Wall clock time and date at job start Sat Apr 11 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30255 * 125.61350 * 2 1 4 4 C 1.34481 * 108.69609 * 179.83948 * 3 2 1 5 5 C 1.50702 * 126.16607 * 180.17221 * 4 3 2 6 6 N 1.46909 * 109.46869 * 275.29941 * 5 4 3 7 7 C 1.46899 * 110.99738 * 66.04678 * 6 5 4 8 8 C 1.46895 * 110.99799 * 189.99590 * 6 5 4 9 9 H 1.08997 * 110.89007 * 300.70355 * 8 6 5 10 10 C 1.55157 * 111.00424 * 176.81843 * 8 6 5 11 11 C 1.54363 * 102.92301 * 206.45627 * 10 8 6 12 12 N 1.47025 * 107.28965 * 22.13889 * 11 10 8 13 13 C 1.34779 * 125.64988 * 181.05640 * 12 11 10 14 14 O 1.21278 * 120.00092 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99849 * 0.03912 * 13 12 11 16 16 S 1.80996 * 109.46890 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00019 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00173 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47339 * 119.99946 * 21 19 17 24 24 H 1.48505 * 109.47072 * 240.00542 * 21 19 17 25 25 C 1.47424 * 108.69918 * 1.09442 * 12 11 10 26 26 C 1.34326 * 107.66853 * 0.42558 * 4 3 2 27 27 O 1.33961 * 125.62264 * 180.31085 * 2 1 3 28 28 H 1.09001 * 109.46953 * 179.71420 * 1 2 3 29 29 H 1.09000 * 109.47318 * 299.71018 * 1 2 3 30 30 H 1.09000 * 109.47161 * 59.71649 * 1 2 3 31 31 H 1.09002 * 109.47082 * 35.29228 * 5 4 3 32 32 H 1.08997 * 109.47315 * 155.29925 * 5 4 3 33 33 H 1.08998 * 109.47477 * 60.00140 * 7 6 5 34 34 H 1.09002 * 109.46958 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47475 * 299.99402 * 7 6 5 36 36 H 1.09004 * 110.71732 * 324.79321 * 10 8 6 37 37 H 1.08998 * 110.72076 * 88.05800 * 10 8 6 38 38 H 1.09001 * 109.84994 * 262.73249 * 11 10 8 39 39 H 1.09006 * 110.03047 * 141.65097 * 11 10 8 40 40 H 1.08995 * 109.47183 * 300.00215 * 15 13 12 41 41 H 1.09000 * 109.46876 * 60.00157 * 15 13 12 42 42 H 0.97008 * 119.99581 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36390 * 217.03378 * 25 12 11 44 44 H 1.08999 * 110.36921 * 94.71218 * 25 12 11 45 45 H 1.08008 * 126.44479 * 179.77141 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0036 5 6 4.7570 1.5728 0.0085 6 7 5.0760 1.9709 -1.3692 7 6 4.0109 2.8098 -1.9347 8 6 6.3744 2.6551 -1.4322 9 1 6.3746 3.5468 -0.8053 10 6 6.7482 3.0048 -2.8969 11 6 8.2908 3.0464 -2.8589 12 7 8.7210 2.2503 -1.7001 13 6 9.9965 2.0570 -1.3097 14 8 10.2357 1.3778 -0.3339 15 6 11.1254 2.6850 -2.0858 16 16 12.7040 2.2426 -1.3189 17 6 13.8145 3.0854 -2.3965 18 1 13.4304 3.6550 -3.2297 19 6 15.1829 3.0180 -2.1739 20 7 15.6510 2.3241 -1.1579 21 14 16.3601 3.9120 -3.3158 22 1 15.5877 4.6138 -4.3723 23 1 17.1483 4.9017 -2.5382 24 1 17.2802 2.9308 -3.9452 25 6 7.5262 1.6978 -1.0364 26 6 3.5698 -0.6755 -0.0037 27 8 2.2873 -1.0889 -0.0059 28 1 -0.3633 -1.0277 -0.0051 29 1 -0.3634 0.5093 0.8926 30 1 -0.3633 0.5182 -0.8874 31 1 4.5418 2.4609 0.6027 32 1 5.6070 1.0441 0.4399 33 1 3.8960 3.7086 -1.3289 34 1 4.2723 3.0899 -2.9552 35 1 3.0739 2.2529 -1.9400 36 1 6.4003 2.2293 -3.5793 37 1 6.3423 3.9768 -3.1769 38 1 8.6307 4.0762 -2.7479 39 1 8.6986 2.6184 -3.7747 40 1 11.1064 2.3215 -3.1131 41 1 11.0102 3.7689 -2.0817 42 1 16.6073 2.2767 -1.0025 43 1 7.6610 1.6935 0.0452 44 1 7.3231 0.6899 -1.3982 45 1 4.4470 -1.3057 -0.0067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:42 Heat of formation + Delta-G solvation = 2.575877 kcal Electronic energy + Delta-G solvation = -26259.404789 eV Core-core repulsion = 22405.359573 eV Total energy + Delta-G solvation = -3854.045216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.65447 -40.02877 -38.22638 -36.26645 -34.82540 -32.75810 -32.42606 -31.08288 -29.93026 -28.87670 -28.22033 -26.79390 -25.50195 -24.39567 -23.11404 -21.91149 -21.23078 -20.40422 -19.29560 -17.75193 -17.39674 -17.20277 -16.78820 -16.58962 -15.57418 -15.30444 -15.16915 -14.81703 -14.78044 -14.45684 -14.27803 -13.97910 -13.77818 -13.57167 -13.50058 -13.06565 -12.98631 -12.71204 -12.61834 -12.49789 -12.25053 -11.96375 -11.79710 -11.59231 -11.44911 -11.12686 -11.06664 -11.05794 -11.00124 -10.85083 -10.75374 -9.80416 -9.41752 -9.11375 -9.07096 -8.72537 -8.49626 -8.22616 -6.49858 -6.21521 -3.92026 1.14212 2.22274 2.43971 2.87633 3.06470 3.21758 3.25638 3.31126 3.50372 3.61798 3.82685 4.14623 4.21020 4.37923 4.47496 4.57590 4.76996 4.83627 4.90672 4.96318 5.02061 5.09723 5.13522 5.14588 5.17119 5.22353 5.30166 5.39569 5.49500 5.52814 5.55617 5.60625 5.64062 5.70840 5.75022 5.77303 5.85433 5.95716 5.97434 6.14913 6.38588 6.59930 6.72628 7.41244 7.60145 7.66971 8.35782 8.55596 9.23922 10.85983 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.001830 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.787563 B =15300.733230 C =15910.484829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.479 5.479 4 C -0.006 4.006 5 C 0.132 3.868 6 N -0.527 5.527 7 C 0.027 3.973 8 C 0.067 3.933 9 H 0.062 0.938 10 C -0.121 4.121 11 C 0.104 3.896 12 N -0.626 5.626 13 C 0.549 3.451 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.117 3.883 26 C -0.054 4.054 27 O -0.204 6.204 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.028 0.972 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.322 -1.519 -1.529 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 N -0.210 5.210 4 C -0.126 4.126 5 C 0.004 3.996 6 N -0.251 5.251 7 C -0.121 4.121 8 C -0.042 4.042 9 H 0.079 0.921 10 C -0.159 4.159 11 C -0.020 4.020 12 N -0.364 5.364 13 C 0.338 3.662 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.007 4.007 26 C -0.126 4.126 27 O -0.090 6.090 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -30.926 -2.449 -0.240 31.023 hybrid contribution 0.788 1.430 -1.442 2.178 sum -30.137 -1.019 -1.682 30.201 Atomic orbital electron populations 1.20229 0.81456 1.04666 1.04966 1.26283 0.96505 0.78762 1.00686 1.70315 1.01715 1.30332 1.18615 1.21457 0.92574 0.92716 1.05818 1.20367 0.92543 0.96862 0.89831 1.61985 1.01931 1.42336 1.18885 1.22394 0.94772 0.95504 0.99402 1.22822 0.88444 0.95534 0.97360 0.92061 1.22703 0.94290 1.02751 0.96149 1.21995 0.94239 0.96215 0.89571 1.48418 1.05182 1.52688 1.30076 1.20022 0.81444 0.80234 0.84486 1.90706 1.82766 1.38665 1.26865 1.23503 0.99731 1.03336 1.03121 1.85398 0.91027 1.67714 1.39331 1.22904 0.93230 1.36520 1.15607 0.90866 1.24994 0.97404 0.95395 0.95803 1.70035 1.14049 1.38548 1.27639 0.86113 0.80140 0.79179 0.80038 1.19616 1.20566 1.20560 1.22089 0.83187 0.97093 0.98283 1.24835 0.84752 0.96207 1.06760 1.84458 1.17069 1.37732 1.69782 0.89445 0.88617 0.88600 0.92697 0.88621 0.95370 0.91300 0.90712 0.89410 0.90133 0.91243 0.90964 0.89251 0.89294 0.92242 0.90616 0.90631 0.76648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.21 10.51 36.01 0.38 0.16 16 2 C 0.18 1.55 8.34 -12.94 -0.11 1.44 16 3 N -0.48 -4.88 10.28 -7.36 -0.08 -4.96 16 4 C -0.01 -0.06 5.84 -82.81 -0.48 -0.54 16 5 C 0.13 1.19 5.40 -4.97 -0.03 1.16 16 6 N -0.53 -4.79 4.65 -233.74 -1.09 -5.88 16 7 C 0.03 0.23 9.15 60.06 0.55 0.78 16 8 C 0.07 0.64 2.71 -65.57 -0.18 0.46 16 9 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 10 C -0.12 -1.02 5.21 -24.88 -0.13 -1.15 16 11 C 0.10 1.12 6.49 -3.04 -0.02 1.10 16 12 N -0.63 -9.14 3.33 -170.49 -0.57 -9.71 16 13 C 0.55 10.73 7.87 -10.98 -0.09 10.64 16 14 O -0.52 -12.05 16.12 5.56 0.09 -11.96 16 15 C -0.15 -3.03 5.35 36.01 0.19 -2.84 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 17 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 18 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 21 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.12 1.42 5.47 -2.53 -0.01 1.41 16 26 C -0.05 -0.47 12.08 29.35 0.35 -0.11 16 27 O -0.20 -1.86 10.77 5.39 0.06 -1.80 16 28 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.10 0.79 6.80 -51.93 -0.35 0.44 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.51 6.92 -51.93 -0.36 0.15 16 35 H 0.07 0.72 6.52 -51.93 -0.34 0.38 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.55 8.01 -51.93 -0.42 0.13 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 44 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.22 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -36.36 387.02 -8.53 -44.89 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.91 Total: -2.97 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 0.63 Total: -0.48 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -1.00 Total: -46.04 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.15 Total: -13.76 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.36 -8.53 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.468 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds