Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30257 * 125.61333 * 2 1 4 4 C 1.34482 * 108.69553 * 180.02562 * 3 2 1 5 5 C 1.34319 * 107.67166 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.44503 * 180.02562 * 5 4 3 7 7 N 1.46893 * 109.47091 * 89.99855 * 6 5 4 8 8 C 1.46902 * 111.00053 * 66.04995 * 7 6 5 9 9 C 1.46904 * 110.99840 * 189.99953 * 7 6 5 10 10 H 1.09002 * 110.88699 * 300.70246 * 9 7 6 11 11 C 1.55156 * 111.00397 * 176.81833 * 9 7 6 12 12 C 1.54428 * 102.89529 * 206.40896 * 11 9 7 13 13 N 1.47023 * 107.28154 * 22.18672 * 12 11 9 14 14 C 1.34772 * 125.64623 * 181.02254 * 13 12 11 15 15 O 1.21286 * 119.99643 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00407 * 0.04362 * 14 13 12 17 17 S 1.80999 * 109.47184 * 179.97438 * 16 14 13 18 18 C 1.76208 * 99.99883 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99861 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99965 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00007 * 0.02562 * 20 18 17 22 22 Si 1.86790 * 120.00128 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47453 * 89.99822 * 22 20 18 24 24 H 1.48507 * 109.47356 * 210.00412 * 22 20 18 25 25 H 1.48501 * 109.46979 * 329.99902 * 22 20 18 26 26 C 1.47430 * 108.69895 * 1.06294 * 13 12 11 27 27 O 1.33967 * 125.62380 * 180.33824 * 2 1 3 28 28 H 1.09000 * 109.47018 * 89.97679 * 1 2 3 29 29 H 1.09001 * 109.46633 * 209.96997 * 1 2 3 30 30 H 1.08998 * 109.47288 * 329.97222 * 1 2 3 31 31 H 1.07997 * 126.16083 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.46589 * 329.99885 * 6 5 4 33 33 H 1.09005 * 109.46944 * 210.00584 * 6 5 4 34 34 H 1.08998 * 109.46920 * 183.94908 * 8 7 6 35 35 H 1.08994 * 109.46846 * 303.95113 * 8 7 6 36 36 H 1.08998 * 109.47009 * 63.95154 * 8 7 6 37 37 H 1.09001 * 110.72614 * 324.75382 * 11 9 7 38 38 H 1.09002 * 110.71438 * 88.02479 * 11 9 7 39 39 H 1.08996 * 109.87511 * 262.77039 * 12 11 9 40 40 H 1.08994 * 110.00498 * 141.68055 * 12 11 9 41 41 H 1.08997 * 109.47356 * 300.00085 * 16 14 13 42 42 H 1.09002 * 109.47140 * 59.99747 * 16 14 13 43 43 H 0.97000 * 120.00607 * 180.02562 * 21 20 18 44 44 H 1.09008 * 110.36125 * 217.02920 * 26 13 12 45 45 H 1.09000 * 110.45875 * 94.76152 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 3.5699 -0.6755 -0.0015 6 6 4.7938 -1.5547 -0.0018 7 7 5.1912 -1.8413 1.3830 8 6 4.1761 -2.6559 2.0641 9 6 6.5069 -2.4932 1.4289 10 1 6.4963 -3.4295 0.8709 11 6 6.9624 -2.7239 2.8940 12 6 8.5022 -2.7391 2.7779 13 7 8.8541 -2.0240 1.5424 14 6 10.1031 -1.8357 1.0725 15 8 10.2764 -1.2271 0.0378 16 6 11.2844 -2.3817 1.8323 17 16 12.8111 -1.9687 0.9521 18 6 13.9944 -2.7064 2.0294 19 1 13.6667 -3.2179 2.9223 20 6 15.3477 -2.6302 1.7303 21 7 15.7471 -2.0064 0.6422 22 14 16.6021 -3.4129 2.8718 23 1 16.8428 -4.8175 2.4543 24 1 17.8753 -2.6514 2.8049 25 1 16.0854 -3.3918 4.2639 26 6 7.6144 -1.5461 0.9034 27 8 2.2874 -1.0889 -0.0064 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 4.4156 1.3164 -0.0003 32 1 5.6082 -1.0434 -0.5152 33 1 4.5698 -2.4891 -0.5165 34 1 4.4613 -2.7944 3.1070 35 1 3.2118 -2.1501 2.0153 36 1 4.1020 -3.6274 1.5755 37 1 6.6319 -1.9059 3.5341 38 1 6.5935 -3.6796 3.2665 39 1 8.8597 -3.7675 2.7255 40 1 8.9459 -2.2358 3.6368 41 1 11.3094 -1.9427 2.8296 42 1 11.1945 -3.4649 1.9144 43 1 16.6927 -1.9534 0.4329 44 1 7.6938 -1.6203 -0.1812 45 1 7.4057 -0.5178 1.1984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188965524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -24.934589 kcal Electronic energy + Delta-G solvation = -26280.234210 eV Core-core repulsion = 22424.996051 eV Total energy + Delta-G solvation = -3855.238160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.34068 -41.18405 -39.37275 -37.10337 -35.77644 -34.58783 -33.50670 -32.27075 -31.06194 -29.92576 -29.44769 -27.66961 -26.88969 -25.10817 -24.05192 -23.08532 -21.95554 -21.28885 -20.70215 -19.59014 -18.22700 -18.05344 -17.88955 -17.60818 -16.88406 -16.71098 -16.35947 -16.03890 -15.90767 -15.55687 -15.37562 -14.78738 -14.72870 -14.46963 -14.37805 -13.97326 -13.86701 -13.80245 -13.76112 -13.33362 -13.27857 -13.17305 -13.15257 -12.88901 -12.74471 -12.60326 -12.42788 -12.26878 -11.98843 -11.90277 -11.73029 -11.56026 -11.14214 -11.00168 -10.28616 -9.79021 -9.72050 -9.47783 -8.68251 -8.34666 -6.13495 0.38857 1.23005 1.42932 1.44432 1.54331 1.55754 1.61040 1.68160 2.03421 2.27224 2.85738 2.99564 3.15927 3.19325 3.37609 3.60294 3.69010 3.86520 3.98645 4.03917 4.10876 4.19628 4.23945 4.31885 4.36535 4.44712 4.48143 4.56967 4.63142 4.64038 4.68807 4.69617 4.78382 4.85298 4.93711 4.97590 5.00035 5.06345 5.15132 5.29697 5.39390 5.41670 5.78320 5.89929 6.19692 6.35665 6.72536 7.06407 7.08876 8.74623 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.001828 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.575867 B =15313.646332 C =15907.840181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.187 3.813 3 N -0.521 5.521 4 C -0.036 4.036 5 C -0.043 4.043 6 C 0.139 3.861 7 N -0.532 5.532 8 C 0.026 3.974 9 C 0.081 3.919 10 H 0.071 0.929 11 C -0.108 4.108 12 C 0.092 3.908 13 N -0.616 5.616 14 C 0.547 3.453 15 O -0.567 6.567 16 C -0.119 4.119 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.111 3.889 27 O -0.209 6.209 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.190 0.810 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.093 0.907 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.064 0.936 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.673 -3.888 5.567 33.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.020 4.020 3 N -0.251 5.251 4 C -0.175 4.175 5 C -0.096 4.096 6 C 0.012 3.988 7 N -0.257 5.257 8 C -0.121 4.121 9 C -0.028 4.028 10 H 0.089 0.911 11 C -0.146 4.146 12 C -0.030 4.030 13 N -0.352 5.352 14 C 0.335 3.665 15 O -0.445 6.445 16 C -0.270 4.270 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.012 4.012 27 O -0.097 6.097 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.207 0.793 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -32.433 -1.924 4.172 32.757 hybrid contribution 1.204 -1.983 0.841 2.468 sum -31.229 -3.907 5.013 31.869 Atomic orbital electron populations 1.20531 0.78304 1.06454 1.06080 1.27252 0.97934 0.78138 0.98634 1.70482 1.02858 1.31553 1.20201 1.23296 0.95161 0.93715 1.05300 1.23273 0.83419 0.95249 1.07654 1.20533 0.90088 0.97496 0.90717 1.61954 1.02232 1.47053 1.14508 1.22435 0.94245 0.95241 1.00205 1.22690 0.86930 0.94995 0.98162 0.91088 1.22719 0.91816 1.05009 0.95021 1.22379 0.97014 0.97630 0.85985 1.48324 1.04347 1.56324 1.26162 1.19766 0.83219 0.78983 0.84489 1.90692 1.85229 1.42857 1.25762 1.23296 0.95652 1.04975 1.03124 1.85601 0.96553 1.74802 1.35513 1.23198 0.93588 1.41339 1.11270 0.89825 1.26136 1.00047 0.95492 0.97439 1.70184 1.16912 1.41498 1.26178 0.84940 0.76551 0.78096 0.78309 1.19246 1.20339 1.18128 1.22249 0.82447 0.98758 0.97731 1.84387 1.16878 1.38181 1.70261 0.87372 0.87403 0.87314 0.79344 0.86929 0.91669 0.89204 0.92370 0.94273 0.88844 0.87104 0.89916 0.90123 0.87529 0.87357 0.91982 0.91702 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.24 0.75 0.38 16 2 C 0.19 3.15 8.34 88.34 0.74 3.89 16 3 N -0.52 -11.49 11.29 -303.83 -3.43 -14.92 16 4 C -0.04 -0.75 11.80 83.39 0.98 0.24 16 5 C -0.04 -0.78 5.94 24.79 0.15 -0.63 16 6 C 0.14 2.05 5.41 85.56 0.46 2.51 16 7 N -0.53 -7.46 4.65 -893.45 -4.16 -11.61 16 8 C 0.03 0.29 9.16 127.69 1.17 1.46 16 9 C 0.08 1.17 2.71 46.31 0.13 1.30 16 10 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 11 C -0.11 -1.24 5.24 31.82 0.17 -1.08 16 12 C 0.09 1.62 6.49 86.76 0.56 2.18 16 13 N -0.62 -16.65 3.33 -811.59 -2.70 -19.35 16 14 C 0.55 21.05 7.87 87.66 0.69 21.74 16 15 O -0.57 -27.15 16.12 -3.05 -0.05 -27.20 16 16 C -0.12 -4.83 5.35 71.23 0.38 -4.45 16 17 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 18 C -0.55 -31.21 9.50 67.95 0.65 -30.57 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.77 5.49 84.86 0.47 1.24 16 21 N -0.91 -56.11 13.22 21.65 0.29 -55.82 16 22 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 23 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 C 0.11 2.47 5.47 86.85 0.47 2.95 16 27 O -0.21 -3.76 10.10 -3.70 -0.04 -3.80 16 28 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.11 1.64 6.80 -2.39 -0.02 1.63 16 33 H 0.07 0.85 8.12 -2.38 -0.02 0.83 16 34 H 0.09 0.76 7.11 -2.39 -0.02 0.74 16 35 H 0.06 0.79 6.64 -2.39 -0.02 0.77 16 36 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.11 0.73 8.09 -2.39 -0.02 0.71 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 42 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 43 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 44 H 0.06 1.61 7.69 -2.38 -0.02 1.59 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -82.14 387.60 -0.48 -82.62 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.98 Total: 13.15 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 7.76 Total: 1.17 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -10.00 Total: -101.70 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.09 Total: -31.00 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.14 -0.48 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188965524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.681 kcal (2) G-P(sol) polarization free energy of solvation -82.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds