Wall clock time and date at job start Sat Apr 11 2020 05:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46890 * 2 1 4 4 N 1.30943 * 122.89870 * 269.99092 * 3 2 1 5 5 C 1.29430 * 117.36350 * 180.02562 * 4 3 2 6 6 S 1.70955 * 110.38889 * 359.72732 * 5 4 3 7 7 C 1.35655 * 122.90526 * 89.99892 * 3 2 1 8 8 C 1.46679 * 126.13285 * 359.97438 * 7 3 2 9 9 O 1.21683 * 120.00004 * 47.39189 * 8 7 3 10 10 N 1.34779 * 119.99876 * 227.39528 * 8 7 3 11 11 C 1.47148 * 120.98267 * 355.84857 * 10 8 7 12 12 C 1.53299 * 108.38233 * 129.44575 * 11 10 8 13 13 O 1.42965 * 109.22159 * 52.30273 * 12 11 10 14 14 C 1.42951 * 114.16696 * 297.41911 * 13 12 11 15 15 H 1.09004 * 109.51506 * 302.65823 * 14 13 12 16 16 C 1.53006 * 109.51483 * 182.50626 * 14 13 12 17 17 H 1.08993 * 109.47202 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46888 * 59.99668 * 16 14 13 19 19 N 1.46499 * 109.46826 * 299.99886 * 16 14 13 20 20 C 1.36936 * 120.00070 * 204.99700 * 19 16 14 21 21 H 1.07992 * 120.00108 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00069 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99871 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00045 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47301 * 89.99445 * 24 22 20 26 26 H 1.48505 * 109.46810 * 209.99659 * 24 22 20 27 27 H 1.48498 * 109.47154 * 329.99339 * 24 22 20 28 28 C 1.47151 * 120.98130 * 175.83264 * 10 8 7 29 29 H 1.09004 * 109.46971 * 60.00477 * 1 2 3 30 30 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47283 * 300.00799 * 1 2 3 32 32 H 1.08997 * 109.47283 * 239.99201 * 2 1 3 33 33 H 1.08999 * 109.46553 * 119.99301 * 2 1 3 34 34 H 1.07995 * 124.80551 * 180.02562 * 5 4 3 35 35 H 1.08997 * 109.68603 * 9.72468 * 11 10 8 36 36 H 1.09005 * 109.68505 * 249.16675 * 11 10 8 37 37 H 1.08997 * 109.51448 * 292.37661 * 12 11 10 38 38 H 1.09002 * 109.50988 * 172.22439 * 12 11 10 39 39 H 1.09002 * 109.46935 * 60.00566 * 18 16 14 40 40 H 1.09004 * 109.47019 * 180.02562 * 18 16 14 41 41 H 1.09004 * 109.47262 * 300.00435 * 18 16 14 42 42 H 0.97004 * 120.00075 * 25.00335 * 19 16 14 43 43 H 0.97000 * 119.99648 * 180.02562 * 23 22 20 44 44 H 1.09004 * 109.68367 * 350.27571 * 28 10 8 45 45 H 1.08999 * 109.68603 * 110.83133 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0913 -1.0994 5 6 2.6994 3.3058 -0.9746 6 16 2.8385 3.7214 0.6778 7 6 2.2779 2.1156 1.1389 8 6 2.1025 1.6211 2.5086 9 8 2.5387 0.5291 2.8218 10 7 1.4581 2.3761 3.4204 11 6 1.0017 3.7358 3.0915 12 6 -0.4747 3.8587 3.4856 13 8 -0.6348 3.4466 4.8452 14 6 -0.2955 2.0790 5.0861 15 1 -0.8985 1.4359 4.4450 16 6 -0.5640 1.7365 6.5529 17 1 -0.3046 0.6938 6.7359 18 6 -2.0455 1.9565 6.8650 19 7 0.2496 2.5997 7.4127 20 6 0.5889 2.1863 8.6733 21 1 0.2571 1.2239 9.0336 22 6 1.3594 3.0044 9.4882 23 7 1.7643 4.1773 9.0489 24 14 1.8228 2.4402 11.2076 25 1 3.1091 1.7001 11.1558 26 1 1.9673 3.6227 12.0943 27 1 0.7602 1.5495 11.7394 28 6 1.1900 1.8650 4.7739 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 2.9322 3.9650 -1.7977 35 1 1.1117 3.9113 2.0214 36 1 1.5916 4.4654 3.6463 37 1 -1.0784 3.2221 2.8388 38 1 -0.7949 4.8952 3.3792 39 1 -2.6509 1.3143 6.2253 40 1 -2.2368 1.7129 7.9102 41 1 -2.3045 2.9994 6.6821 42 1 0.5480 3.4641 7.0890 43 1 2.3030 4.7488 9.6182 44 1 1.4249 0.8015 4.8180 45 1 1.7989 2.4062 5.4981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276777801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:53 Heat of formation + Delta-G solvation = -35.872618 kcal Electronic energy + Delta-G solvation = -28275.974741 eV Core-core repulsion = 24420.262273 eV Total energy + Delta-G solvation = -3855.712468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.83082 -40.82959 -39.47952 -37.13355 -35.89028 -34.59860 -34.17733 -32.02467 -31.03871 -30.13656 -28.88889 -27.09788 -25.88892 -25.09961 -24.29966 -23.95455 -21.94060 -21.20820 -19.75630 -19.54937 -19.26523 -18.09951 -17.79253 -17.29263 -16.89852 -16.34099 -16.25354 -15.93305 -15.77967 -15.66421 -15.16917 -15.12044 -15.02712 -14.78186 -14.63322 -14.22179 -14.02305 -13.57154 -13.47037 -13.20948 -13.06650 -12.98097 -12.76240 -12.57894 -12.50414 -12.33046 -12.16895 -11.99730 -11.87112 -11.68432 -11.61717 -11.27665 -11.12506 -10.94098 -10.78647 -10.48282 -9.89751 -9.71417 -8.94295 -7.88922 -5.15925 -0.75560 0.02377 0.49923 1.35124 1.48821 1.49732 1.57658 1.58955 1.86749 2.58611 2.75027 3.08131 3.31035 3.44948 3.63907 3.86596 3.89856 3.90407 3.95689 4.04711 4.06531 4.22878 4.24792 4.29515 4.37325 4.49260 4.52903 4.59654 4.69907 4.75970 4.83499 4.92426 4.94959 4.97385 5.07751 5.09488 5.15503 5.24128 5.25926 5.55449 5.61609 6.07724 6.21958 6.33316 6.52649 6.79663 7.40308 8.15870 8.41359 9.34253 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.003103 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.349247 B = 9019.907438 C = 9329.139782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.066 4.066 3 C 0.138 3.862 4 N -0.493 5.493 5 C 0.044 3.956 6 S 0.214 5.786 7 C -0.323 4.323 8 C 0.597 3.403 9 O -0.561 6.561 10 N -0.602 5.602 11 C 0.060 3.940 12 C 0.047 3.953 13 O -0.379 6.379 14 C 0.093 3.907 15 H 0.079 0.921 16 C 0.174 3.826 17 H 0.060 0.940 18 C -0.148 4.148 19 N -0.726 5.726 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.966 3.034 25 H -0.291 1.291 26 H -0.298 1.298 27 H -0.270 1.270 28 C 0.097 3.903 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.249 0.751 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.046 0.954 42 H 0.378 0.622 43 H 0.248 0.752 44 H 0.086 0.914 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.190 0.060 -24.670 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C 0.000 4.000 4 N -0.206 5.206 5 C -0.250 4.250 6 S 0.471 5.529 7 C -0.447 4.447 8 C 0.384 3.616 9 O -0.441 6.441 10 N -0.334 5.334 11 C -0.062 4.062 12 C -0.030 4.030 13 O -0.298 6.298 14 C 0.034 3.966 15 H 0.097 0.903 16 C 0.065 3.935 17 H 0.078 0.922 18 C -0.208 4.208 19 N -0.367 5.367 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.796 3.204 25 H -0.219 1.219 26 H -0.225 1.225 27 H -0.195 1.195 28 C -0.025 4.025 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.211 0.789 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.751 0.271 -24.245 24.402 hybrid contribution 0.590 -0.741 1.031 1.400 sum -2.160 -0.470 -23.214 23.319 Atomic orbital electron populations 1.21631 0.92729 1.03198 1.01664 1.20385 0.97503 0.88597 1.04132 1.20716 0.95849 0.98257 0.85134 1.66175 1.16608 1.07340 1.30508 1.29567 0.98173 0.95496 1.01788 1.84091 1.58276 1.07988 1.02577 1.25240 1.20140 1.01662 0.97671 1.17091 0.77352 0.83873 0.83288 1.90791 1.50593 1.22720 1.80046 1.48124 1.56419 1.16502 1.12373 1.22961 0.97799 0.82257 1.03230 1.23156 0.93471 1.03176 0.83185 1.88079 1.87172 1.26864 1.27668 1.22650 0.92646 0.84042 0.97299 0.90334 1.20498 0.91764 0.94400 0.86876 0.92169 1.22171 0.96821 1.01307 1.00512 1.42493 1.61003 1.19977 1.13252 1.19616 1.24711 1.00816 0.91546 0.90693 1.25441 1.02004 0.97043 1.02056 1.69825 1.42617 1.11551 1.37721 0.85249 0.78029 0.76622 0.80528 1.21882 1.22464 1.19510 1.22167 0.97813 1.00893 0.81667 0.91595 0.90288 0.94008 0.88695 0.90619 0.73503 0.87020 0.89985 0.91584 0.84969 0.91372 0.94273 0.93533 0.78936 0.94299 0.89576 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.89 71.98 0.71 -1.74 16 2 C -0.07 -1.45 6.13 29.85 0.18 -1.27 16 3 C 0.14 3.17 6.04 42.09 0.25 3.43 16 4 N -0.49 -9.58 10.50 -190.41 -2.00 -11.58 16 5 C 0.04 0.55 12.22 130.60 1.60 2.15 16 6 S 0.21 3.32 20.29 -56.49 -1.15 2.17 16 7 C -0.32 -7.87 5.42 23.88 0.13 -7.74 16 8 C 0.60 18.58 7.24 86.45 0.63 19.21 16 9 O -0.56 -21.44 15.01 -4.29 -0.06 -21.51 16 10 N -0.60 -17.99 3.02 -822.06 -2.48 -20.47 16 11 C 0.06 1.39 6.08 86.36 0.53 1.92 16 12 C 0.05 1.05 6.99 72.08 0.50 1.55 16 13 O -0.38 -12.21 9.22 -148.98 -1.37 -13.58 16 14 C 0.09 3.05 2.53 30.70 0.08 3.13 16 15 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 16 C 0.17 6.75 2.74 44.99 0.12 6.88 16 17 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 18 C -0.15 -5.23 9.35 71.98 0.67 -4.56 16 19 N -0.73 -36.08 4.28 -322.95 -1.38 -37.47 16 20 C -0.23 -12.93 9.93 84.03 0.83 -12.09 16 21 H 0.08 3.97 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 24 Si 0.97 46.60 29.55 68.60 2.03 48.62 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 C 0.10 3.46 5.85 86.35 0.51 3.96 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 2.01 6.41 -2.39 -0.02 1.99 16 34 H 0.25 0.71 8.06 -2.91 -0.02 0.68 16 35 H 0.11 1.98 4.35 -12.43 -0.05 1.92 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.47 8.14 -2.38 -0.02 1.46 16 41 H 0.05 1.72 7.68 -2.39 -0.02 1.71 16 42 H 0.38 20.49 7.20 -92.71 -0.67 19.82 16 43 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.09 3.23 7.11 -2.39 -0.02 3.21 16 45 H 0.06 2.75 7.26 -2.39 -0.02 2.74 16 Total: -1.00 -73.35 375.86 1.37 -71.98 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.30 Total: 29.60 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 7.21 Total: 11.09 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -5.58 Total: -128.38 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -1.44 Total: -35.09 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.15 Total: 2.17 kcal Total: -73.35 1.37 -71.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276777801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.103 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds