Wall clock time and date at job start Sat Apr 11 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30257 * 125.61333 * 2 1 4 4 C 1.34482 * 108.69553 * 180.02562 * 3 2 1 5 5 C 1.34319 * 107.67166 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.44503 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47091 * 89.99855 * 6 5 4 8 8 C 1.46902 * 111.00053 * 66.04995 * 7 6 5 9 9 C 1.46904 * 110.99840 * 189.99953 * 7 6 5 10 10 H 1.09002 * 110.88699 * 300.70246 * 9 7 6 11 11 C 1.55156 * 111.00397 * 176.81833 * 9 7 6 12 12 C 1.54428 * 102.89529 * 206.40896 * 11 9 7 13 13 N 1.47023 * 107.28154 * 22.18672 * 12 11 9 14 14 C 1.34772 * 125.64623 * 181.02254 * 13 12 11 15 15 O 1.21286 * 119.99643 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00407 * 0.04362 * 14 13 12 17 17 S 1.80999 * 109.47184 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99883 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99965 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00128 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47453 * 89.99822 * 22 20 18 24 24 H 1.48507 * 109.47356 * 210.00412 * 22 20 18 25 25 H 1.48501 * 109.46979 * 329.99902 * 22 20 18 26 26 C 1.47430 * 108.69895 * 1.06294 * 13 12 11 27 27 O 1.33967 * 125.62380 * 180.33824 * 2 1 3 28 28 H 1.09000 * 109.47018 * 89.97679 * 1 2 3 29 29 H 1.09001 * 109.46633 * 209.96997 * 1 2 3 30 30 H 1.08998 * 109.47288 * 329.97222 * 1 2 3 31 31 H 1.07997 * 126.16083 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.46589 * 329.99885 * 6 5 4 33 33 H 1.09005 * 109.46944 * 210.00584 * 6 5 4 34 34 H 1.08998 * 109.46920 * 183.94908 * 8 7 6 35 35 H 1.08994 * 109.46846 * 303.95113 * 8 7 6 36 36 H 1.08998 * 109.47009 * 63.95154 * 8 7 6 37 37 H 1.09001 * 110.72614 * 324.75382 * 11 9 7 38 38 H 1.09002 * 110.71438 * 88.02479 * 11 9 7 39 39 H 1.08996 * 109.87511 * 262.77039 * 12 11 9 40 40 H 1.08994 * 110.00498 * 141.68055 * 12 11 9 41 41 H 1.08997 * 109.47356 * 300.00085 * 16 14 13 42 42 H 1.09002 * 109.47140 * 59.99747 * 16 14 13 43 43 H 0.97000 * 120.00607 * 180.02562 * 21 20 18 44 44 H 1.09008 * 110.36125 * 217.02920 * 26 13 12 45 45 H 1.09000 * 110.45875 * 94.76152 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 3.5699 -0.6755 -0.0015 6 6 4.7938 -1.5547 -0.0018 7 7 5.1912 -1.8413 1.3830 8 6 4.1761 -2.6559 2.0641 9 6 6.5069 -2.4932 1.4289 10 1 6.4963 -3.4295 0.8709 11 6 6.9624 -2.7239 2.8940 12 6 8.5022 -2.7391 2.7779 13 7 8.8541 -2.0240 1.5424 14 6 10.1031 -1.8357 1.0725 15 8 10.2764 -1.2271 0.0378 16 6 11.2844 -2.3817 1.8323 17 16 12.8111 -1.9687 0.9521 18 6 13.9944 -2.7064 2.0294 19 1 13.6667 -3.2179 2.9223 20 6 15.3477 -2.6302 1.7303 21 7 15.7471 -2.0064 0.6422 22 14 16.6021 -3.4129 2.8718 23 1 16.8428 -4.8175 2.4543 24 1 17.8753 -2.6514 2.8049 25 1 16.0854 -3.3918 4.2639 26 6 7.6144 -1.5461 0.9034 27 8 2.2874 -1.0889 -0.0064 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 4.4156 1.3164 -0.0003 32 1 5.6082 -1.0434 -0.5152 33 1 4.5698 -2.4891 -0.5165 34 1 4.4613 -2.7944 3.1070 35 1 3.2118 -2.1501 2.0153 36 1 4.1020 -3.6274 1.5755 37 1 6.6319 -1.9059 3.5341 38 1 6.5935 -3.6796 3.2665 39 1 8.8597 -3.7675 2.7255 40 1 8.9459 -2.2358 3.6368 41 1 11.3094 -1.9427 2.8296 42 1 11.1945 -3.4649 1.9144 43 1 16.6927 -1.9534 0.4329 44 1 7.6938 -1.6203 -0.1812 45 1 7.4057 -0.5178 1.1984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188965524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:48 Heat of formation + Delta-G solvation = 2.665608 kcal Electronic energy + Delta-G solvation = -26279.037376 eV Core-core repulsion = 22424.996051 eV Total energy + Delta-G solvation = -3854.041325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.65146 -40.09401 -38.27319 -36.11751 -35.05921 -32.83011 -32.43555 -31.25208 -30.04174 -29.28808 -28.32287 -26.25972 -25.50120 -24.27617 -23.14536 -22.40150 -21.26556 -20.56490 -19.35575 -17.78188 -17.37626 -17.27879 -16.80675 -16.61809 -15.60492 -15.35479 -15.22172 -14.85210 -14.80079 -14.46139 -14.10561 -13.96007 -13.81057 -13.59679 -13.53521 -13.23176 -12.94430 -12.85581 -12.65593 -12.56126 -12.50678 -12.12954 -11.83359 -11.69284 -11.54320 -11.25262 -11.21242 -11.06730 -11.02567 -10.83109 -10.76902 -9.82519 -9.44816 -9.12088 -9.07192 -8.85526 -8.53971 -8.24365 -6.51065 -6.22171 -3.93017 1.06320 2.23960 2.38119 2.82193 3.03403 3.21827 3.23859 3.29451 3.46365 3.65715 3.73509 4.05035 4.19902 4.29645 4.40488 4.58733 4.68954 4.73160 4.84096 4.89287 4.95902 4.98305 5.02624 5.07661 5.10594 5.13063 5.17526 5.21619 5.43878 5.47025 5.50356 5.56128 5.58886 5.64788 5.67732 5.72619 5.78610 5.92682 6.03485 6.12752 6.31875 6.40865 6.55600 7.41694 7.58762 7.62906 8.34602 8.52511 9.23037 10.85266 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.001828 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.575867 B =15313.646332 C =15907.840181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.186 3.814 3 N -0.485 5.485 4 C -0.016 4.016 5 C -0.042 4.042 6 C 0.137 3.863 7 N -0.527 5.527 8 C 0.024 3.976 9 C 0.068 3.932 10 H 0.064 0.936 11 C -0.121 4.121 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.550 3.450 15 O -0.515 6.515 16 C -0.147 4.147 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.116 3.884 27 O -0.204 6.204 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.185 0.815 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.076 0.924 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.861 -1.867 3.185 31.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.215 5.215 4 C -0.155 4.155 5 C -0.095 4.095 6 C 0.010 3.990 7 N -0.252 5.252 8 C -0.124 4.124 9 C -0.041 4.041 10 H 0.082 0.918 11 C -0.159 4.159 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.338 3.662 15 O -0.389 6.389 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.008 4.008 27 O -0.091 6.091 28 H 0.110 0.890 29 H 0.106 0.894 30 H 0.119 0.881 31 H 0.202 0.798 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -30.560 0.113 1.750 30.610 hybrid contribution 0.840 -2.640 1.575 3.187 sum -29.720 -2.527 3.325 30.012 Atomic orbital electron populations 1.20252 0.81403 1.05084 1.04653 1.26300 0.96434 0.78773 1.00607 1.70485 1.02244 1.30271 1.18449 1.23094 0.94949 0.92983 1.04504 1.23121 0.83026 0.95401 1.07934 1.20519 0.90625 0.97374 0.90521 1.61997 1.02176 1.46591 1.14430 1.22427 0.95166 0.95297 0.99550 1.22845 0.87789 0.95923 0.97549 0.91817 1.22722 0.94180 1.03180 0.95812 1.22003 0.94801 0.97436 0.87783 1.48407 1.05295 1.57556 1.25121 1.20031 0.81921 0.79114 0.85104 1.90714 1.84235 1.40308 1.23619 1.23503 0.98917 1.03727 1.03558 1.85406 0.91708 1.73734 1.32550 1.22859 0.93080 1.41337 1.11091 0.90920 1.24989 0.97667 0.95153 0.95748 1.70016 1.16327 1.39920 1.23985 0.86166 0.79889 0.79087 0.80342 1.20279 1.20731 1.19694 1.22100 0.82502 0.97907 0.98285 1.84376 1.16782 1.37877 1.70114 0.88983 0.89446 0.88083 0.79755 0.86853 0.92507 0.90553 0.91406 0.95123 0.89285 0.90063 0.91185 0.90880 0.89226 0.89295 0.92169 0.90529 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.14 16 2 C 0.19 1.65 8.34 -12.94 -0.11 1.54 16 3 N -0.48 -5.35 11.29 -11.10 -0.13 -5.47 16 4 C -0.02 -0.16 11.80 -17.77 -0.21 -0.37 16 5 C -0.04 -0.39 5.94 -35.69 -0.21 -0.60 16 6 C 0.14 1.08 5.41 -4.98 -0.03 1.05 16 7 N -0.53 -4.23 4.65 -233.75 -1.09 -5.32 16 8 C 0.02 0.16 9.16 60.07 0.55 0.71 16 9 C 0.07 0.57 2.71 -65.56 -0.18 0.40 16 10 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 11 C -0.12 -0.92 5.24 -24.84 -0.13 -1.05 16 12 C 0.10 1.06 6.49 -3.01 -0.02 1.04 16 13 N -0.63 -8.83 3.33 -170.46 -0.57 -9.40 16 14 C 0.55 10.54 7.87 -10.99 -0.09 10.45 16 15 O -0.51 -11.88 16.12 5.55 0.09 -11.79 16 16 C -0.15 -2.99 5.35 36.00 0.19 -2.80 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 22 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C 0.12 1.33 5.47 -2.53 -0.01 1.32 16 27 O -0.20 -1.93 10.10 5.37 0.05 -1.88 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.11 0.83 6.80 -51.93 -0.35 0.48 16 33 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 7.11 -51.93 -0.37 0.10 16 35 H 0.07 0.53 6.64 -51.93 -0.34 0.19 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.08 0.94 7.69 -51.92 -0.40 0.54 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -36.34 387.60 -8.89 -45.23 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -6.93 Total: -3.17 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 0.34 Total: -1.11 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: -1.05 Total: -45.59 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.14 Total: -13.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.34 -8.89 -45.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188965524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.894 kcal (2) G-P(sol) polarization free energy of solvation -36.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds