Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32556 * 121.64486 * 2 1 4 4 S 1.77228 * 105.31924 * 180.02562 * 3 2 1 5 5 C 1.72211 * 94.84792 * 359.81165 * 4 3 2 6 6 O 1.21822 * 127.05840 * 180.19998 * 5 4 3 7 7 N 1.34248 * 105.88124 * 0.31779 * 5 4 3 8 8 C 1.46496 * 121.37780 * 179.87730 * 7 5 4 9 9 C 1.52997 * 109.47294 * 269.72251 * 8 7 5 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.53004 * 110.88721 * 300.69710 * 13 12 10 15 15 C 1.55167 * 111.00202 * 176.82086 * 13 12 10 16 16 C 1.54317 * 102.94099 * 277.42588 * 15 13 12 17 17 N 1.47023 * 107.27429 * 337.80552 * 16 15 13 18 18 C 1.36938 * 125.65087 * 178.97766 * 17 16 15 19 19 H 1.07997 * 119.99771 * 179.97438 * 18 17 16 20 20 C 1.38807 * 119.99802 * 359.97401 * 18 17 16 21 21 N 1.31613 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46907 * 90.00208 * 22 20 18 24 24 H 1.48499 * 109.47005 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47081 * 330.00561 * 22 20 18 26 26 C 1.47532 * 108.71496 * 358.94615 * 17 16 15 27 27 H 1.09000 * 109.47749 * 269.97386 * 1 2 3 28 28 H 1.09001 * 109.47312 * 29.97531 * 1 2 3 29 29 H 1.09002 * 109.47020 * 149.97517 * 1 2 3 30 30 H 1.08004 * 127.34300 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47059 * 149.72540 * 8 7 5 32 32 H 1.09004 * 109.47074 * 29.72497 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00150 * 9 8 7 34 34 H 1.09000 * 109.47611 * 300.00447 * 9 8 7 35 35 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 36 36 H 1.08995 * 109.46670 * 59.30843 * 14 13 12 37 37 H 1.08999 * 109.46992 * 179.30422 * 14 13 12 38 38 H 1.09000 * 109.46956 * 299.30097 * 14 13 12 39 39 H 1.08995 * 110.71731 * 35.78912 * 15 13 12 40 40 H 1.09000 * 110.71750 * 159.06373 * 15 13 12 41 41 H 1.09000 * 109.88390 * 97.22342 * 16 15 13 42 42 H 1.09002 * 109.88376 * 218.38822 * 16 15 13 43 43 H 0.97004 * 120.00192 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.36453 * 265.30691 * 26 17 16 45 45 H 1.08996 * 110.41323 * 142.95051 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0008 5 6 3.5606 -1.0574 0.0046 6 8 4.3673 -1.9703 0.0096 7 7 2.2221 -1.1605 -0.0005 8 6 1.5576 -2.4661 -0.0007 9 6 1.3258 -2.9202 -1.4432 10 6 0.6428 -4.2636 -1.4434 11 8 0.3681 -4.8042 -0.3931 12 7 0.3373 -4.8641 -2.6106 13 6 -0.3271 -6.1697 -2.6106 14 6 0.5209 -7.2134 -1.8808 15 6 -0.6509 -6.6289 -4.0570 16 6 -1.9712 -5.8923 -4.3661 17 7 -2.5964 -5.5579 -3.0781 18 6 -3.7759 -4.8816 -2.9152 19 1 -4.1528 -4.6848 -1.9225 20 6 -4.4870 -4.4490 -4.0261 21 7 -4.0279 -4.6893 -5.2359 22 14 -6.0965 -3.5270 -3.8039 23 1 -5.8244 -2.0695 -3.7197 24 1 -6.9863 -3.7985 -4.9613 25 1 -6.7579 -3.9800 -2.5539 26 6 -1.7431 -6.0722 -1.9900 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8152 2.1367 0.0004 31 1 0.5998 -2.3863 0.5135 32 1 2.1862 -3.1937 0.5128 33 1 2.2836 -2.9999 -1.9573 34 1 0.6973 -2.1926 -1.9567 35 1 0.5574 -4.4318 -3.4505 36 1 0.6857 -6.8927 -0.8522 37 1 0.0004 -8.1710 -1.8839 38 1 1.4806 -7.3198 -2.3865 39 1 0.1348 -6.3175 -4.7454 40 1 -0.7935 -7.7088 -4.0959 41 1 -1.7646 -4.9801 -4.9258 42 1 -2.6317 -6.5411 -4.9414 43 1 -4.5247 -4.3867 -6.0122 44 1 -2.0865 -7.0566 -1.6717 45 1 -1.7416 -5.3796 -1.1484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270599937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -12.536748 kcal Electronic energy + Delta-G solvation = -27922.316831 eV Core-core repulsion = 24067.616282 eV Total energy + Delta-G solvation = -3854.700549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.28305 -39.86853 -37.79809 -37.40505 -34.01025 -33.55670 -32.07015 -31.33696 -30.03199 -28.75406 -28.17293 -25.72452 -25.20845 -23.77140 -23.25330 -21.00760 -20.41391 -20.06855 -19.09349 -18.27795 -17.65784 -17.02193 -16.49582 -16.20621 -15.60774 -15.51614 -15.08393 -14.68507 -14.50530 -14.10542 -13.93603 -13.84375 -13.74655 -13.42647 -13.21480 -12.84654 -12.75492 -12.50266 -12.07257 -11.96078 -11.85647 -11.70191 -11.57799 -11.40537 -11.38104 -10.94839 -10.91173 -10.45392 -10.40561 -10.25762 -10.12633 -10.04216 -9.85919 -9.70267 -9.32636 -8.70928 -8.58307 -8.18690 -6.84505 -5.75038 -3.07204 0.74022 1.14308 1.56232 1.93262 2.50008 2.84369 3.35389 3.41771 3.43539 3.44496 4.26763 4.46401 4.58300 4.59507 4.82280 4.86585 5.09561 5.10017 5.17951 5.27842 5.28796 5.35185 5.41464 5.45221 5.50667 5.58775 5.69418 5.75358 5.91716 5.98667 6.10092 6.13710 6.32438 6.36889 6.49824 6.51863 6.64344 6.76111 7.07226 7.10007 7.50184 7.52627 7.75301 7.82117 8.21741 8.47249 9.19177 9.79321 10.45655 11.36879 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003205 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.427866 B = 8735.339664 C =10339.810569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.109 3.891 3 C -0.242 4.242 4 S -0.008 6.008 5 C 0.480 3.520 6 O -0.472 6.472 7 N -0.532 5.532 8 C 0.118 3.882 9 C -0.159 4.159 10 C 0.524 3.476 11 O -0.542 6.542 12 N -0.698 5.698 13 C 0.156 3.844 14 C -0.151 4.151 15 C -0.147 4.147 16 C 0.178 3.822 17 N -0.603 5.603 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.924 5.924 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.133 3.867 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.191 0.809 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.399 0.601 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.890 8.980 7.390 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.002 4.002 3 C -0.380 4.380 4 S 0.235 5.765 5 C 0.162 3.838 6 O -0.352 6.352 7 N -0.253 5.253 8 C -0.006 4.006 9 C -0.200 4.200 10 C 0.309 3.691 11 O -0.420 6.420 12 N -0.348 5.348 13 C 0.069 3.931 14 C -0.209 4.209 15 C -0.186 4.186 16 C 0.053 3.947 17 N -0.330 5.330 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.572 5.572 22 Si 0.741 3.259 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.007 3.993 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.209 0.791 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.233 0.767 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.196 8.731 7.996 18.485 hybrid contribution -2.005 0.066 -0.579 2.088 sum 12.191 8.797 7.418 16.764 Atomic orbital electron populations 1.20862 0.86271 1.05157 1.04303 1.19549 0.96064 0.84817 0.99764 1.24878 0.92917 1.01342 1.18908 1.85116 1.08861 1.01451 1.81117 1.21606 0.83836 0.95637 0.82705 1.90975 1.48656 1.42395 1.53155 1.46169 1.06347 1.08011 1.64737 1.21621 0.99970 0.82016 0.97043 1.21988 1.02887 0.96678 0.98456 1.20019 0.78742 0.86128 0.84201 1.90664 1.54329 1.65800 1.31219 1.45788 1.59880 1.21024 1.08066 1.21508 0.92838 0.81772 0.96947 1.22009 0.98946 0.98014 1.01963 1.23235 1.00441 1.01039 0.93869 1.21146 0.88302 0.97082 0.88169 1.44474 1.22723 1.65611 1.00167 1.19049 0.95808 1.27462 0.92803 0.90619 1.24761 0.99064 1.01391 0.95268 1.69945 1.39247 1.51244 0.96748 0.86144 0.83278 0.79525 0.76979 1.21725 1.21698 1.20726 1.21882 0.87602 0.97432 0.92426 0.89397 0.88914 0.89908 0.79140 0.87724 0.87799 0.88570 0.88181 0.76708 0.90713 0.91875 0.93192 0.91772 0.90862 0.93679 0.93850 0.93843 0.95716 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.30 36.01 0.33 -0.40 16 2 C 0.11 0.95 6.59 -82.51 -0.54 0.40 16 3 C -0.24 -1.88 11.24 28.82 0.32 -1.56 16 4 S -0.01 -0.08 22.97 -107.50 -2.47 -2.55 16 5 C 0.48 6.14 8.27 53.82 0.45 6.58 16 6 O -0.47 -7.50 17.55 5.08 0.09 -7.41 16 7 N -0.53 -5.79 2.60 -117.28 -0.31 -6.10 16 8 C 0.12 1.35 4.27 -4.05 -0.02 1.33 16 9 C -0.16 -1.84 5.93 -27.88 -0.17 -2.01 16 10 C 0.52 7.86 7.21 -10.98 -0.08 7.78 16 11 O -0.54 -9.56 12.79 5.56 0.07 -9.49 16 12 N -0.70 -10.69 5.18 -45.62 -0.24 -10.93 16 13 C 0.16 2.66 0.82 -129.67 -0.11 2.55 16 14 C -0.15 -2.27 8.57 37.16 0.32 -1.96 16 15 C -0.15 -2.54 5.98 -24.89 -0.15 -2.69 16 16 C 0.18 4.07 5.36 -3.07 -0.02 4.05 16 17 N -0.60 -14.92 3.40 -169.99 -0.58 -15.49 16 18 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 21 N -0.92 -26.24 10.31 55.49 0.57 -25.67 16 22 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.13 2.82 6.14 -2.47 -0.02 2.80 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.08 0.67 6.22 -51.93 -0.32 0.35 16 30 H 0.19 0.92 8.06 -52.48 -0.42 0.49 16 31 H 0.10 1.13 6.79 -51.93 -0.35 0.77 16 32 H 0.10 1.34 7.75 -51.93 -0.40 0.93 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.10 1.06 7.52 -51.93 -0.39 0.67 16 35 H 0.40 5.44 8.50 -40.82 -0.35 5.10 16 36 H 0.07 1.22 6.23 -51.93 -0.32 0.90 16 37 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.96 8.06 -51.93 -0.42 0.54 16 40 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 41 H 0.05 1.12 7.38 -51.93 -0.38 0.74 16 42 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.03 0.53 8.03 -51.92 -0.42 0.12 16 45 H 0.05 1.17 6.59 -51.93 -0.34 0.83 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -32.76 374.58 -8.74 -41.50 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.59 Total: 3.57 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 0.08 Total: 10.32 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.55 Total: -58.19 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.16 Total: -16.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.47 Total: -2.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.76 -8.74 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270599937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.965 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds