Wall clock time and date at job start Sat Apr 11 2020 05:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47150 * 2 1 4 4 N 1.30178 * 126.79862 * 275.33900 * 3 2 1 5 5 O 1.20922 * 111.60410 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.56730 * 359.97438 * 5 4 3 7 7 C 1.35451 * 106.44653 * 0.02562 * 6 5 4 8 8 C 1.50702 * 128.01027 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47230 * 105.44561 * 8 7 6 10 10 C 1.46905 * 111.00188 * 288.52387 * 9 8 7 11 11 C 1.53235 * 109.34453 * 172.74531 * 10 9 8 12 12 N 1.47076 * 108.52081 * 53.82598 * 11 10 9 13 13 C 1.34782 * 120.88259 * 128.79103 * 12 11 10 14 14 O 1.21276 * 120.00450 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.99497 * 0.02871 * 13 12 11 16 16 S 1.80999 * 109.46774 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08008 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00200 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99957 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99682 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47378 * 89.99689 * 21 19 17 23 23 H 1.48503 * 109.46919 * 210.00050 * 21 19 17 24 24 H 1.48501 * 109.47022 * 329.99636 * 21 19 17 25 25 C 1.47080 * 118.24019 * 308.82144 * 12 11 10 26 26 C 1.46899 * 111.00468 * 164.22262 * 9 8 7 27 27 H 1.09002 * 109.47072 * 59.99818 * 1 2 3 28 28 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46861 * 300.00014 * 1 2 3 30 30 H 1.08995 * 109.46962 * 240.00096 * 2 1 3 31 31 H 1.09004 * 109.46949 * 119.99658 * 2 1 3 32 32 H 1.08003 * 126.78175 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47165 * 225.45042 * 8 7 6 34 34 H 1.09008 * 109.47129 * 345.44697 * 8 7 6 35 35 H 1.09007 * 109.49281 * 292.70984 * 10 9 8 36 36 H 1.09003 * 109.49411 * 52.78388 * 10 9 8 37 37 H 1.09001 * 109.62385 * 294.12115 * 11 10 9 38 38 H 1.08991 * 109.79327 * 173.63435 * 11 10 9 39 39 H 1.08991 * 109.47126 * 299.99653 * 15 13 12 40 40 H 1.09002 * 109.46798 * 60.00141 * 15 13 12 41 41 H 0.97006 * 119.99923 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.62992 * 291.47008 * 25 12 11 43 43 H 1.09001 * 109.79062 * 170.98721 * 25 12 11 44 44 H 1.09007 * 109.48824 * 307.21685 * 26 9 8 45 45 H 1.09000 * 109.49230 * 67.26106 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2009 2.1883 -1.0379 5 8 2.6172 3.2789 -0.7223 6 6 2.7827 3.3781 0.6041 7 6 2.4131 2.1846 1.1271 8 6 2.4080 1.7676 2.5753 9 7 1.0259 1.7414 3.0724 10 6 0.4927 3.1025 3.2176 11 6 -0.9988 3.0294 3.5615 12 7 -1.1644 2.1674 4.7416 13 6 -1.8702 2.5862 5.8107 14 8 -1.9963 1.8625 6.7756 15 6 -2.5027 3.9541 5.8070 16 16 -3.3749 4.2197 7.3706 17 6 -3.9999 5.8447 7.1001 18 1 -3.7926 6.3554 6.1712 19 6 -4.7595 6.4682 8.0804 20 7 -5.2260 7.6824 7.8785 21 14 -5.1186 5.5847 9.6865 22 1 -4.0494 5.8918 10.6702 23 1 -6.4276 6.0400 10.2199 24 1 -5.1644 4.1200 9.4463 25 6 -0.5389 0.8363 4.7244 26 6 0.9345 0.9958 4.3348 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.1403 4.2397 1.1485 33 1 2.8467 0.7742 2.6689 34 1 2.9911 2.4789 3.1603 35 1 1.0254 3.6185 4.0165 36 1 0.6240 3.6463 2.2821 37 1 -1.5482 2.6075 2.7199 38 1 -1.3762 4.0279 3.7815 39 1 -1.7285 4.7121 5.6891 40 1 -3.2097 4.0252 4.9803 41 1 -5.7565 8.1183 8.5637 42 1 -1.0442 0.2036 3.9947 43 1 -0.6091 0.3828 5.7131 44 1 1.3863 0.0117 4.2096 45 1 1.4614 1.5408 5.1180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112629123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:00 Heat of formation + Delta-G solvation = 34.244272 kcal Electronic energy + Delta-G solvation = -27180.341513 eV Core-core repulsion = 23327.669541 eV Total energy + Delta-G solvation = -3852.671972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.22360 -40.13762 -38.23515 -36.04731 -34.66602 -32.69240 -32.46038 -31.58866 -31.30104 -29.67941 -28.14504 -25.66706 -25.23299 -24.70105 -23.87944 -21.82359 -21.45071 -21.01743 -19.12238 -17.89162 -17.82621 -17.61580 -16.92785 -15.96350 -15.63260 -15.56336 -15.32527 -15.25918 -14.97297 -14.84880 -14.45600 -13.91716 -13.84278 -13.79549 -13.39830 -12.97074 -12.88823 -12.84950 -12.78431 -12.23227 -12.02194 -11.80453 -11.71051 -11.62346 -11.56676 -11.36149 -11.25023 -11.09698 -11.02951 -10.61202 -10.16608 -9.87948 -9.81422 -9.51591 -9.02909 -8.96109 -8.52325 -8.50874 -6.94770 -6.31142 -4.03100 1.16421 1.88333 2.66284 2.88800 2.94214 3.14314 3.31130 3.48598 3.50992 3.57476 3.87785 4.19415 4.30793 4.37400 4.47993 4.63234 4.66705 4.75919 4.86845 4.93963 5.00542 5.01839 5.03155 5.07989 5.12038 5.15588 5.18117 5.30527 5.31900 5.36394 5.44284 5.59904 5.60409 5.67051 5.71440 5.72594 5.81779 5.84946 5.95087 6.04134 6.44356 6.55639 6.62496 7.42714 7.91838 7.99412 8.38777 8.39455 9.15053 10.78068 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.002369 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.166509 B =11814.430855 C =12471.426593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 C 0.042 3.958 4 N -0.369 5.369 5 O 0.097 5.903 6 C -0.057 4.057 7 C -0.190 4.190 8 C 0.132 3.868 9 N -0.531 5.531 10 C 0.041 3.959 11 C 0.114 3.886 12 N -0.620 5.620 13 C 0.534 3.466 14 O -0.519 6.519 15 C -0.121 4.121 16 S -0.142 6.142 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.119 3.881 26 C 0.043 3.957 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.213 0.787 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.271 0.729 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.339 -13.676 -15.653 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.118 4.118 4 N -0.074 5.074 5 O 0.033 5.967 6 C -0.140 4.140 7 C -0.194 4.194 8 C 0.005 3.995 9 N -0.256 5.256 10 C -0.088 4.088 11 C -0.010 4.010 12 N -0.356 5.356 13 C 0.322 3.678 14 O -0.394 6.394 15 C -0.272 4.272 16 S 0.084 5.916 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.004 4.004 26 C -0.085 4.085 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.230 0.770 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.105 0.895 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.563 -14.984 -15.801 27.976 hybrid contribution 0.517 1.335 0.918 1.700 sum 18.080 -13.649 -14.884 27.105 Atomic orbital electron populations 1.21704 0.93509 1.02138 1.02963 1.19868 0.96922 0.87854 1.03048 1.23470 1.00927 0.99264 0.88123 1.73859 1.16463 0.92798 1.24303 1.84840 1.61239 1.27402 1.23240 1.25836 1.03441 1.00565 0.84108 1.21102 1.06848 0.94157 0.97295 1.20221 0.89512 1.01671 0.88142 1.61872 1.19161 1.15722 1.28863 1.22511 0.95608 0.89436 1.01205 1.21796 0.95321 0.95798 0.88088 1.48119 1.53837 1.16872 1.16813 1.20303 0.77569 0.88370 0.81551 1.90687 1.59073 1.56337 1.33279 1.23303 1.02909 0.95826 1.05152 1.84798 1.65774 1.22747 1.18293 1.22302 1.38541 0.98652 1.07359 0.89409 1.24714 0.93945 0.94300 0.98346 1.69936 1.34199 1.12560 1.34967 0.86736 0.78696 0.82717 0.83716 1.19228 1.19923 1.15902 1.21588 0.91142 0.84574 1.03060 1.22517 0.97413 0.98822 0.89732 0.92970 0.92087 0.90904 0.90797 0.89791 0.77023 0.89279 0.93127 0.93863 0.89715 0.90693 0.88808 0.88678 0.88496 0.91920 0.91003 0.88543 0.89472 0.94012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.90 37.16 0.37 -0.72 16 2 C -0.04 -0.28 6.45 -27.88 -0.18 -0.46 16 3 C 0.04 0.37 6.58 -82.10 -0.54 -0.17 16 4 N -0.37 -3.92 12.07 33.42 0.40 -3.52 16 5 O 0.10 0.89 11.20 17.18 0.19 1.08 16 6 C -0.06 -0.37 11.87 29.74 0.35 -0.02 16 7 C -0.19 -1.38 5.00 -104.42 -0.52 -1.90 16 8 C 0.13 0.81 5.41 -4.98 -0.03 0.79 16 9 N -0.53 -3.99 4.58 -235.76 -1.08 -5.07 16 10 C 0.04 0.34 5.46 -3.70 -0.02 0.32 16 11 C 0.11 1.16 6.50 -3.61 -0.02 1.14 16 12 N -0.62 -8.02 3.01 -172.47 -0.52 -8.54 16 13 C 0.53 9.41 7.73 -10.98 -0.08 9.32 16 14 O -0.52 -11.00 15.32 5.56 0.09 -10.91 16 15 C -0.12 -2.32 4.52 36.01 0.16 -2.15 16 16 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 17 C -0.52 -14.84 10.04 30.94 0.31 -14.53 16 18 H 0.09 2.60 8.03 -52.48 -0.42 2.18 16 19 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 20 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 21 Si 0.86 21.64 27.74 -169.99 -4.72 16.92 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 25 C 0.12 1.27 6.59 -3.61 -0.02 1.24 16 26 C 0.04 0.35 5.60 -3.70 -0.02 0.32 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.50 8.06 -51.93 -0.42 0.08 16 32 H 0.21 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.09 0.47 7.83 -51.93 -0.41 0.06 16 34 H 0.05 0.28 8.06 -51.92 -0.42 -0.14 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.64 6.98 -51.93 -0.36 0.28 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.98 6.02 -51.93 -0.31 0.66 16 39 H 0.10 1.68 7.66 -51.92 -0.40 1.28 16 40 H 0.10 1.74 8.00 -51.91 -0.42 1.32 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 1.17 7.07 -51.93 -0.37 0.80 16 44 H 0.09 0.52 7.93 -51.92 -0.41 0.11 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -34.53 381.68 -8.34 -42.87 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.89 Total: -3.28 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.34 Total: -4.13 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.42 Total: -42.73 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.28 Total: -9.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.72 Total: 16.92 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.53 -8.34 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.111 kcal (2) G-P(sol) polarization free energy of solvation -34.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds