Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47163 * 2 1 4 4 N 1.29429 * 124.80537 * 89.97253 * 3 2 1 5 5 C 1.30939 * 117.36732 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19115 * 0.02562 * 5 4 3 7 7 C 1.46681 * 126.13193 * 179.97438 * 6 5 4 8 8 O 1.21680 * 119.99900 * 331.37937 * 7 6 5 9 9 N 1.34777 * 119.99766 * 151.36857 * 7 6 5 10 10 C 1.46922 * 120.63275 * 353.55867 * 9 7 6 11 11 C 1.53199 * 108.77399 * 233.58465 * 10 9 7 12 12 C 1.53040 * 109.30700 * 305.36102 * 11 10 9 13 13 C 1.53042 * 109.53849 * 61.36893 * 12 11 10 14 14 C 1.53004 * 109.49632 * 178.68152 * 13 12 11 15 15 O 1.42901 * 109.46893 * 184.99869 * 14 13 12 16 16 N 1.46498 * 109.49970 * 58.61493 * 13 12 11 17 17 C 1.36935 * 120.00281 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99616 * 0.02562 * 17 16 13 19 19 C 1.38805 * 120.00330 * 179.97438 * 17 16 13 20 20 N 1.31627 * 120.00011 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00316 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47321 * 89.99767 * 21 19 17 23 23 H 1.48497 * 109.47251 * 210.00277 * 21 19 17 24 24 H 1.48500 * 109.46779 * 329.99613 * 21 19 17 25 25 C 1.46928 * 120.62643 * 173.52936 * 9 7 6 26 26 S 1.70950 * 124.80760 * 270.29191 * 3 2 1 27 27 H 1.08994 * 109.47584 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.46984 * 60.00198 * 1 2 3 29 29 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47344 * 240.00158 * 2 1 3 31 31 H 1.09003 * 109.47385 * 120.00161 * 2 1 3 32 32 H 1.07996 * 122.90637 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.58948 * 113.79218 * 10 9 7 34 34 H 1.09004 * 109.58632 * 353.36415 * 10 9 7 35 35 H 1.08995 * 109.49336 * 185.41439 * 11 10 9 36 36 H 1.08996 * 109.49693 * 65.31406 * 11 10 9 37 37 H 1.09004 * 109.45716 * 181.38534 * 12 11 10 38 38 H 1.08999 * 109.46026 * 301.34317 * 12 11 10 39 39 H 1.09004 * 109.46829 * 305.00018 * 14 13 12 40 40 H 1.08999 * 109.47130 * 64.99579 * 14 13 12 41 41 H 0.96698 * 113.99614 * 179.97438 * 15 14 13 42 42 H 0.97008 * 119.99912 * 0.02562 * 16 13 12 43 43 H 0.97002 * 120.00259 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.59114 * 6.62884 * 25 9 7 45 45 H 1.09001 * 109.70239 * 246.27032 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3417 0.8932 6 6 2.8404 3.7106 -0.4058 7 6 3.3007 5.0155 -0.8925 8 8 3.1177 6.0141 -0.2217 9 7 3.9264 5.1083 -2.0826 10 6 4.2804 3.8993 -2.8386 11 6 5.7748 3.9467 -3.1728 12 6 6.0896 5.2566 -3.8988 13 6 5.7613 6.4398 -2.9852 14 6 6.1072 7.7479 -3.6996 15 8 5.9104 8.8452 -2.8056 16 7 6.5424 6.3356 -1.7503 17 6 6.4141 7.2896 -0.7764 18 1 5.7366 8.1186 -0.9185 19 6 7.1538 7.1907 0.3940 20 7 7.9791 6.1800 0.5674 21 14 6.9782 8.4917 1.7228 22 1 5.9003 8.0954 2.6642 23 1 8.2593 8.6196 2.4627 24 1 6.6355 9.7944 1.0978 25 6 4.2669 6.4207 -2.6489 26 16 2.3508 2.3432 -1.4036 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.9435 4.0009 1.7163 33 1 3.7007 3.8622 -3.7609 34 1 4.0687 3.0162 -2.2357 35 1 6.0307 3.1042 -3.8152 36 1 6.3554 3.8923 -2.2520 37 1 7.1477 5.2820 -4.1596 38 1 5.4904 5.3217 -4.8069 39 1 7.1488 7.7224 -4.0200 40 1 5.4622 7.8681 -4.5700 41 1 6.1115 9.7084 -3.1923 42 1 7.1512 5.5912 -1.6228 43 1 8.4964 6.1110 1.3851 44 1 4.0462 7.2012 -1.9209 45 1 3.6861 6.5916 -3.5553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281191787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -12.721719 kcal Electronic energy + Delta-G solvation = -28781.282506 eV Core-core repulsion = 24926.573937 eV Total energy + Delta-G solvation = -3854.708570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14828 -39.42122 -37.63009 -35.75514 -34.18537 -33.78682 -32.27102 -31.14502 -29.86763 -28.54263 -26.45315 -25.45030 -24.95409 -23.46286 -22.92853 -21.78737 -21.19490 -18.88708 -18.43480 -18.12846 -17.26638 -16.45118 -16.17012 -15.91384 -15.44023 -14.94955 -14.76033 -14.44622 -14.25139 -14.05384 -13.87020 -13.70437 -13.46225 -13.32391 -12.94181 -12.80205 -12.52338 -12.28657 -12.07692 -11.97085 -11.65167 -11.57150 -11.43017 -11.28017 -10.86706 -10.69799 -10.60837 -10.52243 -10.17050 -9.77787 -9.69703 -9.50631 -9.42972 -9.12575 -8.95736 -8.82651 -8.74098 -8.09960 -6.77983 -5.52698 -2.78084 0.38853 1.19234 1.60153 2.67890 3.25097 3.62212 3.65695 3.68378 3.70360 4.00438 4.71811 4.73312 4.80153 4.85811 4.93261 4.99701 5.03633 5.18040 5.36027 5.39892 5.43179 5.48118 5.52527 5.60677 5.63514 5.68369 5.74699 5.85975 5.88269 5.90611 5.99944 6.06970 6.16810 6.21265 6.24458 6.34737 6.58315 6.76697 6.84479 7.03607 7.66942 7.83848 8.20858 8.39432 8.61196 8.64942 9.78633 10.25277 10.60856 11.70982 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.004290 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.083160 B = 6524.663415 C = 7674.048897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.035 3.965 4 N -0.475 5.475 5 C 0.111 3.889 6 C -0.271 4.271 7 C 0.595 3.405 8 O -0.507 6.507 9 N -0.587 5.587 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.188 3.812 14 C 0.075 3.925 15 O -0.535 6.535 16 N -0.702 5.702 17 C -0.194 4.194 18 H 0.092 0.908 19 C -0.023 4.023 20 N -0.947 5.947 21 Si 0.902 3.098 22 H -0.293 1.293 23 H -0.298 1.298 24 H -0.283 1.283 25 C 0.111 3.889 26 S 0.167 5.833 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.186 0.814 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.023 0.977 41 H 0.351 0.649 42 H 0.381 0.619 43 H 0.248 0.752 44 H 0.105 0.895 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 -11.843 -11.999 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.240 4.240 4 N -0.189 5.189 5 C -0.045 4.045 6 C -0.394 4.394 7 C 0.380 3.620 8 O -0.383 6.383 9 N -0.319 5.319 10 C -0.025 4.025 11 C -0.167 4.167 12 C -0.153 4.153 13 C 0.094 3.906 14 C -0.006 4.006 15 O -0.337 6.337 16 N -0.342 5.342 17 C -0.325 4.325 18 H 0.110 0.890 19 C -0.217 4.217 20 N -0.598 5.598 21 Si 0.735 3.265 22 H -0.221 1.221 23 H -0.225 1.225 24 H -0.209 1.209 25 C -0.013 4.013 26 S 0.423 5.577 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.203 0.797 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.196 0.804 42 H 0.216 0.784 43 H 0.058 0.942 44 H 0.123 0.877 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.228 -12.103 -11.664 20.786 hybrid contribution 0.766 1.427 1.182 2.005 sum -11.461 -10.676 -10.482 18.847 Atomic orbital electron populations 1.21775 0.93469 1.02512 1.02791 1.20242 0.96691 0.87578 1.04369 1.27624 1.01878 1.02127 0.92358 1.66204 1.15112 1.06124 1.31456 1.22145 0.95379 0.91232 0.95704 1.25899 1.15594 1.00376 0.97575 1.16612 0.78398 0.85949 0.81010 1.90860 1.56573 1.36159 1.54674 1.47553 1.57424 1.07497 1.19451 1.22010 0.96713 0.87712 0.96063 1.21835 0.95409 0.97434 1.02034 1.21634 1.01740 0.94366 0.97591 1.19943 0.91074 0.90961 0.88588 1.22742 0.98004 0.88859 0.91018 1.86980 1.90975 1.15665 1.40129 1.42419 1.48034 1.29387 1.14351 1.19498 1.18136 1.01192 0.93640 0.89037 1.24643 1.00230 0.98403 0.98383 1.69660 1.31161 1.31914 1.27090 0.86227 0.76228 0.81595 0.82487 1.22130 1.22539 1.20897 1.22195 0.96722 0.84347 0.98024 1.83840 1.57926 1.04603 1.11286 0.91868 0.92365 0.91365 0.89565 0.88702 0.79688 0.91535 0.90291 0.91183 0.89931 0.91305 0.91898 0.94325 0.95851 0.80417 0.78391 0.94208 0.87680 0.93356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.05 -0.40 6.51 -27.89 -0.18 -0.58 16 3 C 0.04 0.44 6.64 -13.29 -0.09 0.35 16 4 N -0.47 -7.38 10.51 -11.50 -0.12 -7.50 16 5 C 0.11 1.92 11.20 -18.85 -0.21 1.71 16 6 C -0.27 -4.64 5.80 -37.10 -0.21 -4.86 16 7 C 0.60 12.17 7.60 -12.85 -0.10 12.08 16 8 O -0.51 -12.51 16.41 5.21 0.09 -12.42 16 9 N -0.59 -10.61 2.89 -174.31 -0.50 -11.12 16 10 C 0.10 1.39 5.55 -3.71 -0.02 1.37 16 11 C -0.13 -1.83 5.91 -26.61 -0.16 -1.99 16 12 C -0.12 -1.68 4.76 -26.69 -0.13 -1.81 16 13 C 0.19 3.51 0.68 -131.70 -0.09 3.42 16 14 C 0.07 1.28 6.09 37.16 0.23 1.51 16 15 O -0.53 -10.30 10.04 -35.23 -0.35 -10.65 16 16 N -0.70 -17.04 4.75 -47.12 -0.22 -17.26 16 17 C -0.19 -5.45 8.06 -15.06 -0.12 -5.57 16 18 H 0.09 2.66 5.26 -52.49 -0.28 2.38 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 20 N -0.95 -29.57 13.06 55.49 0.72 -28.84 16 21 Si 0.90 24.56 29.55 -169.99 -5.02 19.53 16 22 H -0.29 -8.19 7.11 56.52 0.40 -7.79 16 23 H -0.30 -8.12 7.11 56.52 0.40 -7.71 16 24 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 25 C 0.11 2.10 4.93 -3.71 -0.02 2.08 16 26 S 0.17 2.02 19.39 -107.50 -2.08 -0.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.19 3.29 8.06 -52.49 -0.42 2.87 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.06 3.91 -25.65 -0.10 0.96 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.35 5.00 9.12 45.56 0.42 5.41 16 42 H 0.38 9.95 6.43 -40.82 -0.26 9.69 16 43 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.10 2.43 5.82 -51.93 -0.30 2.13 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 368.42 15.07 5.55 5.55 Total: -1.00 -36.45 368.42 -8.29 -44.74 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.51 Total: 11.84 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -0.83 Total: 6.21 kcal Atomic # 7 Polarization: -64.59 SS G_CDS: -0.12 Total: -64.72 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.27 Total: -23.08 kcal Atomic # 14 Polarization: 24.56 SS G_CDS: -5.02 Total: 19.53 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.08 Total: -0.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.45 -8.29 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281191787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.014 kcal (2) G-P(sol) polarization free energy of solvation -36.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds