Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.30176 * 126.80949 * 90.01976 * 3 2 1 5 5 O 1.20916 * 111.61033 * 179.97438 * 4 3 2 6 6 C 1.34041 * 111.56514 * 0.02562 * 5 4 3 7 7 C 1.35452 * 106.44533 * 359.74864 * 6 5 4 8 8 C 1.50699 * 128.00453 * 180.23361 * 7 6 5 9 9 N 1.46899 * 109.47404 * 260.16343 * 8 7 6 10 10 C 1.46904 * 111.00210 * 179.97438 * 9 8 7 11 11 H 1.08998 * 110.88541 * 322.57539 * 10 9 8 12 12 C 1.55149 * 111.00208 * 198.65414 * 10 9 8 13 13 C 1.54329 * 102.93869 * 206.42511 * 12 10 9 14 14 N 1.47022 * 107.27354 * 22.19322 * 13 12 10 15 15 C 1.34768 * 125.64883 * 181.09139 * 14 13 12 16 16 O 1.21284 * 119.99704 * 179.97438 * 15 14 13 17 17 C 1.50703 * 120.00470 * 359.96172 * 15 14 13 18 18 S 1.80998 * 109.47289 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99901 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99947 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99994 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00100 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99911 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47274 * 89.99899 * 23 21 19 25 25 H 1.48498 * 109.47003 * 210.00094 * 23 21 19 26 26 H 1.48506 * 109.47026 * 329.99855 * 23 21 19 27 27 C 1.47423 * 108.70108 * 1.05855 * 14 13 12 28 28 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 29 29 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 30 30 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 32 32 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 33 33 H 1.07999 * 126.77329 * 179.97438 * 6 5 4 34 34 H 1.09007 * 109.47671 * 20.17217 * 8 7 6 35 35 H 1.09008 * 109.47224 * 140.16557 * 8 7 6 36 36 H 1.00895 * 111.00195 * 303.95978 * 9 8 7 37 37 H 1.09000 * 110.72638 * 324.78317 * 12 10 9 38 38 H 1.09001 * 110.72478 * 88.06799 * 12 10 9 39 39 H 1.08996 * 109.88428 * 262.77238 * 13 12 10 40 40 H 1.09003 * 109.87987 * 141.61119 * 13 12 10 41 41 H 1.08993 * 109.46851 * 300.00354 * 17 15 14 42 42 H 1.09003 * 109.46660 * 59.99192 * 17 15 14 43 43 H 0.96997 * 119.99990 * 179.97438 * 22 21 19 44 44 H 1.09000 * 110.36856 * 217.03105 * 27 14 13 45 45 H 1.09005 * 110.36717 * 94.70784 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2927 2.1560 1.0422 5 8 2.6821 3.2560 0.7252 6 6 2.7310 3.3963 -0.6069 7 6 2.3194 2.2176 -1.1321 8 6 2.1937 1.8431 -2.5864 9 7 0.7895 1.9580 -3.0021 10 6 0.6286 1.6004 -4.4178 11 1 1.4757 1.9526 -5.0063 12 6 -0.7083 2.1500 -4.9817 13 6 -1.0267 1.1711 -6.1316 14 7 -0.2982 -0.0762 -5.8575 15 6 -0.2980 -1.1737 -6.6396 16 8 0.3429 -2.1504 -6.3135 17 6 -1.0941 -1.1875 -7.9191 18 16 -0.8913 -2.7885 -8.7386 19 6 -1.8975 -2.5330 -10.1624 20 1 -2.4061 -1.5906 -10.3021 21 6 -2.0364 -3.5430 -11.1043 22 7 -1.4161 -4.6914 -10.9343 23 14 -3.1026 -3.2718 -12.6141 24 1 -2.2752 -2.7046 -13.7090 25 1 -3.6807 -4.5680 -13.0510 26 1 -4.1995 -2.3273 -12.2823 27 6 0.4325 0.0729 -4.5858 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.0413 4.2746 -1.1536 34 1 2.8070 2.5135 -3.1886 35 1 2.5317 0.8164 -2.7278 36 1 0.1917 1.3946 -2.4162 37 1 -1.4891 2.1192 -4.2218 38 1 -0.5788 3.1630 -5.3625 39 1 -0.6952 1.5932 -7.0802 40 1 -2.0984 0.9748 -6.1651 41 1 -2.1479 -1.0256 -7.6929 42 1 -0.7378 -0.3950 -8.5772 43 1 -1.5135 -5.3973 -11.5923 44 1 1.3981 -0.4296 -4.6420 45 1 -0.1567 -0.3269 -3.7605 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181096753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = 0.043203 kcal Electronic energy + Delta-G solvation = -26342.717244 eV Core-core repulsion = 22488.562203 eV Total energy + Delta-G solvation = -3854.155041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.90088 -41.11212 -39.03604 -37.26448 -35.58876 -34.59319 -33.47361 -32.09688 -31.77530 -30.82136 -28.96723 -27.67846 -26.42272 -25.42617 -24.18253 -22.48395 -21.93606 -21.63816 -20.73666 -19.59159 -18.57027 -18.40345 -18.06433 -17.56969 -16.95628 -16.88459 -16.22958 -16.11277 -15.99839 -15.59248 -15.20878 -14.92672 -14.77944 -14.53094 -14.31232 -14.04705 -13.81744 -13.79897 -13.66190 -13.39186 -13.25777 -13.15838 -12.89297 -12.69755 -12.61987 -12.50513 -12.28991 -12.23483 -11.85222 -11.75120 -11.66188 -11.14768 -11.03119 -10.90308 -10.45251 -10.29438 -9.76980 -9.46273 -8.69131 -8.35305 -6.14167 0.61214 1.18856 1.24257 1.42610 1.44791 1.53519 1.55989 2.06024 2.26723 2.43024 2.98885 3.05484 3.20664 3.29545 3.52520 3.56873 3.67891 3.88376 3.92693 4.01643 4.07816 4.20807 4.27068 4.30657 4.32522 4.37090 4.44270 4.44406 4.59800 4.62715 4.78993 4.80877 4.82052 4.86546 4.94012 5.02107 5.09158 5.11657 5.21545 5.25454 5.32442 5.41149 5.91116 6.19160 6.26812 6.35481 7.05807 7.08547 7.35794 8.73938 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029117 B = 0.001886 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.392576 B =14840.563104 C =15301.316533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C 0.017 3.983 4 N -0.400 5.400 5 O 0.085 5.915 6 C -0.025 4.025 7 C -0.210 4.210 8 C 0.135 3.865 9 N -0.663 5.663 10 C 0.089 3.911 11 H 0.107 0.893 12 C -0.105 4.105 13 C 0.089 3.911 14 N -0.614 5.614 15 C 0.545 3.455 16 O -0.568 6.568 17 C -0.119 4.119 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.084 0.916 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.074 3.926 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.257 0.743 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.344 0.656 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.059 0.941 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.679 22.114 19.253 29.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.143 4.143 4 N -0.107 5.107 5 O 0.023 5.977 6 C -0.107 4.107 7 C -0.214 4.214 8 C 0.006 3.994 9 N -0.294 5.294 10 C -0.023 4.023 11 H 0.125 0.875 12 C -0.143 4.143 13 C -0.033 4.033 14 N -0.349 5.349 15 C 0.333 3.667 16 O -0.447 6.447 17 C -0.270 4.270 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.204 1.204 26 H -0.181 1.181 27 C -0.051 4.051 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.272 0.728 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.637 20.959 20.861 30.104 hybrid contribution -1.028 -0.530 -1.884 2.210 sum 4.608 20.430 18.978 28.262 Atomic orbital electron populations 1.21735 0.93207 1.03036 1.02082 1.20025 0.97002 0.87824 1.04086 1.23852 1.01701 0.99744 0.88956 1.73855 1.17900 0.93619 1.25336 1.84790 1.62240 1.26207 1.24491 1.26569 1.00314 1.01359 0.82465 1.21252 1.08566 0.94580 0.97052 1.20212 0.90248 1.00753 0.88207 1.60739 1.06912 1.59726 1.02044 1.22759 0.99984 0.89568 0.89964 0.87452 1.22606 0.96421 0.99093 0.96200 1.22425 0.97203 0.82970 1.00715 1.48313 1.49641 1.14234 1.22697 1.19807 0.80838 0.81667 0.84384 1.90687 1.44960 1.35205 1.73876 1.23294 1.03284 1.03559 0.96877 1.85594 1.65823 1.15954 1.25203 1.23185 1.34052 1.04043 1.07977 0.89836 1.26151 0.97304 0.93920 1.01854 1.70185 1.42504 1.05260 1.36829 0.84939 0.78095 0.78057 0.76801 1.19234 1.20353 1.18098 1.23164 0.96459 0.99754 0.85716 0.93026 0.92046 0.90639 0.90298 0.89080 0.72758 0.87403 0.93773 0.83562 0.89476 0.87119 0.90000 0.90424 0.87608 0.87403 0.91986 0.92214 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.90 71.98 0.71 -1.13 16 2 C -0.05 -0.74 6.44 29.85 0.19 -0.54 16 3 C 0.02 0.28 6.58 43.58 0.29 0.57 16 4 N -0.40 -8.09 12.07 -49.55 -0.60 -8.69 16 5 O 0.08 1.38 11.20 71.63 0.80 2.19 16 6 C -0.03 -0.24 12.26 67.18 0.82 0.58 16 7 C -0.21 -2.62 5.84 -19.74 -0.12 -2.74 16 8 C 0.13 1.36 6.04 85.56 0.52 1.88 16 9 N -0.66 -7.07 6.36 -488.40 -3.11 -10.18 16 10 C 0.09 1.09 3.32 46.30 0.15 1.24 16 11 H 0.11 1.22 7.92 -2.39 -0.02 1.20 16 12 C -0.11 -1.11 6.65 31.78 0.21 -0.90 16 13 C 0.09 1.50 6.49 86.73 0.56 2.06 16 14 N -0.61 -15.96 3.33 -811.79 -2.70 -18.66 16 15 C 0.54 20.67 7.87 87.66 0.69 21.36 16 16 O -0.57 -26.96 16.12 -3.04 -0.05 -27.01 16 17 C -0.12 -4.77 5.35 71.24 0.38 -4.39 16 18 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 19 C -0.54 -30.97 9.50 67.95 0.65 -30.33 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.70 5.49 84.86 0.47 1.17 16 22 N -0.91 -55.89 13.22 21.65 0.29 -55.61 16 23 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 24 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 C 0.07 1.51 6.49 86.86 0.56 2.07 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.73 6.06 -2.39 -0.01 0.71 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.17 7.98 -2.39 -0.02 1.15 16 33 H 0.26 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.11 0.73 8.09 -2.38 -0.02 0.71 16 35 H 0.04 0.52 7.98 -2.38 -0.02 0.50 16 36 H 0.34 3.99 6.21 -89.70 -0.56 3.43 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 44 H 0.06 1.44 8.04 -2.39 -0.02 1.42 16 45 H 0.07 1.33 7.80 -2.38 -0.02 1.31 16 Total: -1.00 -80.63 389.48 2.03 -78.60 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.44 Total: 12.91 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 6.09 Total: -9.10 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -6.12 Total: -93.14 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: 0.75 Total: -24.82 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -80.63 2.03 -78.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181096753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.645 kcal (2) G-P(sol) polarization free energy of solvation -80.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds