Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50696 * 109.47089 * 2 1 4 4 S 1.70624 * 124.52474 * 270.02453 * 3 2 1 5 5 C 1.75828 * 91.56226 * 179.97438 * 4 3 2 6 6 C 1.46586 * 125.45530 * 179.97438 * 5 4 3 7 7 O 1.21703 * 120.00024 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99782 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72446 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 N 1.46898 * 109.46947 * 180.02562 * 10 9 8 12 12 C 1.46904 * 110.99459 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46807 * 179.97438 * 12 11 10 14 14 O 1.21290 * 120.00074 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99911 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00169 * 179.97438 * 15 13 12 17 17 H 1.07999 * 120.00091 * 0.02562 * 16 15 13 18 18 C 1.38953 * 120.00239 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00067 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47040 * 119.99982 * 20 18 16 23 23 H 1.48497 * 109.47112 * 239.99867 * 20 18 16 24 24 C 1.36643 * 109.08762 * 0.24358 * 5 4 3 25 25 C 1.33815 * 124.52172 * 90.00297 * 3 2 1 26 26 C 1.50696 * 122.44892 * 0.04309 * 25 3 2 27 27 H 1.09003 * 109.46885 * 299.99864 * 1 2 3 28 28 H 1.08998 * 109.46911 * 59.99917 * 1 2 3 29 29 H 1.09000 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46885 * 240.00135 * 2 1 3 31 31 H 1.08998 * 109.46911 * 120.00083 * 2 1 3 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 34 34 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 35 35 H 1.08995 * 109.46638 * 300.00121 * 10 9 8 36 36 H 1.09006 * 109.47139 * 60.00254 * 10 9 8 37 37 H 1.00894 * 111.00658 * 56.04933 * 11 10 9 38 38 H 1.08992 * 109.47591 * 299.99636 * 12 11 10 39 39 H 1.09001 * 109.47600 * 60.00212 * 12 11 10 40 40 H 0.97001 * 120.00445 * 0.02562 * 15 13 12 41 41 H 0.96999 * 120.00459 * 179.97438 * 19 18 16 42 42 H 1.07995 * 123.35716 * 179.75353 * 24 5 4 43 43 H 1.08998 * 109.47556 * 90.00272 * 26 25 3 44 44 H 1.09000 * 109.47167 * 209.99944 * 26 25 3 45 45 H 1.08994 * 109.47391 * 329.99726 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3541 2.3327 -1.4057 5 6 2.8455 3.7237 -0.4491 6 6 3.2998 5.0089 -0.9883 7 8 3.6179 5.9078 -0.2320 8 7 3.3653 5.1949 -2.3215 9 6 3.8136 6.4813 -2.8604 10 6 3.7891 6.4302 -4.3894 11 7 4.2392 7.7200 -4.9296 12 6 4.2293 7.7076 -6.3986 13 6 4.6953 9.0444 -6.9153 14 8 5.0056 9.9210 -6.1365 15 7 4.7682 9.2655 -8.2428 16 6 5.1916 10.4818 -8.7129 17 1 5.4671 11.2626 -8.0195 18 6 5.2662 10.7100 -10.0816 19 7 4.9305 9.7601 -10.9253 20 14 5.8438 12.3669 -10.7221 21 1 6.1594 13.2578 -9.5766 22 1 7.0597 12.1796 -11.5538 23 1 4.7710 12.9808 -11.5450 24 6 2.7418 3.4128 0.8775 25 6 2.2852 2.1357 1.1025 26 6 2.0897 1.5796 2.4894 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1115 4.4786 -2.9243 33 1 3.1491 7.2724 -2.5127 34 1 4.8290 6.6840 -2.5199 35 1 4.4536 5.6393 -4.7370 36 1 2.7737 6.2277 -4.7300 37 1 5.1532 7.9608 -4.5766 38 1 4.8967 6.9253 -6.7599 39 1 3.2170 7.5141 -6.7535 40 1 4.5204 8.5645 -8.8657 41 1 4.9822 9.9195 -11.8807 42 1 2.9909 4.1026 1.6702 43 1 3.0116 1.1036 2.8233 44 1 1.8307 2.3888 3.1722 45 1 1.2853 0.8442 2.4759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150317930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -80.895250 kcal Electronic energy + Delta-G solvation = -25008.118013 eV Core-core repulsion = 21150.453217 eV Total energy + Delta-G solvation = -3857.664796 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.96581 -40.16422 -39.48345 -37.51516 -36.01859 -35.30575 -34.72787 -33.27418 -31.64460 -30.49418 -28.47120 -27.72024 -26.09818 -24.96856 -23.37611 -23.05459 -21.80335 -21.11109 -19.94577 -19.75628 -19.00160 -17.86626 -17.48287 -17.25493 -16.93602 -16.61389 -16.34929 -16.02220 -15.63176 -15.46763 -15.27362 -15.13000 -14.90924 -14.66448 -14.42261 -14.08045 -13.98988 -13.53879 -13.46012 -13.34601 -13.13263 -13.03207 -12.95439 -12.68522 -12.61532 -12.45300 -12.40367 -12.22745 -12.11653 -12.07547 -11.66836 -11.51856 -11.34466 -10.37551 -10.35751 -10.01713 -9.66841 -9.40582 -9.34551 -8.47272 -5.95824 -0.56444 0.42593 0.86001 1.28321 1.36630 1.42288 1.56289 1.86071 2.04843 2.06994 2.30143 2.99422 3.20193 3.52467 3.66288 3.72393 3.88387 4.06952 4.08550 4.18235 4.31058 4.39880 4.42645 4.44779 4.49128 4.50278 4.60012 4.79420 4.82726 4.84750 4.86736 4.92439 5.01100 5.05781 5.12583 5.17573 5.30368 5.41224 5.41356 5.53003 5.82462 6.05899 6.30210 6.30679 6.59870 6.98865 7.12611 7.55884 8.11590 8.70235 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.001481 C = 0.001422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.460514 B =18907.789461 C =19680.145723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.057 4.057 3 C -0.187 4.187 4 S 0.237 5.763 5 C -0.301 4.301 6 C 0.588 3.412 7 O -0.575 6.575 8 N -0.711 5.711 9 C 0.128 3.872 10 C 0.058 3.942 11 N -0.685 5.685 12 C 0.068 3.932 13 C 0.435 3.565 14 O -0.625 6.625 15 N -0.572 5.572 16 C -0.335 4.335 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.919 5.919 20 Si 0.992 3.008 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.271 1.271 24 C -0.052 4.052 25 C -0.134 4.134 26 C -0.093 4.093 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.347 0.653 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.398 0.602 41 H 0.278 0.722 42 H 0.143 0.857 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.138 -28.093 20.073 35.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.307 4.307 4 S 0.507 5.493 5 C -0.421 4.421 6 C 0.375 3.625 7 O -0.457 6.457 8 N -0.363 5.363 9 C 0.004 3.996 10 C -0.071 4.071 11 N -0.318 5.318 12 C -0.064 4.064 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.209 5.209 16 C -0.465 4.465 17 H 0.095 0.905 18 C -0.211 4.211 19 N -0.560 5.560 20 Si 0.816 3.184 21 H -0.200 1.200 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.086 4.086 25 C -0.146 4.146 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.248 0.752 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.423 -26.863 19.319 34.404 hybrid contribution 1.058 0.432 0.372 1.202 sum -8.365 -26.431 19.691 34.005 Atomic orbital electron populations 1.21803 0.93455 1.03113 1.02259 1.20300 0.96742 0.87740 1.04810 1.24498 1.06281 1.03075 0.96851 1.82684 1.59292 1.00399 1.06932 1.24365 1.18900 0.99695 0.99135 1.17276 0.76863 0.86054 0.82263 1.90823 1.51235 1.44529 1.59071 1.45592 1.67887 1.16777 1.06041 1.21141 1.00214 0.84655 0.93628 1.22070 1.02645 0.90134 0.92271 1.59896 1.34801 1.30879 1.06205 1.21534 1.03182 0.93160 0.88563 1.20926 0.83235 0.91186 0.82385 1.90506 1.55559 1.48304 1.56819 1.41913 1.58805 1.14457 1.05735 1.19706 1.42904 0.92250 0.91649 0.90455 1.26013 0.97012 1.02700 0.95375 1.69665 1.48311 1.34425 1.03567 0.84881 0.78228 0.77308 0.77976 1.19959 1.19513 1.19590 1.20787 0.96225 0.96595 0.95008 1.18843 1.04417 0.93236 0.98089 1.20574 1.03074 1.01439 0.90084 0.92452 0.92883 0.90306 0.89494 0.88320 0.75208 0.91837 0.91985 0.92342 0.88722 0.83465 0.90817 0.87229 0.76830 0.91265 0.83903 0.90381 0.91229 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.90 71.98 0.71 -0.10 16 2 C -0.06 -0.35 5.72 29.85 0.17 -0.18 16 3 C -0.19 -2.16 5.53 24.68 0.14 -2.03 16 4 S 0.24 2.97 22.10 -56.49 -1.25 1.72 16 5 C -0.30 -6.05 6.45 24.08 0.16 -5.89 16 6 C 0.59 15.00 7.78 86.42 0.67 15.67 16 7 O -0.58 -19.68 16.84 -4.36 -0.07 -19.75 16 8 N -0.71 -14.42 5.55 -467.15 -2.59 -17.02 16 9 C 0.13 2.99 5.93 86.38 0.51 3.51 16 10 C 0.06 1.22 5.80 86.30 0.50 1.72 16 11 N -0.68 -20.97 6.13 -517.92 -3.17 -24.15 16 12 C 0.07 2.21 6.17 85.56 0.53 2.74 16 13 C 0.44 20.60 7.82 87.66 0.69 21.28 16 14 O -0.63 -35.08 15.78 -3.06 -0.05 -35.13 16 15 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 16 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 17 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 18 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 19 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 20 Si 0.99 43.03 29.55 68.60 2.03 45.06 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 C -0.05 -0.98 9.80 21.72 0.21 -0.77 16 25 C -0.13 -1.84 5.78 -21.05 -0.12 -1.97 16 26 C -0.09 -0.80 9.55 71.23 0.68 -0.12 16 27 H 0.06 0.36 7.81 -2.39 -0.02 0.34 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.39 7.25 -2.39 -0.02 0.37 16 32 H 0.41 5.78 7.59 -92.71 -0.70 5.07 16 33 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.35 11.33 8.43 -89.70 -0.76 10.58 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 40 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 41 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 45 H 0.08 0.46 6.86 -2.39 -0.02 0.44 16 Total: -1.00 -75.59 395.93 -1.48 -77.07 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -1.15 Total: 36.45 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 6.13 Total: 15.42 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -7.11 Total: -120.85 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -0.12 Total: -54.88 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -1.25 Total: 1.72 kcal Total: -75.59 -1.48 -77.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150317930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.827 kcal (2) G-P(sol) polarization free energy of solvation -75.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds