Wall clock time and date at job start Sat Apr 11 2020 05:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47163 * 2 1 4 4 N 1.29429 * 124.80537 * 89.97253 * 3 2 1 5 5 C 1.30939 * 117.36732 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19115 * 0.02562 * 5 4 3 7 7 C 1.46681 * 126.13193 * 179.97438 * 6 5 4 8 8 O 1.21680 * 119.99900 * 331.37937 * 7 6 5 9 9 N 1.34777 * 119.99766 * 151.36857 * 7 6 5 10 10 C 1.46922 * 120.63275 * 353.55867 * 9 7 6 11 11 C 1.53199 * 108.77399 * 233.58465 * 10 9 7 12 12 C 1.53040 * 109.30700 * 305.36102 * 11 10 9 13 13 C 1.53042 * 109.53849 * 61.36893 * 12 11 10 14 14 C 1.53004 * 109.49632 * 178.68152 * 13 12 11 15 15 O 1.42901 * 109.46893 * 184.99869 * 14 13 12 16 16 N 1.46498 * 109.49970 * 58.61493 * 13 12 11 17 17 C 1.36935 * 120.00281 * 179.97438 * 16 13 12 18 18 H 1.07999 * 119.99616 * 0.02562 * 17 16 13 19 19 C 1.38805 * 120.00330 * 179.97438 * 17 16 13 20 20 N 1.31627 * 120.00011 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00316 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47321 * 89.99767 * 21 19 17 23 23 H 1.48497 * 109.47251 * 210.00277 * 21 19 17 24 24 H 1.48500 * 109.46779 * 329.99613 * 21 19 17 25 25 C 1.46928 * 120.62643 * 173.52936 * 9 7 6 26 26 S 1.70950 * 124.80760 * 270.29191 * 3 2 1 27 27 H 1.08994 * 109.47584 * 299.99917 * 1 2 3 28 28 H 1.09004 * 109.46984 * 60.00198 * 1 2 3 29 29 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47344 * 240.00158 * 2 1 3 31 31 H 1.09003 * 109.47385 * 120.00161 * 2 1 3 32 32 H 1.07996 * 122.90637 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.58948 * 113.79218 * 10 9 7 34 34 H 1.09004 * 109.58632 * 353.36415 * 10 9 7 35 35 H 1.08995 * 109.49336 * 185.41439 * 11 10 9 36 36 H 1.08996 * 109.49693 * 65.31406 * 11 10 9 37 37 H 1.09004 * 109.45716 * 181.38534 * 12 11 10 38 38 H 1.08999 * 109.46026 * 301.34317 * 12 11 10 39 39 H 1.09004 * 109.46829 * 305.00018 * 14 13 12 40 40 H 1.08999 * 109.47130 * 64.99579 * 14 13 12 41 41 H 0.96698 * 113.99614 * 179.97438 * 15 14 13 42 42 H 0.97008 * 119.99912 * 0.02562 * 16 13 12 43 43 H 0.97002 * 120.00259 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.59114 * 6.62884 * 25 9 7 45 45 H 1.09001 * 109.70239 * 246.27032 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1175 1.0627 5 6 2.7105 3.3417 0.8932 6 6 2.8404 3.7106 -0.4058 7 6 3.3007 5.0155 -0.8925 8 8 3.1177 6.0141 -0.2217 9 7 3.9264 5.1083 -2.0826 10 6 4.2804 3.8993 -2.8386 11 6 5.7748 3.9467 -3.1728 12 6 6.0896 5.2566 -3.8988 13 6 5.7613 6.4398 -2.9852 14 6 6.1072 7.7479 -3.6996 15 8 5.9104 8.8452 -2.8056 16 7 6.5424 6.3356 -1.7503 17 6 6.4141 7.2896 -0.7764 18 1 5.7366 8.1186 -0.9185 19 6 7.1538 7.1907 0.3940 20 7 7.9791 6.1800 0.5674 21 14 6.9782 8.4917 1.7228 22 1 5.9003 8.0954 2.6642 23 1 8.2593 8.6196 2.4627 24 1 6.6355 9.7944 1.0978 25 6 4.2669 6.4207 -2.6489 26 16 2.3508 2.3432 -1.4036 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.9435 4.0009 1.7163 33 1 3.7007 3.8622 -3.7609 34 1 4.0687 3.0162 -2.2357 35 1 6.0307 3.1042 -3.8152 36 1 6.3554 3.8923 -2.2520 37 1 7.1477 5.2820 -4.1596 38 1 5.4904 5.3217 -4.8069 39 1 7.1488 7.7224 -4.0200 40 1 5.4622 7.8681 -4.5700 41 1 6.1115 9.7084 -3.1923 42 1 7.1512 5.5912 -1.6228 43 1 8.4964 6.1110 1.3851 44 1 4.0462 7.2012 -1.9209 45 1 3.6861 6.5916 -3.5553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281191787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:21 Heat of formation + Delta-G solvation = -42.235347 kcal Electronic energy + Delta-G solvation = -28782.562313 eV Core-core repulsion = 24926.573937 eV Total energy + Delta-G solvation = -3855.988377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51532 -40.66882 -39.14903 -37.18752 -35.60221 -34.93963 -33.99081 -32.62219 -31.18170 -30.29762 -27.61233 -26.71267 -26.18776 -25.53906 -23.84186 -23.06956 -22.43454 -20.29969 -19.61387 -19.55441 -19.07922 -17.78132 -17.72666 -17.32151 -16.84628 -16.36431 -16.00907 -15.83820 -15.67487 -15.46935 -15.06540 -15.00253 -14.82808 -14.67981 -14.47916 -14.08215 -13.79229 -13.59099 -13.30985 -13.16761 -12.92470 -12.81694 -12.75525 -12.62773 -12.56172 -12.07807 -12.06992 -12.03986 -11.86653 -11.35715 -11.32692 -11.16521 -10.84994 -10.70621 -10.54881 -10.32470 -9.86726 -9.57820 -8.80919 -7.81140 -5.01312 -0.77914 0.08517 0.48141 1.37536 1.41476 1.43911 1.48378 1.84877 2.24826 2.63826 3.02501 3.38302 3.55267 3.68370 3.86371 3.87839 3.89740 4.06561 4.13125 4.21303 4.27605 4.31309 4.32162 4.46539 4.54666 4.62625 4.67709 4.73819 4.81435 4.89270 4.96914 4.98788 5.00790 5.03704 5.09282 5.16698 5.34954 5.42796 5.48656 5.62934 5.93312 6.36296 6.44419 6.58043 7.12518 7.19043 7.53053 8.22206 8.43570 9.43489 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.004290 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.083160 B = 6524.663415 C = 7674.048897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C 0.039 3.961 4 N -0.504 5.504 5 C 0.100 3.900 6 C -0.315 4.315 7 C 0.583 3.417 8 O -0.573 6.573 9 N -0.586 5.586 10 C 0.093 3.907 11 C -0.126 4.126 12 C -0.109 4.109 13 C 0.173 3.827 14 C 0.074 3.926 15 O -0.572 6.572 16 N -0.711 5.711 17 C -0.157 4.157 18 H 0.082 0.918 19 C -0.092 4.092 20 N -0.980 5.980 21 Si 0.943 3.057 22 H -0.312 1.312 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.114 3.886 26 S 0.267 5.733 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.120 0.880 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.035 0.965 37 H 0.070 0.930 38 H 0.109 0.891 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.373 0.627 42 H 0.370 0.630 43 H 0.238 0.762 44 H 0.053 0.947 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 -14.423 -16.482 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.092 4.092 3 C -0.235 4.235 4 N -0.219 5.219 5 C -0.058 4.058 6 C -0.439 4.439 7 C 0.370 3.630 8 O -0.454 6.454 9 N -0.317 5.317 10 C -0.030 4.030 11 C -0.164 4.164 12 C -0.146 4.146 13 C 0.082 3.918 14 C -0.006 4.006 15 O -0.378 6.378 16 N -0.349 5.349 17 C -0.290 4.290 18 H 0.100 0.900 19 C -0.282 4.282 20 N -0.635 5.635 21 Si 0.777 3.223 22 H -0.241 1.241 23 H -0.225 1.225 24 H -0.199 1.199 25 C -0.010 4.010 26 S 0.525 5.475 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.054 0.946 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.203 0.797 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.713 -14.680 -16.263 25.847 hybrid contribution 1.083 2.143 2.389 3.387 sum -12.630 -12.537 -13.874 22.565 Atomic orbital electron populations 1.21791 0.92298 1.04084 1.02177 1.20566 0.97505 0.84880 1.06214 1.28521 0.99254 1.03533 0.92224 1.66247 1.16897 1.05572 1.33137 1.21956 0.96106 0.92101 0.95594 1.25710 1.17663 1.01560 0.99007 1.17156 0.78138 0.86471 0.81200 1.90805 1.59301 1.38655 1.56605 1.47742 1.56183 1.08763 1.18991 1.22402 0.97379 0.85894 0.97319 1.21833 0.94656 0.99143 1.00792 1.21659 1.02826 0.92148 0.98015 1.20478 0.89930 0.94146 0.87264 1.22724 0.99043 0.87235 0.91553 1.86875 1.91230 1.17489 1.42181 1.42561 1.48565 1.27998 1.15807 1.19616 1.14968 1.00683 0.93751 0.90001 1.25164 1.02074 1.00421 1.00518 1.69767 1.33075 1.33603 1.27074 0.85520 0.75369 0.80666 0.80758 1.24126 1.22497 1.19863 1.22089 0.97266 0.83648 0.98023 1.83195 1.55603 1.00279 1.08374 0.93757 0.91756 0.88737 0.86164 0.88419 0.82356 0.86789 0.90039 0.86675 0.94613 0.91123 0.87277 0.94319 0.91260 0.77930 0.79722 0.95311 0.92818 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.89 71.98 0.71 -0.90 16 2 C -0.05 -0.68 6.51 29.85 0.19 -0.48 16 3 C 0.04 0.88 6.64 88.46 0.59 1.47 16 4 N -0.50 -15.86 10.51 -190.31 -2.00 -17.86 16 5 C 0.10 3.68 11.20 84.23 0.94 4.62 16 6 C -0.32 -11.05 5.80 23.88 0.14 -10.91 16 7 C 0.58 24.79 7.60 86.45 0.66 25.45 16 8 O -0.57 -30.53 16.41 -4.29 -0.07 -30.60 16 9 N -0.59 -20.64 2.89 -823.63 -2.38 -23.02 16 10 C 0.09 2.24 5.55 86.37 0.48 2.72 16 11 C -0.13 -3.14 5.91 30.67 0.18 -2.96 16 12 C -0.11 -2.72 4.76 30.62 0.15 -2.57 16 13 C 0.17 6.15 0.68 3.68 0.00 6.15 16 14 C 0.07 2.35 6.09 71.98 0.44 2.79 16 15 O -0.57 -21.60 10.04 -148.98 -1.50 -23.09 16 16 N -0.71 -35.08 4.75 -303.00 -1.44 -36.52 16 17 C -0.16 -9.18 8.06 84.03 0.68 -8.51 16 18 H 0.08 4.94 5.26 -2.91 -0.02 4.93 16 19 C -0.09 -5.81 5.50 84.86 0.47 -5.34 16 20 N -0.98 -64.13 13.06 21.65 0.28 -63.84 16 21 Si 0.94 53.02 29.55 68.60 2.03 55.05 16 22 H -0.31 -18.23 7.11 99.48 0.71 -17.53 16 23 H -0.30 -16.52 7.11 99.48 0.71 -15.81 16 24 H -0.27 -14.65 7.11 99.48 0.71 -13.95 16 25 C 0.11 4.15 4.93 86.36 0.43 4.58 16 26 S 0.27 5.67 19.39 -56.49 -1.10 4.58 16 27 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.16 6.43 8.06 -2.91 -0.02 6.41 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.92 3.91 -19.09 -0.07 1.84 16 35 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.03 1.25 6.75 -2.39 -0.02 1.23 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.37 10.19 9.12 -74.06 -0.68 9.51 16 42 H 0.37 19.85 6.43 -92.70 -0.60 19.26 16 43 H 0.24 15.48 8.31 -92.71 -0.77 14.70 16 44 H 0.05 2.55 5.82 -2.39 -0.01 2.54 16 45 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -89.21 368.42 -0.42 -89.62 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.30 Total: 29.59 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.05 Total: 16.10 kcal Atomic # 7 Polarization: -135.71 SS G_CDS: -5.54 Total: -141.24 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -1.57 Total: -53.69 kcal Atomic # 14 Polarization: 53.02 SS G_CDS: 2.03 Total: 55.05 kcal Atomic # 16 Polarization: 5.67 SS G_CDS: -1.10 Total: 4.58 kcal Total: -89.21 -0.42 -89.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281191787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.389 kcal (2) G-P(sol) polarization free energy of solvation -89.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds