Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47150 * 2 1 4 4 N 1.30178 * 126.79862 * 275.33900 * 3 2 1 5 5 O 1.20922 * 111.60410 * 179.97438 * 4 3 2 6 6 C 1.34038 * 111.56730 * 359.97438 * 5 4 3 7 7 C 1.35451 * 106.44653 * 0.02562 * 6 5 4 8 8 C 1.50702 * 128.01027 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47230 * 105.44561 * 8 7 6 10 10 C 1.46905 * 111.00188 * 288.52387 * 9 8 7 11 11 C 1.53235 * 109.34453 * 172.74531 * 10 9 8 12 12 N 1.47076 * 108.52081 * 53.82598 * 11 10 9 13 13 C 1.34782 * 120.88259 * 128.79103 * 12 11 10 14 14 O 1.21276 * 120.00450 * 180.02562 * 13 12 11 15 15 C 1.50706 * 119.99497 * 0.02871 * 13 12 11 16 16 S 1.80999 * 109.46774 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99857 * 180.02562 * 16 15 13 18 18 H 1.08008 * 120.00232 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00200 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99957 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99682 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47378 * 89.99689 * 21 19 17 23 23 H 1.48503 * 109.46919 * 210.00050 * 21 19 17 24 24 H 1.48501 * 109.47022 * 329.99636 * 21 19 17 25 25 C 1.47080 * 118.24019 * 308.82144 * 12 11 10 26 26 C 1.46899 * 111.00468 * 164.22262 * 9 8 7 27 27 H 1.09002 * 109.47072 * 59.99818 * 1 2 3 28 28 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46861 * 300.00014 * 1 2 3 30 30 H 1.08995 * 109.46962 * 240.00096 * 2 1 3 31 31 H 1.09004 * 109.46949 * 119.99658 * 2 1 3 32 32 H 1.08003 * 126.78175 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47165 * 225.45042 * 8 7 6 34 34 H 1.09008 * 109.47129 * 345.44697 * 8 7 6 35 35 H 1.09007 * 109.49281 * 292.70984 * 10 9 8 36 36 H 1.09003 * 109.49411 * 52.78388 * 10 9 8 37 37 H 1.09001 * 109.62385 * 294.12115 * 11 10 9 38 38 H 1.08991 * 109.79327 * 173.63435 * 11 10 9 39 39 H 1.08991 * 109.47126 * 299.99653 * 15 13 12 40 40 H 1.09002 * 109.46798 * 60.00141 * 15 13 12 41 41 H 0.97006 * 119.99923 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.62992 * 291.47008 * 25 12 11 43 43 H 1.09001 * 109.79062 * 170.98721 * 25 12 11 44 44 H 1.09007 * 109.48824 * 307.21685 * 26 9 8 45 45 H 1.09000 * 109.49230 * 67.26106 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2009 2.1883 -1.0379 5 8 2.6172 3.2789 -0.7223 6 6 2.7827 3.3781 0.6041 7 6 2.4131 2.1846 1.1271 8 6 2.4080 1.7676 2.5753 9 7 1.0259 1.7414 3.0724 10 6 0.4927 3.1025 3.2176 11 6 -0.9988 3.0294 3.5615 12 7 -1.1644 2.1674 4.7416 13 6 -1.8702 2.5862 5.8107 14 8 -1.9963 1.8625 6.7756 15 6 -2.5027 3.9541 5.8070 16 16 -3.3749 4.2197 7.3706 17 6 -3.9999 5.8447 7.1001 18 1 -3.7926 6.3554 6.1712 19 6 -4.7595 6.4682 8.0804 20 7 -5.2260 7.6824 7.8785 21 14 -5.1186 5.5847 9.6865 22 1 -4.0494 5.8918 10.6702 23 1 -6.4276 6.0400 10.2199 24 1 -5.1644 4.1200 9.4463 25 6 -0.5389 0.8363 4.7244 26 6 0.9345 0.9958 4.3348 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.1403 4.2397 1.1485 33 1 2.8467 0.7742 2.6689 34 1 2.9911 2.4789 3.1603 35 1 1.0254 3.6185 4.0165 36 1 0.6240 3.6463 2.2821 37 1 -1.5482 2.6075 2.7199 38 1 -1.3762 4.0279 3.7815 39 1 -1.7285 4.7121 5.6891 40 1 -3.2097 4.0252 4.9803 41 1 -5.7565 8.1183 8.5637 42 1 -1.0442 0.2036 3.9947 43 1 -0.6091 0.3828 5.7131 44 1 1.3863 0.0117 4.2096 45 1 1.4614 1.5408 5.1180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112629123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = 10.984597 kcal Electronic energy + Delta-G solvation = -27181.350128 eV Core-core repulsion = 23327.669541 eV Total energy + Delta-G solvation = -3853.680587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.83550 -41.21460 -39.20237 -36.78878 -35.51713 -34.67716 -33.38423 -32.40737 -31.91993 -30.90950 -29.01280 -27.85437 -26.00555 -25.30989 -24.66228 -22.64894 -22.08247 -21.65622 -20.37281 -19.51763 -18.52521 -18.37788 -18.13281 -17.20255 -16.93024 -16.75736 -16.34050 -16.18316 -15.91152 -15.59338 -15.44880 -15.09897 -14.94790 -14.76781 -14.66777 -14.34245 -13.82058 -13.61581 -13.42263 -13.35266 -13.32864 -13.02003 -12.89281 -12.67040 -12.44243 -12.38639 -12.30440 -12.22642 -12.04426 -11.86412 -11.66458 -11.17627 -10.94014 -10.77786 -10.53199 -10.37189 -9.87100 -9.28448 -9.00860 -8.52070 -6.23069 0.63117 0.96824 1.29253 1.30865 1.45698 1.51140 1.53770 2.04608 2.24554 2.46647 2.66819 2.86267 2.91727 3.32768 3.50401 3.67408 3.86607 3.88425 4.03360 4.10803 4.16633 4.25486 4.28122 4.37220 4.39661 4.43773 4.47244 4.54319 4.60542 4.67447 4.74665 4.80032 4.83708 4.87326 4.88297 5.06386 5.07371 5.19797 5.26804 5.44709 5.47267 5.70235 5.95554 5.98509 6.10816 6.26112 6.93165 7.06743 7.42272 8.60305 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.002369 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.166509 B =11814.430855 C =12471.426593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.038 4.038 3 C 0.034 3.966 4 N -0.406 5.406 5 O 0.081 5.919 6 C -0.047 4.047 7 C -0.197 4.197 8 C 0.137 3.863 9 N -0.533 5.533 10 C 0.048 3.952 11 C 0.108 3.892 12 N -0.606 5.606 13 C 0.535 3.465 14 O -0.562 6.562 15 C -0.106 4.106 16 S -0.176 6.176 17 C -0.527 4.527 18 H 0.062 0.938 19 C 0.046 3.954 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.259 1.259 24 H -0.237 1.237 25 C 0.115 3.885 26 C 0.054 3.946 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.277 0.723 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.949 -14.912 -15.861 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.125 4.125 4 N -0.114 5.114 5 O 0.019 5.981 6 C -0.129 4.129 7 C -0.202 4.202 8 C 0.009 3.991 9 N -0.258 5.258 10 C -0.081 4.081 11 C -0.015 4.015 12 N -0.340 5.340 13 C 0.322 3.678 14 O -0.441 6.441 15 C -0.257 4.257 16 S 0.051 5.949 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.160 4.160 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.184 1.184 24 H -0.161 1.161 25 C -0.007 4.007 26 C -0.075 4.075 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.263 0.737 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.086 0.914 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.133 0.867 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.206 -16.210 -16.063 29.827 hybrid contribution 0.111 1.702 0.797 1.882 sum 19.317 -14.508 -15.266 28.578 Atomic orbital electron populations 1.21631 0.93771 1.02536 1.01695 1.19937 0.96561 0.87320 1.03826 1.23845 1.00442 0.99818 0.88439 1.73864 1.18235 0.93636 1.25657 1.84799 1.61507 1.27098 1.24654 1.26518 1.01806 1.01392 0.83154 1.21248 1.07252 0.94181 0.97483 1.20261 0.88581 1.02927 0.87283 1.61842 1.20406 1.15059 1.28447 1.22418 0.93877 0.90166 1.01593 1.22019 0.97253 0.95190 0.87041 1.48123 1.51939 1.17988 1.15993 1.19977 0.78098 0.87368 0.82310 1.90672 1.61111 1.57132 1.35163 1.23269 1.03010 0.97778 1.01649 1.84712 1.66854 1.20366 1.22955 1.22438 1.38450 1.00198 1.06396 0.91946 1.25558 0.93876 0.95003 1.01537 1.70014 1.35165 1.13920 1.36379 0.85874 0.79215 0.81437 0.79902 1.18644 1.18377 1.16077 1.21791 0.93074 0.83118 1.02690 1.22435 0.95123 1.00279 0.89624 0.94610 0.90871 0.91650 0.90930 0.88076 0.73674 0.87848 0.91868 0.94098 0.88594 0.89749 0.89107 0.87162 0.87316 0.91355 0.89706 0.90201 0.86738 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.90 71.98 0.71 -1.13 16 2 C -0.04 -0.48 6.45 29.85 0.19 -0.29 16 3 C 0.03 0.54 6.58 43.58 0.29 0.83 16 4 N -0.41 -8.29 12.07 -49.55 -0.60 -8.89 16 5 O 0.08 1.39 11.20 71.65 0.80 2.19 16 6 C -0.05 -0.48 11.87 67.18 0.80 0.31 16 7 C -0.20 -2.32 5.00 -19.74 -0.10 -2.42 16 8 C 0.14 1.17 5.41 85.56 0.46 1.63 16 9 N -0.53 -6.21 4.58 -899.80 -4.12 -10.33 16 10 C 0.05 0.66 5.46 86.38 0.47 1.13 16 11 C 0.11 1.96 6.50 86.35 0.56 2.52 16 12 N -0.61 -14.63 3.01 -817.96 -2.46 -17.09 16 13 C 0.54 18.39 7.73 87.66 0.68 19.06 16 14 O -0.56 -23.72 15.32 -3.02 -0.05 -23.77 16 15 C -0.11 -3.99 4.52 71.24 0.32 -3.67 16 16 S -0.18 -8.82 18.55 -56.49 -1.05 -9.87 16 17 C -0.53 -30.44 10.04 67.96 0.68 -29.76 16 18 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16 19 C 0.05 2.67 5.50 84.86 0.47 3.13 16 20 N -0.92 -55.53 13.97 21.65 0.30 -55.23 16 21 Si 0.91 44.73 27.74 68.60 1.90 46.63 16 22 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 25 C 0.12 2.20 6.59 86.35 0.57 2.77 16 26 C 0.05 0.68 5.60 86.38 0.48 1.16 16 27 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.89 8.06 -2.38 -0.02 0.87 16 32 H 0.25 0.51 8.06 -2.91 -0.02 0.49 16 33 H 0.10 0.64 7.83 -2.39 -0.02 0.62 16 34 H 0.06 0.43 8.06 -2.38 -0.02 0.41 16 35 H 0.04 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.10 1.15 6.98 -2.39 -0.02 1.13 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.72 6.02 -2.39 -0.01 1.71 16 39 H 0.11 3.79 7.66 -2.40 -0.02 3.78 16 40 H 0.11 3.82 8.00 -2.39 -0.02 3.80 16 41 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 42 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.85 7.07 -2.39 -0.02 1.83 16 44 H 0.11 0.89 7.93 -2.38 -0.02 0.87 16 45 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -76.14 381.68 2.27 -73.86 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: 0.95 Total: 7.19 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: 6.59 Total: -4.71 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -6.87 Total: -91.53 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.76 Total: -21.58 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.90 Total: 46.63 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.05 Total: -9.87 kcal Total: -76.14 2.27 -73.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112629123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.849 kcal (2) G-P(sol) polarization free energy of solvation -76.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds