Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30176 * 126.80949 * 90.01976 * 3 2 1 5 5 O 1.20916 * 111.61033 * 179.97438 * 4 3 2 6 6 C 1.34041 * 111.56514 * 0.02562 * 5 4 3 7 7 C 1.35452 * 106.44533 * 359.74864 * 6 5 4 8 8 C 1.50699 * 128.00453 * 180.23361 * 7 6 5 9 9 N 1.46899 * 109.47404 * 260.16343 * 8 7 6 10 10 C 1.46904 * 111.00210 * 179.97438 * 9 8 7 11 11 H 1.08998 * 110.88541 * 322.57539 * 10 9 8 12 12 C 1.55149 * 111.00208 * 198.65414 * 10 9 8 13 13 C 1.54329 * 102.93869 * 206.42511 * 12 10 9 14 14 N 1.47022 * 107.27354 * 22.19322 * 13 12 10 15 15 C 1.34768 * 125.64883 * 181.09139 * 14 13 12 16 16 O 1.21284 * 119.99704 * 179.97438 * 15 14 13 17 17 C 1.50703 * 120.00470 * 359.96172 * 15 14 13 18 18 S 1.80998 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99947 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99994 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00100 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99911 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47274 * 89.99899 * 23 21 19 25 25 H 1.48498 * 109.47003 * 210.00094 * 23 21 19 26 26 H 1.48506 * 109.47026 * 329.99855 * 23 21 19 27 27 C 1.47423 * 108.70108 * 1.05855 * 14 13 12 28 28 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 29 29 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 32 32 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 33 33 H 1.07999 * 126.77329 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.47671 * 20.17217 * 8 7 6 35 35 H 1.09008 * 109.47224 * 140.16557 * 8 7 6 36 36 H 1.00895 * 111.00195 * 303.95978 * 9 8 7 37 37 H 1.09000 * 110.72638 * 324.78317 * 12 10 9 38 38 H 1.09001 * 110.72478 * 88.06799 * 12 10 9 39 39 H 1.08996 * 109.88428 * 262.77238 * 13 12 10 40 40 H 1.09003 * 109.87987 * 141.61119 * 13 12 10 41 41 H 1.08993 * 109.46851 * 300.00354 * 17 15 14 42 42 H 1.09003 * 109.46660 * 59.99192 * 17 15 14 43 43 H 0.96997 * 119.99990 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36856 * 217.03105 * 27 14 13 45 45 H 1.09005 * 110.36717 * 94.70784 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1560 1.0422 5 8 2.6821 3.2560 0.7252 6 6 2.7310 3.3963 -0.6069 7 6 2.3194 2.2176 -1.1321 8 6 2.1937 1.8431 -2.5864 9 7 0.7895 1.9580 -3.0021 10 6 0.6286 1.6004 -4.4178 11 1 1.4757 1.9526 -5.0063 12 6 -0.7083 2.1500 -4.9817 13 6 -1.0267 1.1711 -6.1316 14 7 -0.2982 -0.0762 -5.8575 15 6 -0.2980 -1.1737 -6.6396 16 8 0.3429 -2.1504 -6.3135 17 6 -1.0941 -1.1875 -7.9191 18 16 -0.8913 -2.7885 -8.7386 19 6 -1.8975 -2.5330 -10.1624 20 1 -2.4061 -1.5906 -10.3021 21 6 -2.0364 -3.5430 -11.1043 22 7 -1.4161 -4.6914 -10.9343 23 14 -3.1026 -3.2718 -12.6141 24 1 -2.2752 -2.7046 -13.7090 25 1 -3.6807 -4.5680 -13.0510 26 1 -4.1995 -2.3273 -12.2823 27 6 0.4325 0.0729 -4.5858 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.0413 4.2746 -1.1536 34 1 2.8070 2.5135 -3.1886 35 1 2.5317 0.8164 -2.7278 36 1 0.1917 1.3946 -2.4162 37 1 -1.4891 2.1192 -4.2218 38 1 -0.5788 3.1630 -5.3625 39 1 -0.6952 1.5932 -7.0802 40 1 -2.0984 0.9748 -6.1651 41 1 -2.1479 -1.0256 -7.6929 42 1 -0.7378 -0.3950 -8.5772 43 1 -1.5135 -5.3973 -11.5923 44 1 1.3981 -0.4296 -4.6420 45 1 -0.1567 -0.3269 -3.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181096753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = 24.503542 kcal Electronic energy + Delta-G solvation = -26341.656564 eV Core-core repulsion = 22488.562203 eV Total energy + Delta-G solvation = -3853.094361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.29534 -39.99830 -37.97417 -36.51780 -34.87209 -32.77304 -32.45098 -31.46200 -30.79390 -29.67103 -28.01966 -25.81736 -25.41695 -24.85342 -23.24588 -21.93569 -21.30429 -21.01610 -19.39285 -17.98224 -17.87272 -17.67071 -16.69865 -16.65479 -16.04551 -15.57833 -14.93038 -14.86538 -14.81350 -14.58519 -14.24505 -14.07367 -13.88208 -13.55991 -13.30371 -13.19007 -12.96151 -12.78212 -12.60317 -12.54031 -11.97498 -11.95719 -11.86303 -11.68611 -11.62266 -11.27496 -11.08375 -11.04538 -11.03552 -10.78664 -10.31338 -9.90970 -9.83842 -9.49825 -9.08763 -8.93047 -8.55541 -8.26471 -6.53134 -6.23800 -3.94810 1.12904 1.78801 2.82348 2.89501 3.00404 3.20705 3.23622 3.28549 3.53511 3.69125 3.85213 4.08740 4.17614 4.24209 4.37134 4.47134 4.53456 4.71849 4.82317 4.84459 4.97271 4.98666 5.01615 5.05601 5.11084 5.11467 5.28616 5.32448 5.43551 5.47709 5.51855 5.56280 5.58939 5.60202 5.62635 5.70745 5.78931 5.80545 5.91805 6.10726 6.29359 6.51226 6.84504 7.57147 7.60098 7.91556 8.33063 8.49527 9.21454 10.83631 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.001886 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.392576 B =14840.563104 C =15301.316533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.027 3.973 4 N -0.365 5.365 5 O 0.096 5.904 6 C -0.041 4.041 7 C -0.198 4.198 8 C 0.132 3.868 9 N -0.670 5.670 10 C 0.074 3.926 11 H 0.099 0.901 12 C -0.118 4.118 13 C 0.100 3.900 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.062 6.062 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.080 3.920 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.217 0.783 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.345 0.655 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.076 0.924 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 18.842 19.880 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.133 4.133 4 N -0.070 5.070 5 O 0.032 5.968 6 C -0.123 4.123 7 C -0.202 4.202 8 C 0.003 3.997 9 N -0.302 5.302 10 C -0.037 4.037 11 H 0.117 0.883 12 C -0.156 4.156 13 C -0.024 4.024 14 N -0.362 5.362 15 C 0.337 3.663 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.046 4.046 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.165 0.835 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.550 17.609 21.449 28.514 hybrid contribution -1.353 0.379 -2.203 2.613 sum 5.197 17.988 19.246 26.852 Atomic orbital electron populations 1.21770 0.93629 1.02735 1.02337 1.19988 0.96653 0.88160 1.04039 1.23547 1.01972 0.99297 0.88475 1.73856 1.16194 0.92754 1.24178 1.84831 1.62182 1.26679 1.23097 1.25820 1.02406 1.00594 0.83474 1.21122 1.07727 0.94318 0.97037 1.20168 0.90413 1.00594 0.88494 1.60677 1.06545 1.60302 1.02698 1.22840 0.99204 0.92508 0.89185 0.88335 1.22618 0.96824 0.98937 0.97219 1.22059 0.97206 0.84252 0.98843 1.48386 1.50293 1.14639 1.22855 1.20074 0.81170 0.80846 0.84225 1.90710 1.42677 1.32901 1.72717 1.23501 1.01847 1.07929 0.96390 1.85402 1.65006 1.09578 1.23507 1.22852 1.34100 1.03463 1.07889 0.90906 1.24999 0.95939 0.94432 0.98237 1.70017 1.40745 1.04099 1.35401 0.86162 0.79955 0.77820 0.81528 1.20252 1.20738 1.19676 1.22895 0.97567 0.96984 0.87136 0.92208 0.92448 0.91209 0.89868 0.89612 0.76655 0.89210 0.93137 0.83466 0.90183 0.89495 0.91055 0.91082 0.89264 0.89250 0.92166 0.90539 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.61 16 2 C -0.05 -0.36 6.44 -27.88 -0.18 -0.54 16 3 C 0.03 0.23 6.58 -82.10 -0.54 -0.31 16 4 N -0.37 -3.73 12.07 33.42 0.40 -3.33 16 5 O 0.10 0.83 11.20 17.17 0.19 1.03 16 6 C -0.04 -0.25 12.26 29.74 0.36 0.12 16 7 C -0.20 -1.42 5.84 -104.42 -0.61 -2.03 16 8 C 0.13 0.83 6.04 -4.98 -0.03 0.80 16 9 N -0.67 -4.55 6.36 -105.72 -0.67 -5.22 16 10 C 0.07 0.56 3.32 -65.57 -0.22 0.35 16 11 H 0.10 0.74 7.92 -51.93 -0.41 0.33 16 12 C -0.12 -0.85 6.65 -24.90 -0.17 -1.02 16 13 C 0.10 1.00 6.49 -3.06 -0.02 0.98 16 14 N -0.62 -8.57 3.33 -170.52 -0.57 -9.13 16 15 C 0.55 10.40 7.87 -10.99 -0.09 10.32 16 16 O -0.52 -11.83 16.12 5.55 0.09 -11.74 16 17 C -0.15 -2.96 5.35 36.01 0.19 -2.77 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.14 9.50 30.94 0.29 -14.85 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.08 0.87 6.49 -2.53 -0.02 0.85 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.37 6.06 -51.93 -0.31 0.05 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.56 7.98 -51.93 -0.41 0.14 16 33 H 0.22 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.05 0.34 7.98 -51.92 -0.41 -0.08 16 36 H 0.34 2.40 6.21 -39.29 -0.24 2.16 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 45 H 0.06 0.66 7.80 -51.93 -0.41 0.25 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -35.46 389.48 -8.74 -44.21 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.81 Total: -1.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.74 Total: -6.73 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.10 Total: -42.99 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.28 Total: -10.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.46 -8.74 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181096753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.710 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds