Wall clock time and date at job start Sat Apr 11 2020 05:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29021 * 124.91778 * 2 1 4 4 C 1.31779 * 117.12785 * 180.22970 * 3 2 1 5 5 C 1.50695 * 122.75481 * 179.75412 * 4 3 2 6 6 C 1.50699 * 109.46995 * 304.70598 * 5 4 3 7 7 O 1.21286 * 120.00132 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00182 * 179.97438 * 6 5 4 9 9 C 1.47505 * 118.75698 * 0.02562 * 8 6 5 10 10 C 1.53577 * 111.03075 * 138.39089 * 9 8 6 11 11 C 1.51540 * 109.57612 * 320.02286 * 10 9 8 12 12 O 1.42155 * 108.76309 * 91.40103 * 11 10 9 13 13 C 1.38015 * 119.43680 * 272.77538 * 12 11 10 14 14 H 1.08990 * 109.46790 * 303.41890 * 13 12 11 15 15 C 1.52998 * 109.46784 * 183.42477 * 13 12 11 16 16 N 1.46498 * 109.47232 * 64.98761 * 15 13 12 17 17 C 1.36933 * 120.00301 * 179.97438 * 16 15 13 18 18 H 1.08007 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00278 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00180 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00183 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47104 * 89.99596 * 21 19 17 23 23 H 1.48496 * 109.47111 * 210.00081 * 21 19 17 24 24 H 1.48503 * 109.46560 * 330.00068 * 21 19 17 25 25 C 1.45124 * 118.75929 * 180.02562 * 8 6 5 26 26 C 1.33644 * 114.49941 * 359.48474 * 4 3 2 27 27 S 1.70971 * 124.91484 * 179.70060 * 2 1 3 28 28 H 1.08995 * 109.46894 * 180.27961 * 1 2 3 29 29 H 1.09004 * 109.46714 * 300.27908 * 1 2 3 30 30 H 1.09000 * 109.47148 * 60.27477 * 1 2 3 31 31 H 1.09007 * 109.47561 * 184.71139 * 5 4 3 32 32 H 1.09000 * 109.47190 * 64.71191 * 5 4 3 33 33 H 1.09002 * 109.16936 * 17.99494 * 9 8 6 34 34 H 1.08997 * 109.16863 * 258.78519 * 9 8 6 35 35 H 1.08999 * 109.45031 * 80.04793 * 10 9 8 36 36 H 1.08998 * 109.45724 * 199.98976 * 10 9 8 37 37 H 1.09001 * 109.58713 * 211.18501 * 11 10 9 38 38 H 1.09005 * 109.59084 * 331.61327 * 11 10 9 39 39 H 1.08992 * 109.47387 * 184.99402 * 15 13 12 40 40 H 1.09006 * 109.46804 * 304.99326 * 15 13 12 41 41 H 0.97005 * 120.00184 * 0.02562 * 16 15 13 42 42 H 0.96997 * 119.99689 * 179.97438 * 20 19 17 43 43 H 1.08994 * 109.46186 * 29.29242 * 25 8 6 44 44 H 1.09004 * 109.45824 * 149.26387 * 25 8 6 45 45 H 1.07995 * 126.04359 * 180.26796 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0107 6 6 4.2380 2.9297 -1.1794 7 8 3.3236 2.6708 -1.9330 8 7 4.9917 4.0277 -1.3867 9 6 6.0964 4.3168 -0.4530 10 6 7.3449 4.7961 -1.2080 11 6 7.5106 3.9886 -2.4795 12 8 6.8396 4.6595 -3.5380 13 6 5.4981 4.4162 -3.7527 14 1 5.3429 3.3488 -3.9087 15 6 5.0321 5.1856 -4.9904 16 7 5.7156 4.6632 -6.1761 17 6 5.4559 5.2006 -7.4085 18 1 4.7474 6.0100 -7.5063 19 6 6.1031 4.7053 -8.5322 20 7 6.9669 3.7193 -8.4130 21 14 5.7494 5.4390 -10.2133 22 1 6.6887 6.5597 -10.4719 23 1 5.9245 4.3958 -11.2555 24 1 4.3536 5.9449 -10.2487 25 6 4.6856 4.8809 -2.5201 26 6 3.9355 -0.4006 0.0020 27 16 2.4856 -1.4020 0.0073 28 1 -0.3633 -1.0276 0.0050 29 1 -0.3633 0.5182 0.8875 30 1 -0.3633 0.5096 -0.8924 31 1 5.5450 1.6347 -0.0983 32 1 4.4370 2.5877 0.9177 33 1 6.3404 3.4121 0.1039 34 1 5.7811 5.0919 0.2454 35 1 7.2342 5.8508 -1.4597 36 1 8.2238 4.6640 -0.5770 37 1 8.5701 3.8967 -2.7186 38 1 7.0776 2.9977 -2.3422 39 1 3.9553 5.0651 -5.1090 40 1 5.2684 6.2430 -4.8711 41 1 6.3516 3.9360 -6.0884 42 1 7.4188 3.3730 -9.1983 43 1 3.6206 4.8197 -2.7435 44 1 4.9477 5.9114 -2.2801 45 1 4.9546 -0.7582 0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202005720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:19 Heat of formation + Delta-G solvation = -38.349255 kcal Electronic energy + Delta-G solvation = -27523.035318 eV Core-core repulsion = 23667.215455 eV Total energy + Delta-G solvation = -3855.819863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80407 -40.76270 -39.44805 -36.90679 -36.22787 -34.44382 -34.00920 -32.66903 -31.30295 -29.90469 -28.86781 -27.61499 -26.59703 -24.75955 -23.73008 -22.80128 -22.30065 -20.79175 -20.17759 -19.28556 -18.73099 -18.22282 -17.73365 -17.53348 -16.95101 -16.55025 -16.33011 -16.04973 -15.80167 -15.40472 -15.16779 -14.90290 -14.79481 -14.63555 -14.44802 -14.08919 -13.95792 -13.68029 -13.57206 -13.26697 -13.11938 -13.08977 -12.96888 -12.77792 -12.61166 -12.38951 -12.26454 -12.12354 -11.99569 -11.83564 -11.47371 -11.00148 -10.88661 -10.55897 -10.53901 -10.30521 -9.67257 -9.60294 -9.04169 -7.96123 -5.26393 -0.23786 0.45704 0.75690 1.44948 1.48609 1.56879 1.59344 1.69319 2.08798 2.54830 2.72292 3.10826 3.37110 3.55941 3.63403 3.83691 3.88220 4.00482 4.07897 4.09713 4.16793 4.29854 4.32931 4.37212 4.42662 4.47398 4.49333 4.53526 4.63322 4.69212 4.74321 4.76877 4.86460 4.88766 4.98618 5.07447 5.14247 5.21707 5.22749 5.44794 5.54750 6.24261 6.29816 6.75023 6.85752 7.17737 7.30300 8.03668 8.29619 9.27855 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012108 B = 0.002757 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.967047 B =10153.765064 C =11482.789095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.030 3.970 3 N -0.490 5.490 4 C 0.060 3.940 5 C -0.058 4.058 6 C 0.503 3.497 7 O -0.571 6.571 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.156 4.156 11 C 0.063 3.937 12 O -0.398 6.398 13 C 0.109 3.891 14 H 0.016 0.984 15 C 0.163 3.837 16 N -0.740 5.740 17 C -0.250 4.250 18 H 0.077 0.923 19 C -0.078 4.078 20 N -0.971 5.971 21 Si 0.981 3.019 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.269 1.269 25 C 0.097 3.903 26 C -0.262 4.262 27 S 0.143 5.857 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -7.373 29.047 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.248 4.248 3 N -0.205 5.205 4 C -0.073 4.073 5 C -0.099 4.099 6 C 0.292 3.708 7 O -0.449 6.449 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.194 4.194 11 C -0.013 4.013 12 O -0.317 6.317 13 C 0.048 3.952 14 H 0.034 0.966 15 C 0.035 3.965 16 N -0.383 5.383 17 C -0.381 4.381 18 H 0.095 0.905 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.809 3.191 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.193 1.193 25 C -0.028 4.028 26 C -0.401 4.401 27 S 0.398 5.602 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.134 0.866 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.204 0.796 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.046 -7.825 28.477 29.960 hybrid contribution 0.555 0.560 -1.300 1.520 sum -4.491 -7.265 27.177 28.487 Atomic orbital electron populations 1.20540 0.83626 1.04930 1.04472 1.27561 1.03186 0.91132 1.02962 1.65976 1.05422 1.32930 1.16220 1.19929 0.90057 0.94384 1.02895 1.20414 0.98989 0.92553 0.97989 1.21186 0.81362 0.81593 0.86694 1.90742 1.32239 1.72887 1.49037 1.48044 1.33085 1.24905 1.28301 1.22392 0.84941 1.04072 0.90777 1.22439 0.99289 1.01016 0.96658 1.22439 0.97081 0.94877 0.86907 1.86352 1.22682 1.68560 1.54103 1.21809 0.82497 0.96677 0.94199 0.96624 1.20740 0.94590 0.96276 0.84846 1.42428 1.50767 1.42342 1.02737 1.19686 1.19334 1.13416 0.85683 0.90484 1.25671 0.99718 0.99651 1.01957 1.69857 1.32369 1.30337 1.29582 0.85039 0.78109 0.77065 0.78924 1.20998 1.21959 1.19348 1.22016 1.00002 0.95280 0.85457 1.27144 1.04861 0.95313 1.12738 1.83699 0.97039 1.11819 1.67669 0.87933 0.88533 0.90305 0.83945 0.84602 0.86616 0.88898 0.90928 0.85810 0.88678 0.93825 0.95134 0.94863 0.79553 0.93949 0.90953 0.88023 0.77864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.47 71.24 0.75 -0.42 16 2 C 0.03 0.66 7.39 88.52 0.65 1.31 16 3 N -0.49 -13.49 9.70 -179.41 -1.74 -15.23 16 4 C 0.06 1.38 5.63 41.52 0.23 1.61 16 5 C -0.06 -1.01 4.53 29.10 0.13 -0.88 16 6 C 0.50 13.87 7.60 87.66 0.67 14.53 16 7 O -0.57 -22.42 14.88 -3.05 -0.05 -22.47 16 8 N -0.61 -14.50 2.19 -818.03 -1.79 -16.30 16 9 C 0.10 1.28 6.00 86.38 0.52 1.80 16 10 C -0.16 -2.37 5.79 30.31 0.18 -2.19 16 11 C 0.06 1.56 6.37 71.50 0.46 2.02 16 12 O -0.40 -14.60 9.38 -117.87 -1.11 -15.71 16 13 C 0.11 4.18 2.68 31.20 0.08 4.27 16 14 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 15 C 0.16 7.47 5.92 86.38 0.51 7.98 16 16 N -0.74 -42.24 5.54 -343.46 -1.90 -44.15 16 17 C -0.25 -15.10 9.99 84.03 0.84 -14.26 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 19 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 20 N -0.97 -62.97 13.06 21.65 0.28 -62.69 16 21 Si 0.98 48.47 29.55 68.60 2.03 50.50 16 22 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 C 0.10 2.94 4.86 87.24 0.42 3.37 16 26 C -0.26 -4.80 11.07 66.78 0.74 -4.06 16 27 S 0.14 2.49 23.17 -56.49 -1.31 1.18 16 28 H 0.10 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.14 1.42 7.30 -2.38 -0.02 1.40 16 32 H 0.14 1.60 8.04 -2.39 -0.02 1.58 16 33 H 0.12 0.74 5.88 -2.39 -0.01 0.72 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.31 8.01 -2.39 -0.02 1.29 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.04 1.09 7.40 -2.38 -0.02 1.08 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.03 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.37 22.84 7.65 -92.70 -0.71 22.13 16 42 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.07 2.49 7.27 -2.39 -0.02 2.47 16 44 H 0.10 2.65 8.11 -2.38 -0.02 2.63 16 45 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -87.84 379.71 1.36 -86.49 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.30 Total: 27.59 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.65 Total: 10.78 kcal Atomic # 7 Polarization: -133.21 SS G_CDS: -5.15 Total: -138.36 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.15 Total: -38.18 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 2.03 Total: 50.50 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.18 kcal Total: -87.84 1.36 -86.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202005720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.136 kcal (2) G-P(sol) polarization free energy of solvation -87.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds