Wall clock time and date at job start Sat Apr 11 2020 05:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46880 * 176.55428 * 3 2 1 5 5 C 1.36907 * 119.99613 * 86.56588 * 4 3 2 6 6 H 1.08001 * 119.99905 * 158.79810 * 5 4 3 7 7 C 1.39017 * 120.00095 * 338.79611 * 5 4 3 8 8 N 1.31384 * 120.00015 * 359.41493 * 7 5 4 9 9 Si 1.86802 * 119.99840 * 179.40965 * 7 5 4 10 10 H 1.48498 * 109.47274 * 90.00463 * 9 7 5 11 11 H 1.48503 * 109.47359 * 210.00198 * 9 7 5 12 12 H 1.48500 * 109.47166 * 330.00255 * 9 7 5 13 13 C 1.34773 * 120.00036 * 266.56665 * 4 3 2 14 14 O 1.21640 * 119.99691 * 175.23440 * 13 4 3 15 15 C 1.47371 * 120.00037 * 355.23518 * 13 4 3 16 16 N 1.32037 * 126.45422 * 3.91570 * 15 13 4 17 17 N 1.28459 * 110.20925 * 180.02562 * 16 15 13 18 18 C 1.40076 * 124.92696 * 179.97438 * 17 16 15 19 19 C 1.38889 * 120.06666 * 173.63337 * 18 17 16 20 20 C 1.38100 * 119.92644 * 179.67549 * 19 18 17 21 21 C 1.38308 * 120.06515 * 0.62076 * 20 19 18 22 22 C 1.38267 * 120.14344 * 359.67730 * 21 20 19 23 23 C 1.38128 * 120.06834 * 359.97438 * 22 21 20 24 24 C 1.50700 * 120.03288 * 180.02562 * 23 22 21 25 25 C 1.52993 * 109.47183 * 2.53020 * 24 23 22 26 26 C 1.36132 * 110.14154 * 359.97438 * 17 16 15 27 27 C 1.35733 * 107.07352 * 0.26257 * 26 17 16 28 28 O 1.36077 * 127.26226 * 179.74068 * 27 26 17 29 29 H 4.40642 * 5.51464 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46876 * 56.56368 * 3 2 1 31 31 H 1.08993 * 109.47316 * 296.55918 * 3 2 1 32 32 H 0.97004 * 119.99662 * 179.97438 * 8 7 5 33 33 H 1.08000 * 120.03742 * 359.97438 * 19 18 17 34 34 H 1.07994 * 119.96457 * 180.31865 * 20 19 18 35 35 H 1.08002 * 119.92310 * 179.69912 * 21 20 19 36 36 H 1.07998 * 119.96344 * 180.02562 * 22 21 20 37 37 H 1.09000 * 109.47182 * 122.53372 * 24 23 22 38 38 H 1.09003 * 109.47234 * 242.53044 * 24 23 22 39 39 H 1.09000 * 109.47349 * 300.00249 * 25 24 23 40 40 H 1.08999 * 109.47373 * 60.00236 * 25 24 23 41 41 H 1.09004 * 109.47427 * 180.02562 * 25 24 23 42 42 H 1.07999 * 126.46305 * 180.02562 * 26 17 16 43 43 H 0.96696 * 114.00199 * 90.02425 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3796 -0.0830 5 6 3.2945 2.1186 1.0582 6 1 3.9524 2.9752 1.0587 7 6 2.6110 1.7665 2.2164 8 7 1.8019 0.7315 2.2127 9 14 2.8432 2.7651 3.7780 10 1 1.8425 3.8615 3.8179 11 1 2.6605 1.8850 4.9601 12 1 4.2112 3.3426 3.7975 13 6 3.4240 1.9207 -1.2828 14 8 3.7455 3.0913 -1.3602 15 6 3.3517 1.0941 -2.5007 16 7 2.9502 -0.1616 -2.5740 17 7 3.0131 -0.5774 -3.7878 18 6 2.6600 -1.8642 -4.2140 19 6 2.6412 -2.1676 -5.5692 20 6 2.2991 -3.4391 -5.9859 21 6 1.9631 -4.4061 -5.0558 22 6 1.9750 -4.1053 -3.7063 23 6 2.3232 -2.8375 -3.2828 24 6 2.3364 -2.5108 -1.8117 25 6 1.9896 -3.7652 -1.0075 26 6 3.4727 0.4139 -4.5998 27 6 3.7058 1.4962 -3.8145 28 8 4.1773 2.7114 -4.2053 29 1 -1.0502 -0.0004 0.0002 30 1 3.0096 -0.5655 -0.8576 31 1 3.0096 -0.4586 0.9191 32 1 1.3252 0.4856 3.0210 33 1 2.8984 -1.4115 -6.2962 34 1 2.2892 -3.6772 -7.0392 35 1 1.6913 -5.3983 -5.3845 36 1 1.7125 -4.8627 -2.9826 37 1 3.3278 -2.1589 -1.5266 38 1 1.6015 -1.7325 -1.6058 39 1 0.9981 -4.1171 -1.2927 40 1 2.7244 -4.5435 -1.2134 41 1 1.9987 -3.5288 0.0565 42 1 3.6268 0.3499 -5.6668 43 1 3.4860 3.3400 -4.4543 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155223028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:16 Heat of formation + Delta-G solvation = 114.130807 kcal Electronic energy + Delta-G solvation = -30034.576985 eV Core-core repulsion = 26049.925202 eV Total energy + Delta-G solvation = -3984.651783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.00664 -40.57388 -40.06911 -38.23838 -37.09438 -35.40430 -34.52140 -33.68321 -33.08026 -31.23573 -30.61926 -29.75544 -28.24849 -27.09236 -25.37040 -24.87244 -23.35358 -22.09240 -21.54117 -21.04141 -19.78194 -19.33363 -18.49919 -18.41640 -17.85488 -17.30613 -16.81955 -16.67690 -15.96245 -15.90707 -15.78940 -15.62930 -15.38910 -15.09004 -14.91902 -14.70234 -14.60152 -14.27779 -14.14791 -13.55706 -13.40548 -12.95896 -12.93149 -12.81845 -12.63526 -12.29975 -12.16746 -12.10600 -11.90104 -11.78602 -11.42250 -11.19562 -11.02777 -11.00465 -10.62506 -10.32401 -10.09839 -9.83550 -9.75972 -9.10453 -8.26824 -6.01850 -0.25539 0.36068 0.71592 1.15690 1.32427 1.38932 1.41484 1.51591 2.06899 2.27464 2.42962 2.59829 2.78107 2.88809 3.11777 3.34631 3.61108 3.69719 3.83611 3.90295 4.05731 4.07900 4.21094 4.35545 4.37760 4.44636 4.50276 4.58958 4.63279 4.65752 4.90528 5.03725 5.07206 5.13981 5.18945 5.20856 5.33214 5.37824 5.38211 5.50773 5.52969 5.57380 5.76965 5.98955 6.09907 6.39879 6.77407 6.81995 7.05490 7.26807 7.33362 7.89286 8.61362 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.004492 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.819637 B = 6231.530972 C = 7966.177973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.092 4.092 3 C 0.212 3.788 4 N -0.433 5.433 5 C -0.348 4.348 6 H 0.080 0.920 7 C 0.001 3.999 8 N -0.868 5.868 9 Si 0.997 3.003 10 H -0.277 1.277 11 H -0.265 1.265 12 H -0.269 1.269 13 C 0.504 3.496 14 O -0.613 6.613 15 C -0.037 4.037 16 N -0.257 5.257 17 N -0.227 5.227 18 C 0.096 3.904 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.107 4.107 22 C -0.110 4.110 23 C -0.085 4.085 24 C -0.089 4.089 25 C -0.147 4.147 26 C -0.020 4.020 27 C 0.025 3.975 28 O -0.465 6.465 29 H 0.223 0.777 30 H 0.132 0.868 31 H 0.081 0.919 32 H 0.274 0.726 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.235 0.765 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -15.551 -16.544 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.094 4.094 3 C 0.090 3.910 4 N -0.150 5.150 5 C -0.476 4.476 6 H 0.098 0.902 7 C -0.202 4.202 8 N -0.505 5.505 9 Si 0.820 3.180 10 H -0.203 1.203 11 H -0.189 1.189 12 H -0.194 1.194 13 C 0.292 3.708 14 O -0.499 6.499 15 C -0.196 4.196 16 N -0.092 5.092 17 N -0.009 5.009 18 C 0.006 3.994 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.086 4.086 24 C -0.126 4.126 25 C -0.204 4.204 26 C -0.161 4.161 27 C -0.031 4.031 28 O -0.272 6.272 29 H 0.240 0.760 30 H 0.148 0.852 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.180 0.820 36 H 0.171 0.829 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.251 0.749 43 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -2.373 -16.225 -15.662 22.676 hybrid contribution -0.254 2.062 0.892 2.261 sum -2.626 -14.163 -14.770 20.631 Atomic orbital electron populations 1.24822 0.96121 1.01770 1.08545 1.22921 0.94268 0.98465 0.93782 1.19279 0.85376 0.83115 1.03189 1.43802 1.54318 1.12230 1.04638 1.19760 1.27099 1.12576 0.88186 0.90250 1.26208 0.94081 0.97768 1.02174 1.70052 1.25791 1.25304 1.29308 0.84888 0.78709 0.77839 0.76585 1.20324 1.18904 1.19352 1.17260 0.85161 0.86253 0.82078 1.90573 1.56056 1.17325 1.85955 1.22795 1.07537 0.92700 0.96571 1.73964 1.21178 1.11655 1.02401 1.42823 1.43657 1.10118 1.04270 1.18051 1.05867 0.80318 0.95114 1.21210 1.01653 0.99886 0.91316 1.21425 0.97492 0.90970 1.01901 1.21731 0.97531 1.01237 0.92036 1.21389 0.99093 0.94620 0.97735 1.19936 0.99758 0.93847 0.95096 1.20780 1.01690 0.99305 0.90794 1.21846 1.02334 0.96784 0.99448 1.23328 1.05350 0.87611 0.99838 1.18301 1.05998 0.89341 0.89413 1.84802 1.35508 1.20391 1.86491 0.76003 0.85204 0.90107 0.91486 0.82591 0.81318 0.81969 0.82943 0.92359 0.90866 0.91097 0.90832 0.93329 0.74852 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.34 19.12 74.32 1.42 -11.92 16 2 C -0.09 -4.56 9.00 31.13 0.28 -4.28 16 3 C 0.21 10.77 4.57 84.57 0.39 11.16 16 4 N -0.43 -24.93 2.59 -649.20 -1.68 -26.61 16 5 C -0.35 -20.94 9.31 84.09 0.78 -20.16 16 6 H 0.08 5.02 7.40 -2.91 -0.02 4.99 16 7 C 0.00 0.05 5.32 84.95 0.45 0.51 16 8 N -0.87 -46.79 8.11 21.68 0.18 -46.62 16 9 Si 1.00 43.98 29.55 68.60 2.03 46.00 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.50 28.73 7.62 86.65 0.66 29.39 16 14 O -0.61 -38.37 16.24 -2.20 -0.04 -38.40 16 15 C -0.04 -1.72 6.87 42.42 0.29 -1.43 16 16 N -0.26 -10.45 5.30 -48.07 -0.25 -10.70 16 17 N -0.23 -7.29 3.52 -186.83 -0.66 -7.94 16 18 C 0.10 2.47 6.64 38.13 0.25 2.72 16 19 C -0.12 -1.99 9.43 22.39 0.21 -1.78 16 20 C -0.10 -1.13 10.04 22.25 0.22 -0.91 16 21 C -0.11 -1.28 10.04 22.29 0.22 -1.06 16 22 C -0.11 -1.94 8.98 22.25 0.20 -1.74 16 23 C -0.08 -2.15 5.87 -19.74 -0.12 -2.27 16 24 C -0.09 -2.73 3.71 29.85 0.11 -2.62 16 25 C -0.15 -3.56 8.57 71.98 0.62 -2.94 16 26 C -0.02 -0.58 10.80 83.44 0.90 0.32 16 27 C 0.02 0.95 7.35 22.59 0.17 1.12 16 28 O -0.46 -16.97 13.21 -92.46 -1.22 -18.19 16 29 H 0.22 8.21 7.80 -4.41 -0.03 8.17 16 30 H 0.13 6.02 1.78 -15.94 -0.03 5.99 16 31 H 0.08 4.32 6.71 -2.39 -0.02 4.31 16 32 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.16 1.72 6.68 -2.91 -0.02 1.70 16 34 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 35 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 36 H 0.15 2.13 5.90 -2.91 -0.02 2.11 16 37 H 0.06 2.06 6.21 -2.39 -0.01 2.05 16 38 H 0.07 2.71 4.84 -2.39 -0.01 2.70 16 39 H 0.07 1.46 7.39 -2.39 -0.02 1.44 16 40 H 0.07 1.44 7.63 -2.39 -0.02 1.42 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.24 3.89 7.01 -2.91 -0.02 3.87 16 43 H 0.40 11.11 9.07 -74.06 -0.67 10.44 16 Total: -1.00 -81.75 354.08 5.81 -75.94 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.39 Total: 32.40 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 7.06 Total: -5.89 kcal Atomic # 7 Polarization: -89.45 SS G_CDS: -2.42 Total: -91.87 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -1.26 Total: -56.59 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -81.75 5.81 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155223028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.072 kcal (2) G-P(sol) polarization free energy of solvation -81.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds