Wall clock time and date at job start Sat Apr 11 2020 05:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29021 * 124.91778 * 2 1 4 4 C 1.31779 * 117.12785 * 180.22970 * 3 2 1 5 5 C 1.50695 * 122.75481 * 179.75412 * 4 3 2 6 6 C 1.50699 * 109.46995 * 304.70598 * 5 4 3 7 7 O 1.21286 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00182 * 179.97438 * 6 5 4 9 9 C 1.47505 * 118.75698 * 0.02562 * 8 6 5 10 10 C 1.53577 * 111.03075 * 138.39089 * 9 8 6 11 11 C 1.51540 * 109.57612 * 320.02286 * 10 9 8 12 12 O 1.42155 * 108.76309 * 91.40103 * 11 10 9 13 13 C 1.38015 * 119.43680 * 272.77538 * 12 11 10 14 14 H 1.08990 * 109.46790 * 303.41890 * 13 12 11 15 15 C 1.52998 * 109.46784 * 183.42477 * 13 12 11 16 16 N 1.46498 * 109.47232 * 64.98761 * 15 13 12 17 17 C 1.36933 * 120.00301 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00183 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47104 * 89.99596 * 21 19 17 23 23 H 1.48496 * 109.47111 * 210.00081 * 21 19 17 24 24 H 1.48503 * 109.46560 * 330.00068 * 21 19 17 25 25 C 1.45124 * 118.75929 * 180.02562 * 8 6 5 26 26 C 1.33644 * 114.49941 * 359.48474 * 4 3 2 27 27 S 1.70971 * 124.91484 * 179.70060 * 2 1 3 28 28 H 1.08995 * 109.46894 * 180.27961 * 1 2 3 29 29 H 1.09004 * 109.46714 * 300.27908 * 1 2 3 30 30 H 1.09000 * 109.47148 * 60.27477 * 1 2 3 31 31 H 1.09007 * 109.47561 * 184.71139 * 5 4 3 32 32 H 1.09000 * 109.47190 * 64.71191 * 5 4 3 33 33 H 1.09002 * 109.16936 * 17.99494 * 9 8 6 34 34 H 1.08997 * 109.16863 * 258.78519 * 9 8 6 35 35 H 1.08999 * 109.45031 * 80.04793 * 10 9 8 36 36 H 1.08998 * 109.45724 * 199.98976 * 10 9 8 37 37 H 1.09001 * 109.58713 * 211.18501 * 11 10 9 38 38 H 1.09005 * 109.59084 * 331.61327 * 11 10 9 39 39 H 1.08992 * 109.47387 * 184.99402 * 15 13 12 40 40 H 1.09006 * 109.46804 * 304.99326 * 15 13 12 41 41 H 0.97005 * 120.00184 * 0.02562 * 16 15 13 42 42 H 0.96997 * 119.99689 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.46186 * 29.29242 * 25 8 6 44 44 H 1.09004 * 109.45824 * 149.26387 * 25 8 6 45 45 H 1.07995 * 126.04359 * 180.26796 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0107 6 6 4.2380 2.9297 -1.1794 7 8 3.3236 2.6708 -1.9330 8 7 4.9917 4.0277 -1.3867 9 6 6.0964 4.3168 -0.4530 10 6 7.3449 4.7961 -1.2080 11 6 7.5106 3.9886 -2.4795 12 8 6.8396 4.6595 -3.5380 13 6 5.4981 4.4162 -3.7527 14 1 5.3429 3.3488 -3.9087 15 6 5.0321 5.1856 -4.9904 16 7 5.7156 4.6632 -6.1761 17 6 5.4559 5.2006 -7.4085 18 1 4.7474 6.0100 -7.5063 19 6 6.1031 4.7053 -8.5322 20 7 6.9669 3.7193 -8.4130 21 14 5.7494 5.4390 -10.2133 22 1 6.6887 6.5597 -10.4719 23 1 5.9245 4.3958 -11.2555 24 1 4.3536 5.9449 -10.2487 25 6 4.6856 4.8809 -2.5201 26 6 3.9355 -0.4006 0.0020 27 16 2.4856 -1.4020 0.0073 28 1 -0.3633 -1.0276 0.0050 29 1 -0.3633 0.5182 0.8875 30 1 -0.3633 0.5096 -0.8924 31 1 5.5450 1.6347 -0.0983 32 1 4.4370 2.5877 0.9177 33 1 6.3404 3.4121 0.1039 34 1 5.7811 5.0919 0.2454 35 1 7.2342 5.8508 -1.4597 36 1 8.2238 4.6640 -0.5770 37 1 8.5701 3.8967 -2.7186 38 1 7.0776 2.9977 -2.3422 39 1 3.9553 5.0651 -5.1090 40 1 5.2684 6.2430 -4.8711 41 1 6.3516 3.9360 -6.0884 42 1 7.4188 3.3730 -9.1983 43 1 3.6206 4.8197 -2.7435 44 1 4.9477 5.9114 -2.2801 45 1 4.9546 -0.7582 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202005720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:20 Heat of formation + Delta-G solvation = -10.770897 kcal Electronic energy + Delta-G solvation = -27521.839431 eV Core-core repulsion = 23667.215455 eV Total energy + Delta-G solvation = -3854.623976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.79356 -39.82946 -38.24676 -35.59093 -34.54509 -33.41241 -32.77257 -30.88533 -30.37204 -28.68429 -27.88465 -26.56659 -25.02636 -23.36566 -22.44205 -21.67788 -20.91027 -19.97628 -19.25247 -17.83777 -17.34235 -17.07647 -16.47282 -16.34596 -15.84140 -15.38989 -15.25501 -14.75466 -14.53500 -14.18190 -13.99946 -13.87463 -13.60466 -13.33147 -13.09259 -13.02308 -12.81192 -12.56601 -12.46283 -12.39865 -12.16417 -11.94644 -11.66088 -11.53437 -11.32296 -10.93908 -10.76313 -10.74872 -10.22120 -9.99943 -9.80656 -9.72332 -9.62432 -9.52428 -9.35652 -8.89989 -8.78956 -8.49118 -6.80408 -5.65581 -2.93528 0.52318 1.17387 1.51380 2.51397 2.64702 2.99610 3.50706 3.55011 3.57292 3.80264 3.99639 4.39316 4.55747 4.60875 4.67360 4.72840 4.81411 4.95427 4.98665 5.02736 5.08611 5.22755 5.29028 5.35916 5.38375 5.45520 5.47322 5.53149 5.60342 5.65790 5.68041 5.87292 5.93917 6.00193 6.05166 6.14463 6.38367 6.56560 6.72075 6.83955 7.25932 7.61935 7.78442 8.04986 8.19429 8.52779 9.64137 10.22783 10.58756 11.57482 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.002757 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.967047 B =10153.765064 C =11482.789095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.449 5.449 4 C 0.090 3.910 5 C -0.066 4.066 6 C 0.511 3.489 7 O -0.511 6.511 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.167 4.167 11 C 0.074 3.926 12 O -0.369 6.369 13 C 0.089 3.911 14 H 0.051 0.949 15 C 0.166 3.834 16 N -0.726 5.726 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.083 3.917 26 C -0.259 4.259 27 S 0.110 5.890 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.027 0.973 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 -7.513 26.851 28.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.226 4.226 3 N -0.163 5.163 4 C -0.043 4.043 5 C -0.108 4.108 6 C 0.297 3.703 7 O -0.385 6.385 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.205 4.205 11 C -0.003 4.003 12 O -0.287 6.287 13 C 0.029 3.971 14 H 0.069 0.931 15 C 0.038 3.962 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.739 3.261 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.040 4.040 26 C -0.398 4.398 27 S 0.365 5.635 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.045 0.955 41 H 0.220 0.780 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.877 -7.996 26.214 28.029 hybrid contribution 0.772 0.651 -0.669 1.212 sum -5.105 -7.344 25.545 27.066 Atomic orbital electron populations 1.20427 0.85178 1.03353 1.04631 1.27041 1.01816 0.90596 1.03109 1.65946 1.04206 1.31302 1.14841 1.19539 0.90036 0.93000 1.01708 1.20298 0.97819 0.93583 0.99139 1.20353 0.82311 0.81369 0.86276 1.90770 1.29555 1.71450 1.46688 1.47918 1.32209 1.25754 1.28843 1.21996 0.86849 1.01425 0.91462 1.22519 0.97191 1.02596 0.98235 1.22104 0.97440 0.94469 0.86293 1.86433 1.23086 1.67648 1.51495 1.22258 0.81234 0.99506 0.94086 0.93136 1.20606 0.95174 0.95692 0.84732 1.42230 1.50646 1.42555 1.01591 1.19240 1.19506 1.13409 0.84539 0.91186 1.24735 0.99593 0.98952 0.97858 1.69682 1.31105 1.28755 1.28668 0.86177 0.77671 0.77993 0.84303 1.21786 1.21849 1.20776 1.22380 1.02001 0.93958 0.85685 1.26730 1.03295 0.95675 1.14121 1.83900 0.97816 1.13138 1.68657 0.90351 0.89480 0.89146 0.87365 0.87309 0.90103 0.91415 0.89905 0.89703 0.89333 0.93622 0.94804 0.95495 0.77982 0.93653 0.88904 0.89971 0.80571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.47 36.01 0.38 -0.21 16 2 C 0.05 0.59 7.39 -13.46 -0.10 0.49 16 3 N -0.45 -6.16 9.70 -8.06 -0.08 -6.24 16 4 C 0.09 1.09 5.63 -84.23 -0.47 0.61 16 5 C -0.07 -0.66 4.53 -29.04 -0.13 -0.79 16 6 C 0.51 7.20 7.60 -10.99 -0.08 7.12 16 7 O -0.51 -9.65 14.88 5.55 0.08 -9.56 16 8 N -0.61 -7.71 2.19 -172.49 -0.38 -8.09 16 9 C 0.11 0.89 6.00 -3.19 -0.02 0.87 16 10 C -0.17 -1.55 5.79 -27.17 -0.16 -1.71 16 11 C 0.07 0.97 6.37 36.42 0.23 1.20 16 12 O -0.37 -6.69 9.38 -26.54 -0.25 -6.94 16 13 C 0.09 1.66 2.68 -25.80 -0.07 1.59 16 14 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 15 C 0.17 3.68 5.92 -4.04 -0.02 3.65 16 16 N -0.73 -19.98 5.54 -59.91 -0.33 -20.31 16 17 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 18 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 19 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 20 N -0.93 -29.57 13.06 55.49 0.72 -28.84 16 21 Si 0.91 23.32 29.55 -169.99 -5.02 18.30 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.08 1.25 4.86 -3.85 -0.02 1.23 16 26 C -0.26 -2.61 11.07 29.12 0.32 -2.28 16 27 S 0.11 1.03 23.17 -107.50 -2.49 -1.46 16 28 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 0.76 7.30 -51.93 -0.38 0.38 16 32 H 0.11 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.08 0.48 5.88 -51.93 -0.31 0.17 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 0.60 7.40 -51.93 -0.38 0.21 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.39 11.30 7.65 -40.82 -0.31 10.98 16 42 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.09 1.52 7.27 -51.93 -0.38 1.15 16 44 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 45 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -38.14 379.71 -9.20 -47.34 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.79 Total: 6.01 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.39 Total: 4.07 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: -0.06 Total: -63.48 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.17 Total: -16.50 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.14 -9.20 -47.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202005720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.571 kcal (2) G-P(sol) polarization free energy of solvation -38.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds