Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32556 * 121.64486 * 2 1 4 4 S 1.77228 * 105.31924 * 180.02562 * 3 2 1 5 5 C 1.72211 * 94.84792 * 359.81165 * 4 3 2 6 6 O 1.21822 * 127.05840 * 180.19998 * 5 4 3 7 7 N 1.34248 * 105.88124 * 0.31779 * 5 4 3 8 8 C 1.46496 * 121.37780 * 179.87730 * 7 5 4 9 9 C 1.52997 * 109.47294 * 269.72251 * 8 7 5 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99544 * 180.02562 * 12 10 9 14 14 C 1.53004 * 110.88721 * 300.69710 * 13 12 10 15 15 C 1.55167 * 111.00202 * 176.82086 * 13 12 10 16 16 C 1.54317 * 102.94099 * 277.42588 * 15 13 12 17 17 N 1.47023 * 107.27429 * 337.80552 * 16 15 13 18 18 C 1.36938 * 125.65087 * 178.97766 * 17 16 15 19 19 H 1.07997 * 119.99771 * 179.97438 * 18 17 16 20 20 C 1.38807 * 119.99802 * 359.97401 * 18 17 16 21 21 N 1.31613 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99872 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46907 * 90.00208 * 22 20 18 24 24 H 1.48499 * 109.47005 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47081 * 330.00561 * 22 20 18 26 26 C 1.47532 * 108.71496 * 358.94615 * 17 16 15 27 27 H 1.09000 * 109.47749 * 269.97386 * 1 2 3 28 28 H 1.09001 * 109.47312 * 29.97531 * 1 2 3 29 29 H 1.09002 * 109.47020 * 149.97517 * 1 2 3 30 30 H 1.08004 * 127.34300 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47059 * 149.72540 * 8 7 5 32 32 H 1.09004 * 109.47074 * 29.72497 * 8 7 5 33 33 H 1.09001 * 109.46832 * 60.00150 * 9 8 7 34 34 H 1.09000 * 109.47611 * 300.00447 * 9 8 7 35 35 H 0.96994 * 119.99756 * 0.02562 * 12 10 9 36 36 H 1.08995 * 109.46670 * 59.30843 * 14 13 12 37 37 H 1.08999 * 109.46992 * 179.30422 * 14 13 12 38 38 H 1.09000 * 109.46956 * 299.30097 * 14 13 12 39 39 H 1.08995 * 110.71731 * 35.78912 * 15 13 12 40 40 H 1.09000 * 110.71750 * 159.06373 * 15 13 12 41 41 H 1.09000 * 109.88390 * 97.22342 * 16 15 13 42 42 H 1.09002 * 109.88376 * 218.38822 * 16 15 13 43 43 H 0.97004 * 120.00192 * 180.02562 * 21 20 18 44 44 H 1.09007 * 110.36453 * 265.30691 * 26 17 16 45 45 H 1.08996 * 110.41323 * 142.95051 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6303 -0.0008 5 6 3.5606 -1.0574 0.0046 6 8 4.3673 -1.9703 0.0096 7 7 2.2221 -1.1605 -0.0005 8 6 1.5576 -2.4661 -0.0007 9 6 1.3258 -2.9202 -1.4432 10 6 0.6428 -4.2636 -1.4434 11 8 0.3681 -4.8042 -0.3931 12 7 0.3373 -4.8641 -2.6106 13 6 -0.3271 -6.1697 -2.6106 14 6 0.5209 -7.2134 -1.8808 15 6 -0.6509 -6.6289 -4.0570 16 6 -1.9712 -5.8923 -4.3661 17 7 -2.5964 -5.5579 -3.0781 18 6 -3.7759 -4.8816 -2.9152 19 1 -4.1528 -4.6848 -1.9225 20 6 -4.4870 -4.4490 -4.0261 21 7 -4.0279 -4.6893 -5.2359 22 14 -6.0965 -3.5270 -3.8039 23 1 -5.8244 -2.0695 -3.7197 24 1 -6.9863 -3.7985 -4.9613 25 1 -6.7579 -3.9800 -2.5539 26 6 -1.7431 -6.0722 -1.9900 27 1 -0.3634 -0.0005 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5142 30 1 1.8152 2.1367 0.0004 31 1 0.5998 -2.3863 0.5135 32 1 2.1862 -3.1937 0.5128 33 1 2.2836 -2.9999 -1.9573 34 1 0.6973 -2.1926 -1.9567 35 1 0.5574 -4.4318 -3.4505 36 1 0.6857 -6.8927 -0.8522 37 1 0.0004 -8.1710 -1.8839 38 1 1.4806 -7.3198 -2.3865 39 1 0.1348 -6.3175 -4.7454 40 1 -0.7935 -7.7088 -4.0959 41 1 -1.7646 -4.9801 -4.9258 42 1 -2.6317 -6.5411 -4.9414 43 1 -4.5247 -4.3867 -6.0122 44 1 -2.0865 -7.0566 -1.6717 45 1 -1.7416 -5.3796 -1.1484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270599937.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -34.186679 kcal Electronic energy + Delta-G solvation = -27923.255642 eV Core-core repulsion = 24067.616282 eV Total energy + Delta-G solvation = -3855.639360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.15787 -41.17146 -38.98813 -38.65860 -35.68431 -34.49764 -33.62136 -32.35034 -31.53608 -30.35498 -28.96526 -27.50741 -26.16017 -25.36253 -24.22573 -22.37950 -21.79292 -21.20446 -20.46984 -19.07540 -19.00902 -18.50328 -17.60210 -17.26354 -17.00077 -16.69031 -16.59660 -16.01902 -15.64656 -15.45314 -15.29684 -14.79504 -14.61154 -14.50626 -14.42568 -14.06098 -13.85770 -13.75307 -13.53979 -13.37909 -13.14619 -13.07121 -12.81780 -12.73039 -12.39068 -12.33871 -12.12905 -12.10786 -12.03039 -11.96298 -11.68767 -11.56263 -11.21184 -10.78611 -10.69682 -10.52290 -9.99393 -8.97496 -8.85680 -7.84023 -5.18071 -0.12494 0.36689 0.83414 1.09851 1.45972 1.47731 1.56428 1.62925 1.66698 2.28714 2.49896 3.34614 3.47932 3.58923 3.62904 3.67983 3.72148 3.95075 4.04923 4.18334 4.20216 4.29449 4.39004 4.55510 4.62803 4.67410 4.69996 4.71516 4.79380 4.83026 4.86288 4.92248 4.99023 5.03357 5.07656 5.27067 5.35125 5.44578 5.64257 5.69094 5.72932 5.78226 6.20660 6.21331 6.60235 7.12674 7.27108 7.78615 8.43332 9.25801 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012335 B = 0.003205 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.427866 B = 8735.339664 C =10339.810569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.091 3.909 3 C -0.221 4.221 4 S 0.006 5.994 5 C 0.461 3.539 6 O -0.519 6.519 7 N -0.530 5.530 8 C 0.124 3.876 9 C -0.145 4.145 10 C 0.521 3.479 11 O -0.570 6.570 12 N -0.698 5.698 13 C 0.166 3.834 14 C -0.142 4.142 15 C -0.130 4.130 16 C 0.186 3.814 17 N -0.620 5.620 18 C -0.241 4.241 19 H 0.072 0.928 20 C -0.058 4.058 21 N -0.946 5.946 22 Si 0.973 3.027 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.275 1.275 26 C 0.131 3.869 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.067 0.933 30 H 0.228 0.772 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.408 0.592 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.006 0.994 43 H 0.247 0.753 44 H 0.022 0.978 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.164 10.588 7.491 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.019 4.019 3 C -0.358 4.358 4 S 0.249 5.751 5 C 0.144 3.856 6 O -0.403 6.403 7 N -0.250 5.250 8 C -0.001 4.001 9 C -0.186 4.186 10 C 0.308 3.692 11 O -0.450 6.450 12 N -0.349 5.349 13 C 0.079 3.921 14 C -0.200 4.200 15 C -0.169 4.169 16 C 0.062 3.938 17 N -0.346 5.346 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.251 4.251 21 N -0.595 5.595 22 Si 0.802 3.198 23 H -0.208 1.208 24 H -0.221 1.221 25 H -0.200 1.200 26 C 0.005 3.995 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.244 0.756 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.244 0.756 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.024 0.976 43 H 0.056 0.944 44 H 0.040 0.960 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.470 10.374 8.108 19.564 hybrid contribution -2.130 -0.365 -0.563 2.233 sum 12.340 10.009 7.546 17.590 Atomic orbital electron populations 1.20924 0.84742 1.05486 1.05078 1.19916 0.96966 0.84222 1.00751 1.25414 0.91030 1.02548 1.16770 1.85098 1.10695 0.99024 1.80284 1.22013 0.84119 0.96474 0.82964 1.90937 1.49871 1.44122 1.55380 1.46175 1.06022 1.08491 1.64291 1.21461 0.99710 0.82207 0.96750 1.21883 1.02989 0.94854 0.98836 1.20535 0.78187 0.86926 0.83556 1.90655 1.55420 1.66704 1.32175 1.45788 1.59570 1.20712 1.08790 1.21343 0.91062 0.83299 0.96389 1.21930 0.99636 0.97494 1.00957 1.23105 0.97977 1.01270 0.94503 1.20920 0.90204 0.95757 0.86968 1.44710 1.22663 1.65400 1.01827 1.19331 0.97107 1.27744 0.92778 0.91057 1.25512 1.02146 1.02471 0.95020 1.70149 1.40212 1.52037 0.97145 0.85160 0.79403 0.78506 0.76749 1.20843 1.22101 1.20041 1.21972 0.89805 0.96365 0.91337 0.88415 0.86727 0.91370 0.75557 0.87231 0.89731 0.87810 0.86769 0.75602 0.92126 0.90878 0.90946 0.88665 0.89329 0.96231 0.97561 0.94392 0.96045 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.16 9.30 71.24 0.66 -0.50 16 2 C 0.09 1.38 6.59 40.71 0.27 1.65 16 3 C -0.22 -2.72 11.24 66.67 0.75 -1.97 16 4 S 0.01 0.11 22.97 -56.49 -1.30 -1.19 16 5 C 0.46 11.69 8.27 129.87 1.07 12.76 16 6 O -0.52 -16.99 17.55 -4.74 -0.08 -17.07 16 7 N -0.53 -11.11 2.60 -643.44 -1.68 -12.78 16 8 C 0.12 2.81 4.27 86.38 0.37 3.18 16 9 C -0.14 -3.25 5.93 29.85 0.18 -3.07 16 10 C 0.52 15.37 7.21 87.66 0.63 16.00 16 11 O -0.57 -20.16 12.79 -3.02 -0.04 -20.20 16 12 N -0.70 -20.62 5.18 -416.64 -2.16 -22.77 16 13 C 0.17 5.47 0.82 5.00 0.00 5.47 16 14 C -0.14 -4.00 8.57 71.98 0.62 -3.38 16 15 C -0.13 -4.28 5.98 31.78 0.19 -4.09 16 16 C 0.19 8.63 5.36 86.73 0.47 9.09 16 17 N -0.62 -31.10 3.40 -691.73 -2.35 -33.45 16 18 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 19 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.06 -3.22 5.49 84.86 0.47 -2.76 16 21 N -0.95 -54.72 10.31 21.65 0.22 -54.50 16 22 Si 0.97 44.60 29.55 68.60 2.03 46.62 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.13 5.57 6.14 86.83 0.53 6.11 16 27 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.07 1.00 6.22 -2.39 -0.01 0.98 16 30 H 0.23 1.08 8.06 -2.91 -0.02 1.06 16 31 H 0.11 2.34 6.79 -2.39 -0.02 2.33 16 32 H 0.08 2.26 7.75 -2.38 -0.02 2.24 16 33 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.11 2.26 7.52 -2.39 -0.02 2.24 16 35 H 0.41 10.51 8.50 -92.71 -0.79 9.72 16 36 H 0.06 1.92 6.23 -2.39 -0.01 1.91 16 37 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 2.58 8.06 -2.39 -0.02 2.56 16 40 H 0.09 2.68 8.04 -2.39 -0.02 2.66 16 41 H 0.02 0.99 7.38 -2.39 -0.02 0.97 16 42 H 0.01 0.33 7.50 -2.39 -0.02 0.31 16 43 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 44 H 0.02 0.93 8.03 -2.38 -0.02 0.91 16 45 H 0.03 1.59 6.59 -2.39 -0.02 1.58 16 Total: -1.00 -73.45 374.58 1.95 -71.50 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.23 Total: 17.82 kcal Atomic # 6 Polarization: 18.95 SS G_CDS: 7.07 Total: 26.02 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -5.96 Total: -123.50 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.12 Total: -37.27 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -1.30 Total: -1.19 kcal Total: -73.45 1.95 -71.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270599937.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.312 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds