Wall clock time and date at job start Sat Apr 11 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 S 1.70624 * 124.52474 * 270.02453 * 3 2 1 5 5 C 1.75828 * 91.56226 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45530 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46898 * 109.46947 * 180.02562 * 10 9 8 12 12 C 1.46904 * 110.99459 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46807 * 179.97438 * 12 11 10 14 14 O 1.21290 * 120.00074 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99911 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00169 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00239 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47040 * 119.99982 * 20 18 16 23 23 H 1.48497 * 109.47112 * 239.99867 * 20 18 16 24 24 C 1.36643 * 109.08762 * 0.24358 * 5 4 3 25 25 C 1.33815 * 124.52172 * 90.00297 * 3 2 1 26 26 C 1.50696 * 122.44892 * 0.04309 * 25 3 2 27 27 H 1.09003 * 109.46885 * 299.99864 * 1 2 3 28 28 H 1.08998 * 109.46911 * 59.99917 * 1 2 3 29 29 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46885 * 240.00135 * 2 1 3 31 31 H 1.08998 * 109.46911 * 120.00083 * 2 1 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.00894 * 111.00658 * 56.04933 * 11 10 9 38 38 H 1.08992 * 109.47591 * 299.99636 * 12 11 10 39 39 H 1.09001 * 109.47600 * 60.00212 * 12 11 10 40 40 H 0.97001 * 120.00445 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00459 * 179.97438 * 19 18 16 42 42 H 1.07995 * 123.35716 * 179.75353 * 24 5 4 43 43 H 1.08998 * 109.47556 * 90.00272 * 26 25 3 44 44 H 1.09000 * 109.47167 * 209.99944 * 26 25 3 45 45 H 1.08994 * 109.47391 * 329.99726 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7237 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3653 5.1949 -2.3215 9 6 3.8136 6.4813 -2.8604 10 6 3.7891 6.4302 -4.3894 11 7 4.2392 7.7200 -4.9296 12 6 4.2293 7.7076 -6.3986 13 6 4.6953 9.0444 -6.9153 14 8 5.0056 9.9210 -6.1365 15 7 4.7682 9.2655 -8.2428 16 6 5.1916 10.4818 -8.7129 17 1 5.4671 11.2626 -8.0195 18 6 5.2662 10.7100 -10.0816 19 7 4.9305 9.7601 -10.9253 20 14 5.8438 12.3669 -10.7221 21 1 6.1594 13.2578 -9.5766 22 1 7.0597 12.1796 -11.5538 23 1 4.7710 12.9808 -11.5450 24 6 2.7418 3.4128 0.8775 25 6 2.2852 2.1357 1.1025 26 6 2.0897 1.5796 2.4894 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1115 4.4786 -2.9243 33 1 3.1491 7.2724 -2.5127 34 1 4.8290 6.6840 -2.5199 35 1 4.4536 5.6393 -4.7370 36 1 2.7737 6.2277 -4.7300 37 1 5.1532 7.9608 -4.5766 38 1 4.8967 6.9253 -6.7599 39 1 3.2170 7.5141 -6.7535 40 1 4.5204 8.5645 -8.8657 41 1 4.9822 9.9195 -11.8807 42 1 2.9909 4.1026 1.6702 43 1 3.0116 1.1036 2.8233 44 1 1.8307 2.3888 3.1722 45 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150317930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:03 Heat of formation + Delta-G solvation = -55.749637 kcal Electronic energy + Delta-G solvation = -25007.027617 eV Core-core repulsion = 21150.453217 eV Total energy + Delta-G solvation = -3856.574400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05780 -38.86963 -38.31250 -36.31950 -34.40878 -34.26252 -33.75398 -31.26126 -30.96913 -29.47558 -27.88468 -26.30781 -24.87741 -23.72732 -22.82596 -22.11444 -20.95173 -19.34044 -19.07841 -18.28748 -17.90874 -16.82841 -16.29401 -16.08185 -15.86101 -15.32325 -15.14160 -14.81004 -14.62602 -14.54101 -14.18484 -13.96038 -13.83450 -13.59750 -13.41140 -13.18251 -13.08960 -12.65358 -12.59255 -12.48268 -12.10083 -11.94609 -11.81426 -11.64139 -11.53349 -11.48157 -11.44133 -11.20041 -11.05413 -10.34665 -10.33636 -10.22855 -9.52873 -9.38928 -9.03397 -8.78619 -8.51426 -8.14262 -7.97262 -6.42641 -3.83395 0.11690 1.04369 1.46363 1.95130 2.77978 2.94058 3.16351 3.27145 3.34754 3.89208 4.10768 4.15202 4.34001 4.44225 4.48398 4.69988 4.73584 4.84119 4.88782 4.94847 4.97163 5.16610 5.18790 5.22538 5.25217 5.30714 5.36496 5.38947 5.46287 5.52702 5.66030 5.71297 5.79797 5.87252 5.90982 5.93552 6.04273 6.10405 6.24236 7.06391 7.17314 7.54958 7.55638 7.88951 8.05567 8.60080 9.17204 9.53018 10.04317 10.75145 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.001481 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.460514 B =18907.789461 C =19680.145723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.193 4.193 4 S 0.196 5.804 5 C -0.265 4.265 6 C 0.591 3.409 7 O -0.526 6.526 8 N -0.724 5.724 9 C 0.121 3.879 10 C 0.049 3.951 11 N -0.665 5.665 12 C 0.052 3.948 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.047 4.047 25 C -0.121 4.121 26 C -0.094 4.094 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.397 0.603 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.353 0.647 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.153 0.847 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.319 -25.381 20.731 33.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.095 4.095 3 C -0.313 4.313 4 S 0.466 5.534 5 C -0.386 4.386 6 C 0.376 3.624 7 O -0.403 6.403 8 N -0.376 5.376 9 C -0.003 4.003 10 C -0.082 4.082 11 N -0.298 5.298 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.080 4.080 25 C -0.134 4.134 26 C -0.153 4.153 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.231 0.769 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.052 0.948 36 H 0.096 0.904 37 H 0.172 0.828 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.171 0.829 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.578 -24.088 20.020 32.475 hybrid contribution 0.845 -0.310 0.119 0.908 sum -7.733 -24.398 20.138 32.567 Atomic orbital electron populations 1.21800 0.93961 1.02244 1.02691 1.20152 0.96441 0.89312 1.03564 1.24057 1.07927 1.02098 0.97204 1.82927 1.60414 1.02413 1.07670 1.24497 1.16615 0.99322 0.98135 1.16898 0.77672 0.85650 0.82143 1.90860 1.48856 1.42684 1.57936 1.45770 1.68640 1.16915 1.06305 1.21340 1.01255 0.84505 0.93152 1.22085 1.01369 0.91518 0.93182 1.59935 1.34926 1.27986 1.06946 1.21675 1.01718 0.96844 0.87813 1.19772 0.85090 0.89290 0.83318 1.90536 1.54077 1.46039 1.55910 1.41858 1.58316 1.15004 1.04824 1.19771 1.40593 0.91316 0.91207 0.87813 1.25265 0.97545 0.99363 0.95763 1.69616 1.48498 1.33114 1.03102 0.85793 0.78150 0.81520 0.78847 1.19179 1.20773 1.20737 1.20638 0.96356 0.95738 0.95272 1.18673 1.04161 0.93936 0.96602 1.20523 1.02161 1.01120 0.91498 0.92136 0.92291 0.91786 0.90574 0.89691 0.76935 0.89799 0.90968 0.94834 0.90374 0.82751 0.93673 0.89435 0.77459 0.91922 0.82934 0.91146 0.91228 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.90 37.16 0.37 -0.24 16 2 C -0.06 -0.25 5.72 -27.88 -0.16 -0.41 16 3 C -0.19 -1.31 5.53 -35.86 -0.20 -1.51 16 4 S 0.20 1.40 22.10 -107.50 -2.38 -0.97 16 5 C -0.27 -2.67 6.45 -36.79 -0.24 -2.91 16 6 C 0.59 7.34 7.78 -12.89 -0.10 7.24 16 7 O -0.53 -8.49 16.84 5.19 0.09 -8.40 16 8 N -0.72 -7.54 5.55 -61.64 -0.34 -7.88 16 9 C 0.12 1.43 5.93 -4.04 -0.02 1.40 16 10 C 0.05 0.56 5.80 -3.82 -0.02 0.54 16 11 N -0.66 -10.53 6.13 -115.05 -0.70 -11.23 16 12 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 13 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 14 O -0.58 -15.89 15.78 5.55 0.09 -15.81 16 15 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 16 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 17 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 20 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 C -0.05 -0.44 9.80 -40.43 -0.40 -0.83 16 25 C -0.12 -0.90 5.78 -106.45 -0.62 -1.52 16 26 C -0.09 -0.48 9.55 36.00 0.34 -0.13 16 27 H 0.06 0.26 7.81 -51.93 -0.41 -0.14 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.31 7.25 -51.93 -0.38 -0.07 16 32 H 0.40 3.13 7.59 -40.82 -0.31 2.82 16 33 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.35 5.78 8.43 -39.29 -0.33 5.45 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 41 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.33 8.13 -51.93 -0.42 -0.10 16 45 H 0.07 0.27 6.86 -51.93 -0.36 -0.09 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -33.94 395.93 -9.72 -43.67 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -6.68 Total: 11.88 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -1.40 Total: 4.76 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.38 Total: -57.14 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.17 Total: -24.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.38 Total: -0.97 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.94 -9.72 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150317930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.084 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds