Wall clock time and date at job start Sat Apr 11 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46880 * 176.55428 * 3 2 1 5 5 C 1.36907 * 119.99613 * 86.56588 * 4 3 2 6 6 H 1.08001 * 119.99905 * 158.79810 * 5 4 3 7 7 C 1.39017 * 120.00095 * 338.79611 * 5 4 3 8 8 N 1.31384 * 120.00015 * 359.41493 * 7 5 4 9 9 Si 1.86802 * 119.99840 * 179.40965 * 7 5 4 10 10 H 1.48498 * 109.47274 * 90.00463 * 9 7 5 11 11 H 1.48503 * 109.47359 * 210.00198 * 9 7 5 12 12 H 1.48500 * 109.47166 * 330.00255 * 9 7 5 13 13 C 1.34773 * 120.00036 * 266.56665 * 4 3 2 14 14 O 1.21640 * 119.99691 * 175.23440 * 13 4 3 15 15 C 1.47371 * 120.00037 * 355.23518 * 13 4 3 16 16 N 1.32037 * 126.45422 * 3.91570 * 15 13 4 17 17 N 1.28459 * 110.20925 * 180.02562 * 16 15 13 18 18 C 1.40076 * 124.92696 * 179.97438 * 17 16 15 19 19 C 1.38889 * 120.06666 * 173.63337 * 18 17 16 20 20 C 1.38100 * 119.92644 * 179.67549 * 19 18 17 21 21 C 1.38308 * 120.06515 * 0.62076 * 20 19 18 22 22 C 1.38267 * 120.14344 * 359.67730 * 21 20 19 23 23 C 1.38128 * 120.06834 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.03288 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47183 * 2.53020 * 24 23 22 26 26 C 1.36132 * 110.14154 * 359.97438 * 17 16 15 27 27 C 1.35733 * 107.07352 * 0.26257 * 26 17 16 28 28 O 1.36077 * 127.26226 * 179.74068 * 27 26 17 29 29 H 4.40642 * 5.51464 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46876 * 56.56368 * 3 2 1 31 31 H 1.08993 * 109.47316 * 296.55918 * 3 2 1 32 32 H 0.97004 * 119.99662 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.03742 * 359.97438 * 19 18 17 34 34 H 1.07994 * 119.96457 * 180.31865 * 20 19 18 35 35 H 1.08002 * 119.92310 * 179.69912 * 21 20 19 36 36 H 1.07998 * 119.96344 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.47182 * 122.53372 * 24 23 22 38 38 H 1.09003 * 109.47234 * 242.53044 * 24 23 22 39 39 H 1.09000 * 109.47349 * 300.00249 * 25 24 23 40 40 H 1.08999 * 109.47373 * 60.00236 * 25 24 23 41 41 H 1.09004 * 109.47427 * 180.02562 * 25 24 23 42 42 H 1.07999 * 126.46305 * 180.02562 * 26 17 16 43 43 H 0.96696 * 114.00199 * 90.02425 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3796 -0.0830 5 6 3.2945 2.1186 1.0582 6 1 3.9524 2.9752 1.0587 7 6 2.6110 1.7665 2.2164 8 7 1.8019 0.7315 2.2127 9 14 2.8432 2.7651 3.7780 10 1 1.8425 3.8615 3.8179 11 1 2.6605 1.8850 4.9601 12 1 4.2112 3.3426 3.7975 13 6 3.4240 1.9207 -1.2828 14 8 3.7455 3.0913 -1.3602 15 6 3.3517 1.0941 -2.5007 16 7 2.9502 -0.1616 -2.5740 17 7 3.0131 -0.5774 -3.7878 18 6 2.6600 -1.8642 -4.2140 19 6 2.6412 -2.1676 -5.5692 20 6 2.2991 -3.4391 -5.9859 21 6 1.9631 -4.4061 -5.0558 22 6 1.9750 -4.1053 -3.7063 23 6 2.3232 -2.8375 -3.2828 24 6 2.3364 -2.5108 -1.8117 25 6 1.9896 -3.7652 -1.0075 26 6 3.4727 0.4139 -4.5998 27 6 3.7058 1.4962 -3.8145 28 8 4.1773 2.7114 -4.2053 29 1 -1.0502 -0.0004 0.0002 30 1 3.0096 -0.5655 -0.8576 31 1 3.0096 -0.4586 0.9191 32 1 1.3252 0.4856 3.0210 33 1 2.8984 -1.4115 -6.2962 34 1 2.2892 -3.6772 -7.0392 35 1 1.6913 -5.3983 -5.3845 36 1 1.7125 -4.8627 -2.9826 37 1 3.3278 -2.1589 -1.5266 38 1 1.6015 -1.7325 -1.6058 39 1 0.9981 -4.1171 -1.2927 40 1 2.7244 -4.5435 -1.2134 41 1 1.9987 -3.5288 0.0565 42 1 3.6268 0.3499 -5.6668 43 1 3.4860 3.3400 -4.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155223028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:17 Heat of formation + Delta-G solvation = 135.865291 kcal Electronic energy + Delta-G solvation = -30033.634507 eV Core-core repulsion = 26049.925202 eV Total energy + Delta-G solvation = -3983.709305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.65268 -39.50468 -38.27096 -36.87693 -35.14104 -34.34330 -33.26943 -31.84447 -31.19265 -29.90182 -29.60729 -28.64645 -26.36968 -25.34634 -24.26712 -23.49211 -21.98649 -20.96938 -20.50050 -19.39361 -18.22078 -17.71345 -17.15313 -16.70433 -16.16961 -16.05350 -15.75174 -15.00198 -14.79060 -14.48825 -14.31759 -14.07244 -13.92958 -13.81746 -13.79094 -13.60539 -12.83386 -12.69719 -12.60782 -12.17725 -12.09933 -11.80996 -11.58356 -11.16303 -11.08530 -11.03187 -10.83019 -10.80810 -10.41708 -10.27571 -9.86939 -9.83839 -9.35576 -9.11495 -8.98059 -8.76482 -8.62439 -8.40218 -7.98064 -7.79070 -6.27041 -3.90211 0.74881 1.15676 2.25457 2.33112 2.53055 3.19430 3.24816 3.29042 3.60413 3.90151 4.13634 4.28917 4.35253 4.47167 4.54948 4.62971 4.82316 4.93512 5.00899 5.06502 5.11025 5.15252 5.43034 5.43895 5.45670 5.51612 5.61812 5.72285 5.82010 5.89874 5.99855 6.09085 6.18169 6.21968 6.32223 6.36360 6.46724 6.56016 6.63262 6.85730 6.99536 7.21822 7.28531 7.50422 8.00186 8.03165 8.21623 8.45789 9.10482 9.11222 9.32041 9.90574 10.63765 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004492 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.819637 B = 6231.530972 C = 7966.177973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.064 4.064 3 C 0.203 3.797 4 N -0.418 5.418 5 C -0.302 4.302 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.860 5.860 9 Si 0.933 3.067 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.513 3.487 14 O -0.571 6.571 15 C 0.014 3.986 16 N -0.255 5.255 17 N -0.240 5.240 18 C 0.142 3.858 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.123 4.123 22 C -0.105 4.105 23 C -0.065 4.065 24 C -0.091 4.091 25 C -0.154 4.154 26 C -0.050 4.050 27 C 0.047 3.953 28 O -0.453 6.453 29 H 0.191 0.809 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.270 0.730 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.182 0.818 43 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.390 -12.343 -13.516 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.067 4.067 3 C 0.080 3.920 4 N -0.135 5.135 5 C -0.431 4.431 6 H 0.123 0.877 7 C -0.173 4.173 8 N -0.498 5.498 9 Si 0.759 3.241 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.301 3.699 14 O -0.453 6.453 15 C -0.148 4.148 16 N -0.087 5.087 17 N -0.021 5.021 18 C 0.050 3.950 19 C -0.149 4.149 20 C -0.126 4.126 21 C -0.142 4.142 22 C -0.124 4.124 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.211 4.211 26 C -0.190 4.190 27 C -0.009 4.009 28 O -0.258 6.258 29 H 0.208 0.792 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.199 0.801 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.138 -12.972 -12.643 18.150 hybrid contribution -0.555 1.319 0.187 1.443 sum -1.693 -11.653 -12.456 17.141 Atomic orbital electron populations 1.24036 0.95193 1.02958 1.09706 1.22730 0.93821 0.97391 0.92748 1.19319 0.84931 0.84377 1.03357 1.43602 1.53924 1.11303 1.04678 1.19789 1.25181 1.11740 0.86368 0.87729 1.25463 0.94882 0.96963 1.00013 1.69916 1.26196 1.25115 1.28570 0.85814 0.79066 0.79198 0.79973 1.20275 1.20822 1.19277 1.16624 0.86420 0.86065 0.80836 1.90653 1.54428 1.15412 1.84810 1.23280 1.03255 0.91374 0.96879 1.74149 1.21578 1.12710 1.00305 1.42472 1.45611 1.08900 1.05154 1.17540 1.02632 0.81465 0.93313 1.20809 1.03130 0.98282 0.92728 1.20905 0.99644 0.92198 0.99896 1.21234 1.00247 0.99601 0.93088 1.21145 0.99449 0.95692 0.96076 1.19905 0.98160 0.92277 0.96360 1.20997 1.04252 0.99072 0.88436 1.21892 1.00834 0.97408 1.00962 1.22741 1.08233 0.89820 0.98253 1.18111 1.04622 0.88026 0.90124 1.84858 1.34318 1.19994 1.86644 0.79152 0.87245 0.87972 0.91820 0.85125 0.85227 0.85577 0.84486 0.89542 0.87710 0.92689 0.92921 0.91625 0.80135 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.70 19.12 29.55 0.57 -6.13 16 2 C -0.06 -1.52 9.00 -37.12 -0.33 -1.86 16 3 C 0.20 4.79 4.57 -6.83 -0.03 4.76 16 4 N -0.42 -11.13 2.59 -119.17 -0.31 -11.44 16 5 C -0.30 -8.45 9.31 -15.00 -0.14 -8.59 16 6 H 0.11 3.02 7.40 -52.49 -0.39 2.63 16 7 C 0.03 0.81 5.32 -17.45 -0.09 0.72 16 8 N -0.86 -22.38 8.11 55.50 0.45 -21.93 16 9 Si 0.93 20.73 29.55 -169.99 -5.02 15.71 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.51 13.54 7.62 -12.55 -0.10 13.45 16 14 O -0.57 -16.48 16.24 3.19 0.05 -16.43 16 15 C 0.01 0.31 6.87 -82.67 -0.57 -0.26 16 16 N -0.25 -4.97 5.30 33.46 0.18 -4.79 16 17 N -0.24 -3.94 3.52 -10.40 -0.04 -3.98 16 18 C 0.14 1.98 6.64 -83.62 -0.56 1.42 16 19 C -0.13 -1.37 9.43 -39.39 -0.37 -1.74 16 20 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 21 C -0.12 -1.08 10.04 -39.55 -0.40 -1.48 16 22 C -0.11 -1.11 8.98 -39.61 -0.36 -1.47 16 23 C -0.07 -0.88 5.87 -104.44 -0.61 -1.49 16 24 C -0.09 -1.37 3.71 -27.89 -0.10 -1.47 16 25 C -0.15 -1.88 8.57 37.15 0.32 -1.57 16 26 C -0.05 -0.77 10.80 -16.54 -0.18 -0.95 16 27 C 0.05 0.88 7.35 -39.09 -0.29 0.59 16 28 O -0.45 -8.07 13.21 -22.03 -0.29 -8.36 16 29 H 0.19 3.60 7.80 -54.08 -0.42 3.18 16 30 H 0.11 2.34 1.78 -62.41 -0.11 2.23 16 31 H 0.10 2.52 6.71 -51.93 -0.35 2.17 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.13 1.11 6.68 -52.49 -0.35 0.76 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.14 1.21 5.90 -52.49 -0.31 0.90 16 37 H 0.09 1.43 6.21 -51.93 -0.32 1.10 16 38 H 0.10 1.85 4.84 -51.93 -0.25 1.60 16 39 H 0.05 0.60 7.39 -51.93 -0.38 0.22 16 40 H 0.05 0.55 7.63 -51.93 -0.40 0.15 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.18 1.93 7.01 -52.49 -0.37 1.57 16 43 H 0.38 5.16 9.07 45.56 0.41 5.58 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -33.78 354.08 -6.92 -40.70 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.64 Total: 12.59 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.64 Total: -7.41 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.28 Total: -42.14 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.24 Total: -24.79 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.78 -6.92 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155223028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.569 kcal (2) G-P(sol) polarization free energy of solvation -33.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds