Wall clock time and date at job start Sat Apr 11 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.46887 * 2 1 4 4 N 1.30947 * 122.90022 * 269.99176 * 3 2 1 5 5 C 1.29435 * 117.36035 * 180.02562 * 4 3 2 6 6 S 1.70953 * 110.39091 * 359.72794 * 5 4 3 7 7 C 1.35663 * 122.90530 * 89.99962 * 3 2 1 8 8 C 1.46674 * 126.13054 * 359.97438 * 7 3 2 9 9 O 1.21682 * 120.00206 * 351.68346 * 8 7 3 10 10 N 1.34782 * 119.99759 * 171.68988 * 8 7 3 11 11 C 1.47514 * 118.75558 * 173.70740 * 10 8 7 12 12 C 1.53564 * 111.02715 * 221.60566 * 11 10 8 13 13 C 1.51543 * 109.58475 * 39.97673 * 12 11 10 14 14 O 1.42149 * 108.75034 * 268.60486 * 13 12 11 15 15 C 1.38016 * 119.44856 * 87.22982 * 14 13 12 16 16 H 1.08993 * 109.46744 * 56.56632 * 15 14 13 17 17 C 1.52995 * 109.47214 * 176.56829 * 15 14 13 18 18 N 1.46499 * 109.46973 * 300.00455 * 17 15 14 19 19 C 1.36940 * 120.00100 * 179.72295 * 18 17 15 20 20 H 1.08006 * 119.99949 * 0.27979 * 19 18 17 21 21 C 1.38811 * 120.00203 * 180.27624 * 19 18 17 22 22 N 1.31624 * 120.00131 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99964 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46751 * 90.00012 * 23 21 19 25 25 H 1.48499 * 109.47169 * 209.99880 * 23 21 19 26 26 H 1.48499 * 109.47069 * 330.00609 * 23 21 19 27 27 C 1.45118 * 118.75781 * 353.67814 * 10 8 7 28 28 H 1.09004 * 109.47279 * 60.00371 * 1 2 3 29 29 H 1.08999 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47424 * 300.00256 * 1 2 3 31 31 H 1.08996 * 109.47424 * 239.99744 * 2 1 3 32 32 H 1.08996 * 109.47208 * 119.99268 * 2 1 3 33 33 H 1.08004 * 124.80020 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.16427 * 341.99954 * 11 10 8 35 35 H 1.08993 * 109.17047 * 101.20505 * 11 10 8 36 36 H 1.09005 * 109.45632 * 160.00665 * 12 11 10 37 37 H 1.08997 * 109.45332 * 279.94074 * 12 11 10 38 38 H 1.09005 * 109.58687 * 28.37571 * 13 12 11 39 39 H 1.08996 * 109.59302 * 148.81741 * 13 12 11 40 40 H 1.09003 * 109.47650 * 180.02562 * 17 15 14 41 41 H 1.09006 * 109.47605 * 60.00135 * 17 15 14 42 42 H 0.97000 * 120.00148 * 0.02562 * 18 17 15 43 43 H 0.96997 * 119.99721 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.46316 * 330.72282 * 27 10 8 45 45 H 1.08997 * 109.44554 * 210.75736 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2694 2.0914 -1.0995 5 6 2.6993 3.3059 -0.9745 6 16 2.8385 3.7214 0.6779 7 6 2.2779 2.1157 1.1390 8 6 2.1024 1.6211 2.5086 9 8 1.5612 0.5489 2.7037 10 7 2.5407 2.3544 3.5512 11 6 2.2268 1.9011 4.9194 12 6 1.8263 3.0837 5.8134 13 6 0.9558 4.0430 5.0270 14 8 1.7881 5.0226 4.4201 15 6 2.3429 4.7689 3.1821 16 1 1.5507 4.5435 2.4683 17 6 3.1202 5.9991 2.7098 18 7 2.2108 7.1435 2.6122 19 6 2.6861 8.3637 2.2116 20 1 3.7307 8.4812 1.9633 21 6 1.8256 9.4494 2.1246 22 7 2.2824 10.6220 1.7391 23 14 0.0189 9.2458 2.5533 24 1 -0.1807 9.5199 3.9992 25 1 -0.7904 10.1992 1.7525 26 1 -0.4085 7.8565 2.2493 27 6 3.3040 3.5596 3.2853 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 2.9329 3.9648 -1.7977 34 1 1.4037 1.1875 4.8800 35 1 3.1032 1.4120 5.3443 36 1 1.2720 2.7150 6.6765 37 1 2.7230 3.6022 6.1528 38 1 0.4134 3.4959 4.2558 39 1 0.2487 4.5295 5.6988 40 1 3.5580 5.7990 1.7318 41 1 3.9125 6.2246 3.4237 42 1 1.2727 7.0380 2.8355 43 1 1.6811 11.3807 1.6787 44 1 3.8467 3.4461 2.3469 45 1 4.0124 3.7269 4.0966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200648207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:16 Heat of formation + Delta-G solvation = -1.160827 kcal Electronic energy + Delta-G solvation = -28872.405840 eV Core-core repulsion = 25018.198588 eV Total energy + Delta-G solvation = -3854.207252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95298 -40.00516 -38.49927 -35.65158 -35.15309 -33.61666 -33.29304 -31.40663 -29.96871 -29.27448 -27.07250 -26.18817 -25.24247 -23.36562 -22.81186 -22.04460 -21.29640 -20.54806 -18.80419 -18.62135 -17.79786 -17.12620 -16.73420 -16.71199 -16.00415 -15.31408 -15.25308 -14.76580 -14.67157 -14.44293 -14.32305 -13.85183 -13.75770 -13.72098 -13.32254 -12.99796 -12.87980 -12.60353 -12.44302 -12.34713 -12.29228 -11.90723 -11.53180 -11.38160 -11.26124 -10.98976 -10.94172 -10.84690 -10.61940 -10.20831 -10.15457 -9.74105 -9.63440 -9.51781 -9.43386 -8.96340 -8.92956 -8.69499 -7.28193 -5.80934 -3.16514 0.16766 1.19458 1.58264 2.33193 2.63853 2.98904 3.36494 3.41144 3.44480 3.64156 4.04787 4.25418 4.49713 4.57178 4.62901 4.67174 4.85929 4.88801 4.94999 5.01446 5.06545 5.23473 5.29950 5.36281 5.39119 5.46380 5.48762 5.49223 5.52763 5.60310 5.74353 5.80705 5.86240 5.90799 5.92753 6.11499 6.15833 6.25520 6.28469 6.47189 6.97407 7.56847 7.65058 7.83647 7.93200 8.37589 9.16365 9.88767 10.08313 11.37034 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.004521 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.062130 B = 6191.318245 C = 7480.258197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C 0.152 3.848 4 N -0.483 5.483 5 C 0.001 3.999 6 S 0.236 5.764 7 C -0.329 4.329 8 C 0.596 3.404 9 O -0.524 6.524 10 N -0.606 5.606 11 C 0.116 3.884 12 C -0.166 4.166 13 C 0.070 3.930 14 O -0.364 6.364 15 C 0.074 3.926 16 H 0.056 0.944 17 C 0.172 3.828 18 N -0.746 5.746 19 C -0.246 4.246 20 H 0.092 0.908 21 C 0.009 3.991 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.057 3.943 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.201 0.799 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.093 0.907 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.366 0.634 43 H 0.260 0.740 44 H 0.093 0.907 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -20.788 2.595 20.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.095 4.095 3 C 0.012 3.988 4 N -0.197 5.197 5 C -0.293 4.293 6 S 0.495 5.505 7 C -0.452 4.452 8 C 0.384 3.616 9 O -0.403 6.403 10 N -0.339 5.339 11 C -0.006 4.006 12 C -0.205 4.205 13 C -0.007 4.007 14 O -0.282 6.282 15 C 0.013 3.987 16 H 0.074 0.926 17 C 0.044 3.956 18 N -0.391 5.391 19 C -0.376 4.376 20 H 0.109 0.891 21 C -0.187 4.187 22 N -0.579 5.579 23 Si 0.713 3.287 24 H -0.209 1.209 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.069 4.069 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.218 0.782 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.199 0.801 43 H 0.070 0.930 44 H 0.110 0.890 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.922 -20.231 2.656 20.425 hybrid contribution -1.513 -0.840 -0.021 1.730 sum -0.591 -21.070 2.635 21.243 Atomic orbital electron populations 1.21585 0.93894 1.01917 1.01955 1.20325 0.96727 0.88612 1.03847 1.20680 0.94747 0.97979 0.85352 1.66257 1.15443 1.06598 1.31388 1.29305 0.99317 0.95996 1.04650 1.85614 1.56927 1.08907 0.99094 1.25664 1.20491 1.00346 0.98735 1.16882 0.78077 0.83912 0.82732 1.90763 1.43799 1.20865 1.84839 1.47698 1.54556 1.25217 1.06390 1.21846 1.01943 0.96883 0.79910 1.22512 1.02224 0.96792 0.98928 1.22214 0.92240 0.90215 0.96034 1.86439 1.64912 1.43538 1.33341 1.22616 0.95035 0.95167 0.85874 0.92617 1.20666 0.92790 0.84813 0.97363 1.42528 1.07232 1.06768 1.82602 1.19020 0.96205 0.84722 1.37656 0.89065 1.24628 0.97520 0.95364 1.01197 1.69698 1.34663 1.00189 1.53396 0.86573 0.86763 0.77020 0.78316 1.20915 1.21786 1.20402 1.22998 0.95679 0.84794 1.03403 0.92878 0.92023 0.92346 0.90521 0.88482 0.78204 0.88924 0.91300 0.89361 0.89795 0.93280 0.88900 0.94074 0.93992 0.80099 0.92998 0.89005 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.83 37.16 0.37 -1.18 16 2 C -0.06 -0.67 5.67 -27.88 -0.16 -0.83 16 3 C 0.15 2.08 6.04 -83.89 -0.51 1.57 16 4 N -0.48 -6.64 10.50 -11.53 -0.12 -6.76 16 5 C 0.00 0.01 12.22 51.75 0.63 0.64 16 6 S 0.24 2.92 13.65 -107.50 -1.47 1.45 16 7 C -0.33 -4.44 6.14 -37.10 -0.23 -4.67 16 8 C 0.60 8.13 7.55 -12.85 -0.10 8.03 16 9 O -0.52 -7.86 13.40 5.21 0.07 -7.79 16 10 N -0.61 -7.19 2.19 -174.02 -0.38 -7.57 16 11 C 0.12 1.14 6.11 -3.19 -0.02 1.12 16 12 C -0.17 -1.53 5.78 -27.18 -0.16 -1.68 16 13 C 0.07 0.83 6.38 36.42 0.23 1.06 16 14 O -0.36 -5.60 9.18 -26.54 -0.24 -5.84 16 15 C 0.07 1.09 1.69 -25.78 -0.04 1.05 16 16 H 0.06 0.88 6.48 -50.26 -0.33 0.55 16 17 C 0.17 3.02 5.67 -4.04 -0.02 2.99 16 18 N -0.75 -16.97 5.29 -59.91 -0.32 -17.29 16 19 C -0.25 -6.69 10.47 -15.06 -0.16 -6.84 16 20 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 21 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -28.57 13.97 55.49 0.78 -27.80 16 23 Si 0.88 21.92 27.73 -169.99 -4.71 17.20 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 27 C 0.06 0.67 4.38 -3.83 -0.02 0.66 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 1.22 6.23 -51.93 -0.32 0.90 16 33 H 0.20 1.83 8.06 -52.48 -0.42 1.41 16 34 H 0.09 0.96 7.08 -51.93 -0.37 0.59 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.05 0.62 7.40 -51.93 -0.38 0.23 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.68 6.16 -51.93 -0.32 0.36 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.37 8.44 5.39 -40.82 -0.22 8.22 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.09 1.03 4.48 -23.36 -0.10 0.93 16 45 H 0.10 1.09 8.11 -51.93 -0.42 0.67 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.99 358.69 -7.53 -40.52 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.26 Total: 6.38 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.27 Total: 2.08 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.04 Total: -59.42 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.17 Total: -13.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.47 Total: 1.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.99 -7.53 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200648207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.362 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds