Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30259 * 125.61862 * 2 1 4 4 C 1.34474 * 108.69722 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.16395 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47282 * 275.02984 * 5 4 3 7 7 C 1.46897 * 110.99994 * 66.04542 * 6 5 4 8 8 C 1.46905 * 110.99766 * 189.99868 * 6 5 4 9 9 H 1.09000 * 110.88682 * 301.50117 * 8 6 5 10 10 C 1.55153 * 111.00453 * 65.38706 * 8 6 5 11 11 C 1.54431 * 102.89428 * 153.59310 * 10 8 6 12 12 N 1.47019 * 107.27808 * 337.81156 * 11 10 8 13 13 C 1.34781 * 125.64871 * 178.90367 * 12 11 10 14 14 O 1.21279 * 120.00230 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99781 * 0.04260 * 13 12 11 16 16 S 1.80996 * 109.47193 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00059 * 179.97438 * 16 15 13 18 18 H 1.08004 * 120.00209 * 0.02562 * 17 16 15 19 19 C 1.38797 * 120.00195 * 180.02562 * 17 16 15 20 20 N 1.31635 * 120.00246 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00271 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47027 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47260 * 119.99971 * 21 19 17 24 24 H 1.48506 * 109.47333 * 240.00278 * 21 19 17 25 25 C 1.47420 * 108.70658 * 358.94071 * 12 11 10 26 26 C 1.34332 * 107.67500 * 0.26810 * 4 3 2 27 27 O 1.33969 * 125.61704 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46982 * 90.00335 * 1 2 3 29 29 H 1.08998 * 109.46764 * 209.99712 * 1 2 3 30 30 H 1.08994 * 109.47057 * 329.99757 * 1 2 3 31 31 H 1.08997 * 109.47284 * 155.02407 * 5 4 3 32 32 H 1.09007 * 109.46966 * 35.03151 * 5 4 3 33 33 H 1.09007 * 109.47279 * 183.81588 * 7 6 5 34 34 H 1.09002 * 109.47318 * 303.81682 * 7 6 5 35 35 H 1.08999 * 109.47149 * 63.82150 * 7 6 5 36 36 H 1.09002 * 110.71653 * 271.97371 * 10 8 6 37 37 H 1.08998 * 110.72044 * 35.25097 * 10 8 6 38 38 H 1.08997 * 109.87630 * 218.38977 * 11 10 8 39 39 H 1.08994 * 110.00451 * 97.30298 * 11 10 8 40 40 H 1.08998 * 109.47131 * 300.00377 * 15 13 12 41 41 H 1.09002 * 109.46919 * 59.99611 * 15 13 12 42 42 H 0.96989 * 120.00351 * 179.97438 * 20 19 17 43 43 H 1.09001 * 110.36642 * 265.28614 * 25 12 11 44 44 H 1.09002 * 110.46003 * 143.01323 * 25 12 11 45 45 H 1.07999 * 126.44707 * 179.73775 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 4.7571 1.5727 -0.0013 6 7 5.0750 1.9636 -1.3811 7 6 4.0096 2.7996 -1.9502 8 6 6.3735 2.6474 -1.4486 9 1 6.3788 3.5346 -0.8154 10 6 7.5293 1.6851 -1.0676 11 6 8.7384 2.2844 -1.8183 12 7 8.2078 3.0950 -2.9241 13 6 8.9446 3.8022 -3.8037 14 8 8.3978 4.4381 -4.6797 15 6 10.4479 3.8024 -3.6987 16 16 11.1442 4.8356 -5.0116 17 6 12.8619 4.6608 -4.6600 18 1 13.1838 4.0485 -3.8306 19 6 13.8014 5.3102 -5.4488 20 7 13.4092 6.0570 -6.4593 21 14 15.6224 5.1256 -5.0755 22 1 15.7987 4.2408 -3.8959 23 1 16.3103 4.5297 -6.2490 24 1 16.2058 6.4598 -4.7845 25 6 6.7363 3.0070 -2.9111 26 6 3.5699 -0.6757 -0.0069 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 5.6073 1.0462 0.4323 32 1 4.5424 2.4638 0.5886 33 1 4.2376 3.0187 -2.9934 34 1 3.0596 2.2685 -1.8897 35 1 3.9409 3.7320 -1.3898 36 1 7.6997 1.6943 0.0090 37 1 7.3206 0.6741 -1.4175 38 1 9.3639 1.4836 -2.2126 39 1 9.3214 2.9125 -1.1448 40 1 10.7444 4.1992 -2.7278 41 1 10.8196 2.7830 -3.8034 42 1 14.0656 6.5111 -7.0103 43 1 6.3971 2.2242 -3.5896 44 1 6.2948 3.9647 -3.1870 45 1 4.4470 -1.3058 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -25.289836 kcal Electronic energy + Delta-G solvation = -26188.468795 eV Core-core repulsion = 22333.215230 eV Total energy + Delta-G solvation = -3855.253564 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.25992 -41.18201 -39.37505 -37.25825 -35.54522 -34.58950 -33.31003 -32.27618 -31.00500 -29.86581 -28.81478 -27.69300 -27.56263 -25.52029 -23.78047 -22.55943 -21.98691 -21.15459 -20.69655 -19.59482 -18.17738 -18.07794 -17.82943 -17.57981 -16.88933 -16.70948 -16.34405 -16.05854 -15.81418 -15.57211 -15.32259 -15.01048 -14.80024 -14.50270 -14.28315 -13.99109 -13.86129 -13.79292 -13.43351 -13.39455 -13.31361 -13.15209 -13.09144 -12.91254 -12.71331 -12.58540 -12.26292 -12.21907 -11.84335 -11.80292 -11.71079 -11.48419 -11.16028 -11.01521 -10.28446 -9.73755 -9.71728 -9.43722 -8.68928 -8.34943 -6.13967 0.54956 1.22244 1.41994 1.43750 1.52763 1.56079 1.61175 1.92408 2.04731 2.26856 2.91389 2.99384 3.15427 3.21670 3.39141 3.62905 3.76764 3.88524 4.01249 4.07113 4.19189 4.24965 4.34165 4.39056 4.42781 4.44137 4.54364 4.60142 4.64782 4.65784 4.69237 4.79269 4.85210 4.87242 4.96380 4.99010 4.99710 5.09941 5.19571 5.30238 5.40334 5.41844 5.86406 5.98091 6.19865 6.36162 6.81460 7.06151 7.07879 8.74721 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.038465 B = 0.001755 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.763911 B =15952.388014 C =16431.139344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.180 3.820 3 N -0.512 5.512 4 C -0.030 4.030 5 C 0.139 3.861 6 N -0.526 5.526 7 C 0.028 3.972 8 C 0.079 3.921 9 H 0.062 0.938 10 C -0.108 4.108 11 C 0.091 3.909 12 N -0.617 5.617 13 C 0.546 3.454 14 O -0.569 6.569 15 C -0.118 4.118 16 S -0.154 6.154 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.116 3.884 26 C -0.053 4.053 27 O -0.214 6.214 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.025 0.975 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.377 -17.683 20.693 35.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.027 4.027 3 N -0.243 5.243 4 C -0.149 4.149 5 C 0.012 3.988 6 N -0.251 5.251 7 C -0.121 4.121 8 C -0.030 4.030 9 H 0.080 0.920 10 C -0.146 4.146 11 C -0.031 4.031 12 N -0.352 5.352 13 C 0.334 3.666 14 O -0.448 6.448 15 C -0.269 4.269 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.103 0.897 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.822 3.178 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.007 4.007 26 C -0.124 4.124 27 O -0.101 6.101 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.140 0.860 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -23.320 -16.455 18.951 34.260 hybrid contribution 1.748 -0.157 0.928 1.985 sum -21.572 -16.613 19.879 33.713 Atomic orbital electron populations 1.20461 0.78966 1.06230 1.05751 1.27092 0.97875 0.78284 0.99470 1.70336 1.02677 1.31467 1.19842 1.21717 0.92659 0.93583 1.06953 1.20371 0.93129 0.96631 0.88677 1.62002 1.01418 1.42072 1.19599 1.22352 0.94986 0.95333 0.99387 1.22684 0.89654 0.96512 0.94194 0.91965 1.22759 0.90364 0.99474 1.01969 1.22415 0.98093 0.94899 0.87711 1.48354 1.07262 1.48540 1.31028 1.19830 0.88611 0.77857 0.80303 1.90688 1.73763 1.44360 1.36014 1.23286 0.93642 1.05338 1.04601 1.85630 1.04731 1.63100 1.39237 1.23231 0.91083 1.35895 1.19035 0.89746 1.26155 1.05248 0.93772 0.94004 1.70195 1.36556 1.30128 1.17983 0.84878 0.75680 0.78463 0.78740 1.17850 1.19928 1.19949 1.22152 0.79641 1.01070 0.97836 1.25391 0.85252 0.96124 1.05583 1.84470 1.17609 1.38078 1.69964 0.87862 0.87523 0.87642 0.85991 0.93616 0.91940 0.91264 0.95589 0.86715 0.88189 0.89854 0.89959 0.87325 0.87341 0.91983 0.91003 0.92648 0.73677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.18 2.70 8.34 88.34 0.74 3.44 16 3 N -0.51 -9.76 10.19 -291.97 -2.98 -12.73 16 4 C -0.03 -0.49 5.84 41.26 0.24 -0.25 16 5 C 0.14 1.85 5.40 85.56 0.46 2.31 16 6 N -0.53 -8.66 4.65 -893.43 -4.16 -12.82 16 7 C 0.03 0.54 9.14 127.69 1.17 1.71 16 8 C 0.08 1.32 2.71 46.31 0.13 1.44 16 9 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 10 C -0.11 -1.23 5.51 31.82 0.18 -1.06 16 11 C 0.09 1.63 6.49 86.77 0.56 2.20 16 12 N -0.62 -17.60 3.33 -811.60 -2.70 -20.30 16 13 C 0.55 21.74 7.87 87.66 0.69 22.43 16 14 O -0.57 -28.29 16.12 -3.03 -0.05 -28.34 16 15 C -0.12 -4.84 5.35 71.24 0.38 -4.46 16 16 S -0.15 -8.75 20.57 -56.49 -1.16 -9.91 16 17 C -0.54 -31.31 9.50 67.95 0.65 -30.66 16 18 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 19 C 0.01 0.73 5.49 84.86 0.47 1.20 16 20 N -0.91 -56.47 13.22 21.65 0.29 -56.19 16 21 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 22 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.12 2.91 5.18 86.86 0.45 3.36 16 26 C -0.05 -0.67 12.08 66.93 0.81 0.14 16 27 O -0.21 -3.27 10.78 -3.82 -0.04 -3.32 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.12 0.88 6.90 -2.39 -0.02 0.86 16 32 H 0.05 0.69 8.12 -2.38 -0.02 0.67 16 33 H 0.06 1.29 7.03 -2.38 -0.02 1.28 16 34 H 0.07 1.47 6.33 -2.39 -0.02 1.45 16 35 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.11 0.65 7.89 -2.39 -0.02 0.63 16 37 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 41 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 42 H 0.27 15.52 8.31 -92.72 -0.77 14.75 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.05 1.62 7.91 -2.39 -0.02 1.60 16 45 H 0.25 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -84.05 387.06 -0.12 -84.18 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.98 Total: 11.58 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 7.66 Total: 2.21 kcal Atomic # 7 Polarization: -92.49 SS G_CDS: -9.54 Total: -102.04 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.09 Total: -31.66 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.91 kcal Total: -84.05 -0.12 -84.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.886 kcal (2) G-P(sol) polarization free energy of solvation -84.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds