765 * 20 18 16 22 22 H 1.48494 * 109.47473 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47147 * 300.00057 * 20 18 16 24 24 C 1.47152 * 118.03999 * 309.47027 * 15 14 12 25 25 C 1.53302 * 108.38496 * 50.52809 * 24 15 14 26 26 O 1.42954 * 109.51121 * 299.90390 * 12 11 10 27 27 H 1.09000 * 109.47285 * 60.00084 * 1 2 3 28 28 H 1.09000 * 109.46643 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47027 * 299.99402 * 1 2 3 30 30 H 1.09000 * 109.47027 * 240.00598 * 2 1 3 31 31 H 1.08994 * 109.47442 * 120.00321 * 2 1 3 32 32 H 1.07999 * 124.80808 * 180.02562 * 5 4 3 33 33 H 0.96996 * 120.00090 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47532 * 299.72840 * 11 10 8 35 35 H 1.09006 * 109.46579 * 59.72605 * 11 10 8 36 36 H 1.08997 * 109.47070 * 60.00437 * 13 12 11 37 37 H 1.09004 * 109.46977 * 179.97438 * 13 12 11 38 38 H 1.08995 * 109.47310 * 300.00185 * 13 12 11 39 39 H 1.08998 * 109.68470 * 291.95347 * 14 12 11 40 40 H 1.09003 * 109.67919 * 52.46782 * 14 12 11 41 41 H 0.96993 * 120.00234 * 180.02562 * 19 18 16 42 42 H 1.08992 * 109.68544 * 170.25298 * 24 15 14 43 43 H 1.09001 * 109.68128 * 290.81196 * 24 15 14 44 44 H 1.09006 * 109.50710 * 67.62618 * 25 24 15 45 45 H 1.08993 * 109.51295 * 187.72211 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2701 2.0912 -1.0994 5 6 2.6999 3.3057 -0.9744 6 16 2.8382 3.7216 0.6780 7 6 2.2779 2.1156 1.1389 8 6 2.1024 1.6211 2.5087 9 8 1.7008 0.4883 2.6997 10 7 2.3859 2.4211 3.5556 11 6 2.2162 1.9251 4.9236 12 6 2.6105 3.0209 5.9159 13 6 1.7196 4.2466 5.7042 14 6 2.4357 2.5020 7.3478 15 7 2.9950 3.4990 8.2742 16 6 2.2709 3.9504 9.3452 17 1 2.4681 4.9294 9.7564 18 6 1.2833 3.1496 9.9023 19 7 1.2565 1.8599 9.6409 20 14 -0.0076 3.9024 11.0232 21 1 -0.7650 4.9404 10.2787 22 1 -0.9409 2.8435 11.4845 23 1 0.6571 4.5218 12.1978 24 6 4.3553 3.9972 8.0156 25 6 4.4366 4.4432 6.5511 26 8 3.9779 3.3830 5.7090 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.9331 3.9649 -1.7975 33 1 2.7056 3.3241 3.4033 34 1 1.1740 1.6483 5.0831 35 1 2.8513 1.0522 5.0749 36 1 0.6774 3.9702 5.8640 37 1 2.0007 5.0267 6.4118 38 1 1.8457 4.6161 4.6866 39 1 1.3762 2.3579 7.5593 40 1 2.9649 1.5559 7.4625 41 1 0.5662 1.3005 10.0299 42 1 4.5669 4.8433 8.6693 43 1 5.0783 3.2021 8.1977 44 1 3.8092 5.3222 6.4030 45 1 5.4692 4.6868 6.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107985979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -11.196262 kcal Electronic energy + Delta-G solvation = -27941.067361 eV Core-core repulsion = 24086.424940 eV Total energy + Delta-G solvation = -3854.642421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.58312 -39.52663 -38.60134 -35.07546 -34.39710 -33.52810 -32.00508 -31.29922 -29.98847 -27.99993 -26.88211 -26.19970 -25.29621 -23.38621 -23.27419 -21.95042 -20.99745 -19.67797 -18.67673 -18.50079 -17.27260 -16.78711 -16.06484 -15.77042 -15.48148 -15.09674 -14.85568 -14.46412 -14.41914 -14.26506 -14.03938 -14.00037 -13.64061 -13.54641 -13.09709 -12.83073 -12.58008 -12.55089 -12.07856 -11.96883 -11.64224 -11.42753 -11.23481 -11.05695 -10.98655 -10.85068 -10.71728 -10.35839 -10.30956 -10.21338 -10.02815 -9.82653 -9.78940 -9.58554 -9.16366 -9.10346 -8.89620 -8.57148 -6.78351 -5.88105 -3.31597 0.02914 0.95080 1.32667 2.26701 3.10525 3.15249 3.32359 3.38931 3.39305 3.88322 4.18659 4.40414 4.68915 4.75168 4.90792 5.09321 5.27791 5.30035 5.33827 5.37222 5.41506 5.46892 5.62497 5.82744 5.87201 5.88877 5.89162 5.94818 6.02393 6.08507 6.12247 6.19467 6.27161 6.38673 6.49571 6.60800 6.70319 6.77915 7.02443 7.31972 7.41604 7.51033 7.66992 7.82227 8.15273 8.29277 9.07044 9.70083 10.27119 11.19930 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017922 B = 0.002911 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.973330 B = 9615.975687 C =10416.793373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.061 4.061 3 C 0.144 3.856 4 N -0.473 5.473 5 C 0.031 3.969 6 S 0.162 5.838 7 C -0.285 4.285 8 C 0.591 3.409 9 O -0.522 6.522 10 N -0.710 5.710 11 C 0.140 3.860 12 C 0.077 3.923 13 C -0.162 4.162 14 C 0.161 3.839 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.385 6.385 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.205 0.795 33 H 0.400 0.600 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.257 0.743 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.048 0.952 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.681 4.245 -19.535 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C 0.006 3.994 4 N -0.186 5.186 5 C -0.265 4.265 6 S 0.417 5.583 7 C -0.409 4.409 8 C 0.375 3.625 9 O -0.401 6.401 10 N -0.361 5.361 11 C 0.017 3.983 12 C 0.036 3.964 13 C -0.220 4.220 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.222 0.778 33 H 0.235 0.765 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.652 3.991 -19.423 20.006 hybrid contribution -0.800 0.317 0.646 1.076 sum 1.852 4.308 -18.777 19.354 Atomic orbital electron populations 1.21598 0.93825 1.02215 1.01778 1.20438 0.96766 0.88252 1.04572 1.20746 0.95441 0.98329 0.84897 1.66116 1.15021 1.06172 1.31329 1.28703 1.01261 0.96079 1.00431 1.84054 1.58928 1.12052 1.03296 1.25610 1.17276 0.98661 0.99391 1.16666 0.78204 0.85263 0.82323 1.90797 1.46389 1.18063 1.84825 1.45899 1.67003 1.16917 1.06244 1.21447 1.02081 0.96737 0.78045 1.22571 0.82082 0.93859 0.97881 1.22216 1.00324 0.99247 1.00207 1.21282 1.01586 0.90669 0.83075 1.43983 1.10559 1.48896 1.27946 1.19114 1.14203 0.97910 1.07313 0.91444 1.25039 1.01170 0.94788 0.98446 1.69998 1.34511 1.03026 1.46968 0.86359 0.81602 0.78213 0.80529 1.20967 1.21512 1.20854 1.21596 0.88606 0.97831 0.93682 1.23048 0.98165 0.89652 0.92348 1.87809 1.26729 1.54879 1.61015 0.93044 0.91773 0.92298 0.90447 0.87520 0.77843 0.76503 0.89646 0.90419 0.91772 0.90666 0.94104 0.88484 0.95182 0.93332 0.92008 0.95622 0.93365 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.89 37.16 0.37 -1.13 16 2 C -0.06 -0.72 5.75 -27.88 -0.16 -0.88 16 3 C 0.14 1.80 6.04 -83.90 -0.51 1.30 16 4 N -0.47 -5.42 10.50 -11.53 -0.12 -5.54 16 5 C 0.03 0.26 12.22 51.75 0.63 0.89 16 6 S 0.16 1.47 22.35 -107.50 -2.40 -0.93 16 7 C -0.29 -3.63 6.48 -37.10 -0.24 -3.87 16 8 C 0.59 8.86 7.78 -12.85 -0.10 8.76 16 9 O -0.52 -9.05 14.27 5.20 0.07 -8.98 16 10 N -0.71 -10.32 5.15 -61.61 -0.32 -10.63 16 11 C 0.14 2.34 4.82 -4.04 -0.02 2.32 16 12 C 0.08 1.40 0.76 -90.47 -0.07 1.33 16 13 C -0.16 -2.71 7.92 37.16 0.29 -2.41 16 14 C 0.16 3.65 4.11 -3.54 -0.01 3.63 16 15 N -0.59 -14.06 2.57 -171.83 -0.44 -14.50 16 16 C -0.26 -6.69 9.65 -15.06 -0.15 -6.83 16 17 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 18 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 19 N -0.90 -25.23 11.14 55.49 0.62 -24.62 16 20 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 C 0.11 2.19 6.74 -3.53 -0.02 2.16 16 25 C 0.05 0.77 6.60 37.31 0.25 1.01 16 26 O -0.38 -6.90 9.98 -35.23 -0.35 -7.25 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 1.43 6.01 -51.93 -0.31 1.12 16 32 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.40 5.26 6.38 -40.82 -0.26 5.00 16 34 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 38 H 0.04 0.57 6.86 -51.93 -0.36 0.21 16 39 H 0.10 2.43 6.13 -51.93 -0.32 2.12 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.78 6.26 -51.93 -0.32 0.45 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -30.56 371.96 -8.69 -39.25 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.50 Total: 5.35 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 0.18 Total: 6.31 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.26 Total: -55.29 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.28 Total: -16.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.56 -8.69 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107985979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.057 kcal (2) G-P(sol) polarization free energy of solvation -30.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds