Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46890 * 2 1 4 4 N 1.30943 * 122.89870 * 269.99092 * 3 2 1 5 5 C 1.29430 * 117.36350 * 180.02562 * 4 3 2 6 6 S 1.70955 * 110.38889 * 359.72732 * 5 4 3 7 7 C 1.35655 * 122.90526 * 89.99892 * 3 2 1 8 8 C 1.46679 * 126.13285 * 359.97438 * 7 3 2 9 9 O 1.21683 * 120.00004 * 47.39189 * 8 7 3 10 10 N 1.34779 * 119.99876 * 227.39528 * 8 7 3 11 11 C 1.47148 * 120.98267 * 355.84857 * 10 8 7 12 12 C 1.53299 * 108.38233 * 129.44575 * 11 10 8 13 13 O 1.42965 * 109.22159 * 52.30273 * 12 11 10 14 14 C 1.42951 * 114.16696 * 297.41911 * 13 12 11 15 15 H 1.09004 * 109.51506 * 302.65823 * 14 13 12 16 16 C 1.53006 * 109.51483 * 182.50626 * 14 13 12 17 17 H 1.08993 * 109.47202 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46888 * 59.99668 * 16 14 13 19 19 N 1.46499 * 109.46826 * 299.99886 * 16 14 13 20 20 C 1.36936 * 120.00070 * 204.99700 * 19 16 14 21 21 H 1.07992 * 120.00108 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00069 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99871 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00045 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47301 * 89.99445 * 24 22 20 26 26 H 1.48505 * 109.46810 * 209.99659 * 24 22 20 27 27 H 1.48498 * 109.47154 * 329.99339 * 24 22 20 28 28 C 1.47151 * 120.98130 * 175.83264 * 10 8 7 29 29 H 1.09004 * 109.46971 * 60.00477 * 1 2 3 30 30 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47283 * 300.00799 * 1 2 3 32 32 H 1.08997 * 109.47283 * 239.99201 * 2 1 3 33 33 H 1.08999 * 109.46553 * 119.99301 * 2 1 3 34 34 H 1.07995 * 124.80551 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.68603 * 9.72468 * 11 10 8 36 36 H 1.09005 * 109.68505 * 249.16675 * 11 10 8 37 37 H 1.08997 * 109.51448 * 292.37661 * 12 11 10 38 38 H 1.09002 * 109.50988 * 172.22439 * 12 11 10 39 39 H 1.09002 * 109.46935 * 60.00566 * 18 16 14 40 40 H 1.09004 * 109.47019 * 180.02562 * 18 16 14 41 41 H 1.09004 * 109.47262 * 300.00435 * 18 16 14 42 42 H 0.97004 * 120.00075 * 25.00335 * 19 16 14 43 43 H 0.97000 * 119.99648 * 180.02562 * 23 22 20 44 44 H 1.09004 * 109.68367 * 350.27571 * 28 10 8 45 45 H 1.08999 * 109.68603 * 110.83133 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0913 -1.0994 5 6 2.6994 3.3058 -0.9746 6 16 2.8385 3.7214 0.6778 7 6 2.2779 2.1156 1.1389 8 6 2.1025 1.6211 2.5086 9 8 2.5387 0.5291 2.8218 10 7 1.4581 2.3761 3.4204 11 6 1.0017 3.7358 3.0915 12 6 -0.4747 3.8587 3.4856 13 8 -0.6348 3.4466 4.8452 14 6 -0.2955 2.0790 5.0861 15 1 -0.8985 1.4359 4.4450 16 6 -0.5640 1.7365 6.5529 17 1 -0.3046 0.6938 6.7359 18 6 -2.0455 1.9565 6.8650 19 7 0.2496 2.5997 7.4127 20 6 0.5889 2.1863 8.6733 21 1 0.2571 1.2239 9.0336 22 6 1.3594 3.0044 9.4882 23 7 1.7643 4.1773 9.0489 24 14 1.8228 2.4402 11.2076 25 1 3.1091 1.7001 11.1558 26 1 1.9673 3.6227 12.0943 27 1 0.7602 1.5495 11.7394 28 6 1.1900 1.8650 4.7739 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9322 3.9650 -1.7977 35 1 1.1117 3.9113 2.0214 36 1 1.5916 4.4654 3.6463 37 1 -1.0784 3.2221 2.8388 38 1 -0.7949 4.8952 3.3792 39 1 -2.6509 1.3143 6.2253 40 1 -2.2368 1.7129 7.9102 41 1 -2.3045 2.9994 6.6821 42 1 0.5480 3.4641 7.0890 43 1 2.3030 4.7488 9.6182 44 1 1.4249 0.8015 4.8180 45 1 1.7989 2.4062 5.4981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276777801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -13.389960 kcal Electronic energy + Delta-G solvation = -28274.999820 eV Core-core repulsion = 24420.262273 eV Total energy + Delta-G solvation = -3854.737547 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.78830 -39.81213 -38.24886 -35.55151 -34.59356 -33.76930 -32.34336 -30.70984 -29.93867 -28.41736 -27.74994 -26.19951 -24.29219 -23.56836 -23.47707 -22.77787 -20.79667 -19.75028 -18.72011 -18.66488 -17.36055 -17.06072 -16.60638 -16.03580 -15.70040 -15.09426 -14.94038 -14.74031 -14.63693 -14.37331 -14.28818 -13.99882 -13.74192 -13.39302 -13.24463 -12.97057 -12.71952 -12.43088 -12.22816 -12.00642 -11.90329 -11.50779 -11.42538 -11.22310 -11.16373 -10.86235 -10.78676 -10.54338 -10.39559 -10.23240 -10.01495 -9.94379 -9.88242 -9.59730 -9.57565 -9.11745 -8.92849 -8.46467 -6.93275 -5.74226 -3.02734 0.05174 0.83183 1.25546 2.25736 2.69140 2.94434 3.45227 3.50795 3.51883 3.81553 3.92644 4.30900 4.60618 4.68137 4.73718 4.76688 4.90329 5.05554 5.09879 5.17449 5.23866 5.26853 5.34412 5.44379 5.60411 5.64970 5.72107 5.73190 5.74129 5.79122 5.88745 5.97171 6.06849 6.18836 6.27172 6.38795 6.48678 6.64746 6.76780 7.12286 7.19776 7.33282 7.42486 7.72358 7.96347 8.44028 9.56487 10.12874 10.50117 11.47991 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003103 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.349247 B = 9019.907438 C = 9329.139782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.134 3.866 4 N -0.469 5.469 5 C 0.019 3.981 6 S 0.180 5.820 7 C -0.283 4.283 8 C 0.596 3.404 9 O -0.520 6.520 10 N -0.601 5.601 11 C 0.061 3.939 12 C 0.051 3.949 13 O -0.356 6.356 14 C 0.078 3.922 15 H 0.056 0.944 16 C 0.183 3.817 17 H 0.061 0.939 18 C -0.160 4.160 19 N -0.717 5.717 20 C -0.239 4.239 21 H 0.070 0.930 22 C -0.011 4.011 23 N -0.930 5.930 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.087 3.913 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.205 0.795 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.390 0.610 43 H 0.254 0.746 44 H 0.099 0.901 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -0.432 -22.245 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.003 4.003 4 N -0.182 5.182 5 C -0.277 4.277 6 S 0.435 5.565 7 C -0.407 4.407 8 C 0.382 3.618 9 O -0.398 6.398 10 N -0.334 5.334 11 C -0.063 4.063 12 C -0.027 4.027 13 O -0.274 6.274 14 C 0.019 3.981 15 H 0.074 0.926 16 C 0.072 3.928 17 H 0.078 0.922 18 C -0.220 4.220 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.207 4.207 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C -0.034 4.034 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.221 0.779 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.225 0.775 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.773 -0.213 -21.794 21.867 hybrid contribution 0.287 -0.612 0.455 0.815 sum -1.486 -0.825 -21.339 21.407 Atomic orbital electron populations 1.21687 0.93910 1.02417 1.01964 1.20380 0.96476 0.88639 1.04818 1.20573 0.96774 0.98064 0.84887 1.66094 1.14856 1.06129 1.31157 1.28768 1.01677 0.96169 1.01039 1.84223 1.59062 1.10820 1.02354 1.25496 1.17022 0.98933 0.99232 1.16726 0.78385 0.84464 0.82267 1.90826 1.49033 1.20898 1.78993 1.48105 1.56459 1.15458 1.13409 1.22794 0.97806 0.84007 1.01741 1.22852 0.93403 1.01328 0.85113 1.88121 1.87140 1.27312 1.24818 1.22948 0.93067 0.83071 0.99054 0.92638 1.20257 0.91599 0.95263 0.85678 0.92159 1.22350 0.97694 1.01217 1.00789 1.42388 1.60232 1.19909 1.13454 1.19239 1.26169 1.01044 0.90604 0.91199 1.24712 1.00950 0.96608 0.98464 1.69674 1.41177 1.10324 1.36653 0.86231 0.78314 0.77283 0.84598 1.21785 1.21875 1.20807 1.22539 0.97749 1.02236 0.80860 0.92407 0.91518 0.92816 0.89688 0.88358 0.77857 0.89547 0.89362 0.93242 0.87700 0.94854 0.92702 0.92538 0.77524 0.93606 0.88309 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.06 -0.71 6.13 -27.88 -0.17 -0.88 16 3 C 0.13 1.62 6.04 -83.90 -0.51 1.12 16 4 N -0.47 -5.19 10.50 -11.54 -0.12 -5.31 16 5 C 0.02 0.15 12.22 51.75 0.63 0.79 16 6 S 0.18 1.62 20.29 -107.50 -2.18 -0.56 16 7 C -0.28 -3.57 5.42 -37.10 -0.20 -3.77 16 8 C 0.60 9.14 7.24 -12.85 -0.09 9.04 16 9 O -0.52 -9.49 15.01 5.20 0.08 -9.41 16 10 N -0.60 -8.91 3.02 -173.82 -0.52 -9.43 16 11 C 0.06 0.73 6.08 -3.53 -0.02 0.71 16 12 C 0.05 0.62 6.99 37.31 0.26 0.88 16 13 O -0.36 -5.88 9.22 -35.23 -0.32 -6.20 16 14 C 0.08 1.29 2.53 -26.57 -0.07 1.22 16 15 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 16 C 0.18 3.55 2.74 -67.93 -0.19 3.36 16 17 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 18 C -0.16 -2.91 9.35 37.16 0.35 -2.56 16 19 N -0.72 -17.41 4.28 -53.43 -0.23 -17.64 16 20 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 23 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 24 Si 0.90 22.28 29.55 -169.99 -5.02 17.25 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.09 1.50 5.85 -3.53 -0.02 1.48 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.26 6.41 -51.93 -0.33 0.92 16 34 H 0.20 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.09 0.86 4.35 -36.14 -0.16 0.70 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 42 H 0.39 10.22 7.20 -40.82 -0.29 9.92 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.10 1.75 7.11 -51.93 -0.37 1.38 16 45 H 0.10 2.05 7.26 -51.93 -0.38 1.67 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -32.63 375.86 -8.39 -41.02 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.54 Total: 8.24 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 0.10 Total: 3.33 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.15 Total: -59.33 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.25 Total: -15.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.18 Total: -0.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.63 -8.39 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.627 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds