Wall clock time and date at job start Sat Apr 11 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30255 * 125.61350 * 2 1 4 4 C 1.34481 * 108.69609 * 179.83948 * 3 2 1 5 5 C 1.50702 * 126.16607 * 180.17221 * 4 3 2 6 6 N 1.46909 * 109.46869 * 275.29941 * 5 4 3 7 7 C 1.46899 * 110.99738 * 66.04678 * 6 5 4 8 8 C 1.46895 * 110.99799 * 189.99590 * 6 5 4 9 9 H 1.08997 * 110.89007 * 300.70355 * 8 6 5 10 10 C 1.55157 * 111.00424 * 176.81843 * 8 6 5 11 11 C 1.54363 * 102.92301 * 206.45627 * 10 8 6 12 12 N 1.47025 * 107.28965 * 22.13889 * 11 10 8 13 13 C 1.34779 * 125.64988 * 181.05640 * 12 11 10 14 14 O 1.21278 * 120.00092 * 180.02562 * 13 12 11 15 15 C 1.50702 * 119.99849 * 0.03912 * 13 12 11 16 16 S 1.80996 * 109.46890 * 180.02562 * 15 13 12 17 17 C 1.76205 * 100.00019 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99892 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00173 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99628 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00265 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46872 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47339 * 119.99946 * 21 19 17 24 24 H 1.48505 * 109.47072 * 240.00542 * 21 19 17 25 25 C 1.47424 * 108.69918 * 1.09442 * 12 11 10 26 26 C 1.34326 * 107.66853 * 0.42558 * 4 3 2 27 27 O 1.33961 * 125.62264 * 180.31085 * 2 1 3 28 28 H 1.09001 * 109.46953 * 179.71420 * 1 2 3 29 29 H 1.09000 * 109.47318 * 299.71018 * 1 2 3 30 30 H 1.09000 * 109.47161 * 59.71649 * 1 2 3 31 31 H 1.09002 * 109.47082 * 35.29228 * 5 4 3 32 32 H 1.08997 * 109.47315 * 155.29925 * 5 4 3 33 33 H 1.08998 * 109.47477 * 60.00140 * 7 6 5 34 34 H 1.09002 * 109.46958 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.47475 * 299.99402 * 7 6 5 36 36 H 1.09004 * 110.71732 * 324.79321 * 10 8 6 37 37 H 1.08998 * 110.72076 * 88.05800 * 10 8 6 38 38 H 1.09001 * 109.84994 * 262.73249 * 11 10 8 39 39 H 1.09006 * 110.03047 * 141.65097 * 11 10 8 40 40 H 1.08995 * 109.47183 * 300.00215 * 15 13 12 41 41 H 1.09000 * 109.46876 * 60.00157 * 15 13 12 42 42 H 0.97008 * 119.99581 * 179.97438 * 20 19 17 43 43 H 1.09000 * 110.36390 * 217.03378 * 25 12 11 44 44 H 1.08999 * 110.36921 * 94.71218 * 25 12 11 45 45 H 1.08008 * 126.44479 * 179.77141 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 0.0036 5 6 4.7570 1.5728 0.0085 6 7 5.0760 1.9709 -1.3692 7 6 4.0109 2.8098 -1.9347 8 6 6.3744 2.6551 -1.4322 9 1 6.3746 3.5468 -0.8053 10 6 6.7482 3.0048 -2.8969 11 6 8.2908 3.0464 -2.8589 12 7 8.7210 2.2503 -1.7001 13 6 9.9965 2.0570 -1.3097 14 8 10.2357 1.3778 -0.3339 15 6 11.1254 2.6850 -2.0858 16 16 12.7040 2.2426 -1.3189 17 6 13.8145 3.0854 -2.3965 18 1 13.4304 3.6550 -3.2297 19 6 15.1829 3.0180 -2.1739 20 7 15.6510 2.3241 -1.1579 21 14 16.3601 3.9120 -3.3158 22 1 15.5877 4.6138 -4.3723 23 1 17.1483 4.9017 -2.5382 24 1 17.2802 2.9308 -3.9452 25 6 7.5262 1.6978 -1.0364 26 6 3.5698 -0.6755 -0.0037 27 8 2.2873 -1.0889 -0.0059 28 1 -0.3633 -1.0277 -0.0051 29 1 -0.3634 0.5093 0.8926 30 1 -0.3633 0.5182 -0.8874 31 1 4.5418 2.4609 0.6027 32 1 5.6070 1.0441 0.4399 33 1 3.8960 3.7086 -1.3289 34 1 4.2723 3.0899 -2.9552 35 1 3.0739 2.2529 -1.9400 36 1 6.4003 2.2293 -3.5793 37 1 6.3423 3.9768 -3.1769 38 1 8.6307 4.0762 -2.7479 39 1 8.6986 2.6184 -3.7747 40 1 11.1064 2.3215 -3.1131 41 1 11.0102 3.7689 -2.0817 42 1 16.6073 2.2767 -1.0025 43 1 7.6610 1.6935 0.0452 44 1 7.3231 0.6899 -1.3982 45 1 4.4470 -1.3057 -0.0067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:41 Heat of formation + Delta-G solvation = -24.927876 kcal Electronic energy + Delta-G solvation = -26260.597441 eV Core-core repulsion = 22405.359573 eV Total energy + Delta-G solvation = -3855.237868 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.29735 -41.17867 -39.37177 -37.26477 -35.56900 -34.58867 -33.36743 -32.21163 -31.00700 -29.50698 -29.39782 -27.67070 -27.43233 -25.27372 -24.09723 -22.54566 -21.92100 -21.20113 -20.67747 -19.58113 -18.17903 -18.06915 -17.84735 -17.61674 -16.88813 -16.71744 -16.35309 -16.03358 -15.91352 -15.55070 -15.35894 -14.97777 -14.72916 -14.50539 -14.35932 -13.97445 -13.87287 -13.78990 -13.56221 -13.38312 -13.27170 -13.15134 -12.95625 -12.91313 -12.69083 -12.57853 -12.34510 -12.18736 -11.89567 -11.81241 -11.70772 -11.53359 -11.15963 -10.99877 -10.28425 -9.76030 -9.71932 -9.44020 -8.68288 -8.35039 -6.13659 0.51172 1.22739 1.41770 1.43866 1.53693 1.55462 1.58899 1.88546 2.04855 2.26898 2.87552 2.99310 3.14925 3.19154 3.39449 3.62068 3.72967 3.87710 3.98160 4.04919 4.20192 4.24723 4.32191 4.38066 4.41666 4.44889 4.58439 4.61330 4.62653 4.66643 4.69610 4.78116 4.83091 4.87078 4.93708 4.96263 5.03541 5.09002 5.15724 5.30029 5.38933 5.41933 5.87361 5.98461 6.19858 6.36131 6.76764 7.06252 7.08756 8.74536 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.001830 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.787563 B =15300.733230 C =15910.484829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.183 3.817 3 N -0.506 5.506 4 C -0.024 4.024 5 C 0.135 3.865 6 N -0.527 5.527 7 C 0.033 3.967 8 C 0.078 3.922 9 H 0.063 0.937 10 C -0.108 4.108 11 C 0.093 3.907 12 N -0.617 5.617 13 C 0.547 3.453 14 O -0.567 6.567 15 C -0.120 4.120 16 S -0.151 6.151 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.115 3.885 26 C -0.059 4.059 27 O -0.213 6.213 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.020 -0.230 -3.810 33.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.025 4.025 3 N -0.237 5.237 4 C -0.143 4.143 5 C 0.007 3.993 6 N -0.252 5.252 7 C -0.115 4.115 8 C -0.031 4.031 9 H 0.080 0.920 10 C -0.146 4.146 11 C -0.029 4.029 12 N -0.352 5.352 13 C 0.336 3.664 14 O -0.445 6.445 15 C -0.271 4.271 16 S 0.076 5.924 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.180 1.180 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.008 4.008 26 C -0.130 4.130 27 O -0.100 6.100 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.045 0.955 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -32.686 -1.137 -2.553 32.805 hybrid contribution 1.125 1.006 -0.724 1.673 sum -31.561 -0.131 -3.278 31.731 Atomic orbital electron populations 1.20480 0.78572 1.06185 1.06001 1.27203 0.97975 0.78192 0.99086 1.70309 1.02147 1.31312 1.19980 1.21594 0.92706 0.93282 1.06687 1.20335 0.92589 0.96603 0.89795 1.61977 1.01889 1.42443 1.18901 1.22353 0.93973 0.95029 1.00136 1.22681 0.87603 0.94534 0.98250 0.91959 1.22696 0.92216 1.04490 0.95156 1.22358 0.96118 0.96211 0.88236 1.48341 1.04146 1.51863 1.30825 1.19766 0.82780 0.79997 0.83893 1.90685 1.83802 1.41066 1.28969 1.23298 0.96110 1.04452 1.03196 1.85589 0.96134 1.68903 1.41785 1.23231 0.93784 1.36572 1.15726 0.89848 1.26140 0.99422 0.96086 0.97488 1.70197 1.14637 1.40196 1.29758 0.84889 0.77338 0.77809 0.77801 1.17952 1.19915 1.19917 1.22216 0.83173 0.97974 0.97483 1.25257 0.85254 0.96292 1.06225 1.84474 1.17361 1.38198 1.69973 0.87706 0.87505 0.87414 0.93372 0.88406 0.95453 0.89718 0.91865 0.88752 0.87453 0.90080 0.89949 0.87468 0.87457 0.91978 0.91913 0.90437 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.18 2.90 8.34 88.34 0.74 3.64 16 3 N -0.51 -10.07 10.28 -291.98 -3.00 -13.07 16 4 C -0.02 -0.45 5.84 41.26 0.24 -0.21 16 5 C 0.13 2.37 5.40 85.56 0.46 2.83 16 6 N -0.53 -8.75 4.65 -893.43 -4.16 -12.91 16 7 C 0.03 0.49 9.15 127.69 1.17 1.66 16 8 C 0.08 1.32 2.71 46.31 0.13 1.45 16 9 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 10 C -0.11 -1.44 5.21 31.80 0.17 -1.27 16 11 C 0.09 1.74 6.49 86.74 0.56 2.30 16 12 N -0.62 -17.24 3.33 -811.70 -2.70 -19.94 16 13 C 0.55 21.38 7.87 87.66 0.69 22.07 16 14 O -0.57 -27.36 16.12 -3.02 -0.05 -27.41 16 15 C -0.12 -4.89 5.35 71.24 0.38 -4.51 16 16 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 17 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 21 Si 1.00 43.62 29.55 68.60 2.03 45.64 16 22 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 C 0.11 2.69 5.47 86.86 0.47 3.16 16 26 C -0.06 -0.99 12.08 66.93 0.81 -0.18 16 27 O -0.21 -3.74 10.77 -3.63 -0.04 -3.78 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.10 1.62 6.80 -2.39 -0.02 1.60 16 33 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 0.98 6.92 -2.39 -0.02 0.97 16 35 H 0.06 1.13 6.52 -2.39 -0.02 1.12 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.11 0.96 8.01 -2.39 -0.02 0.94 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 41 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 42 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 43 H 0.06 1.65 7.69 -2.39 -0.02 1.63 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.24 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -81.50 387.02 -0.13 -81.64 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.98 Total: 13.52 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 7.68 Total: 1.93 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -9.57 Total: -101.84 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -0.09 Total: -31.19 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -81.50 -0.13 -81.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.708 kcal (2) G-P(sol) polarization free energy of solvation -81.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds