Wall clock time and date at job start Sat Apr 11 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47177 * 2 1 4 4 N 1.29436 * 124.80088 * 89.97217 * 3 2 1 5 5 C 1.30943 * 117.36077 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19338 * 0.02562 * 5 4 3 7 7 C 1.46680 * 126.12894 * 180.02562 * 6 5 4 8 8 O 1.21685 * 120.00584 * 44.60659 * 7 6 5 9 9 N 1.34783 * 119.99522 * 224.60512 * 7 6 5 10 10 C 1.46923 * 120.63335 * 356.01678 * 9 7 6 11 11 C 1.53622 * 108.53923 * 126.36848 * 10 9 7 12 12 C 1.53033 * 109.24456 * 54.86085 * 11 10 9 13 13 C 1.53044 * 109.53478 * 298.50983 * 12 11 10 14 14 C 1.53007 * 109.52032 * 181.33107 * 13 12 11 15 15 O 1.42902 * 109.46629 * 180.14393 * 14 13 12 16 16 N 1.46500 * 109.49777 * 301.40908 * 13 12 11 17 17 C 1.36936 * 120.00139 * 179.84091 * 16 13 12 18 18 H 1.08002 * 119.99641 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00178 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46751 * 60.00279 * 21 19 17 23 23 H 1.48502 * 109.47280 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47214 * 300.00454 * 21 19 17 25 25 C 1.46933 * 120.62690 * 176.30140 * 9 7 6 26 26 S 1.70948 * 124.80848 * 270.29072 * 3 2 1 27 27 H 1.08996 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47121 * 300.00440 * 1 2 3 29 29 H 1.09002 * 109.46778 * 59.99732 * 1 2 3 30 30 H 1.09000 * 109.47242 * 240.00331 * 2 1 3 31 31 H 1.09000 * 109.46967 * 119.99758 * 2 1 3 32 32 H 1.08003 * 122.90122 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.58610 * 246.20462 * 10 9 7 34 34 H 1.09001 * 109.58733 * 6.63241 * 10 9 7 35 35 H 1.08997 * 109.63918 * 294.86494 * 11 10 9 36 36 H 1.09004 * 109.45751 * 174.74046 * 11 10 9 37 37 H 1.09000 * 109.46403 * 178.48875 * 12 11 10 38 38 H 1.08996 * 109.46405 * 58.52573 * 12 11 10 39 39 H 1.08995 * 109.47515 * 300.14285 * 14 13 12 40 40 H 1.08998 * 109.47280 * 60.14944 * 14 13 12 41 41 H 0.96704 * 113.99596 * 180.02562 * 15 14 13 42 42 H 0.97000 * 119.99597 * 359.84070 * 16 13 12 43 43 H 0.96992 * 120.00408 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58381 * 353.36858 * 25 9 7 45 45 H 1.08990 * 109.58599 * 113.65521 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0628 5 6 2.7106 3.3418 0.8933 6 6 2.8405 3.7106 -0.4058 7 6 3.3018 5.0152 -0.8924 8 8 4.2740 5.5442 -0.3868 9 7 2.6487 5.6280 -1.8997 10 6 1.5274 4.9640 -2.5783 11 6 0.3120 5.9031 -2.5464 12 6 0.7019 7.2534 -3.1519 13 6 1.8197 7.8844 -2.3185 14 6 2.1864 9.2493 -2.9048 15 8 3.2325 9.8359 -2.1277 16 7 1.3639 8.0524 -0.9364 17 6 2.2014 8.5984 -0.0007 18 1 3.1982 8.9048 -0.2816 19 6 1.7697 8.7571 1.3089 20 7 0.5550 8.3832 1.6513 21 14 2.9124 9.5013 2.5855 22 1 3.2970 10.8730 2.1658 23 1 2.2176 9.5619 3.8965 24 1 4.1309 8.6615 2.7087 25 6 3.0486 6.9702 -2.3441 26 16 2.3510 2.3432 -1.4036 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9428 4.0012 1.7165 33 1 1.8005 4.7503 -3.6116 34 1 1.2864 4.0347 -2.0621 35 1 -0.0130 6.0468 -1.5160 36 1 -0.5004 5.4654 -3.1265 37 1 -0.1652 7.9138 -3.1557 38 1 1.0503 7.1060 -4.1742 39 1 2.5245 9.1240 -3.9334 40 1 1.3118 9.8995 -2.8863 41 1 3.5161 10.7052 -2.4425 42 1 0.4687 7.7768 -0.6841 43 1 0.2534 8.4938 2.5665 44 1 3.8117 7.3648 -1.6732 45 1 3.4456 6.9162 -3.3577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281191791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:24 Heat of formation + Delta-G solvation = -15.369636 kcal Electronic energy + Delta-G solvation = -28900.804584 eV Core-core repulsion = 25045.981192 eV Total energy + Delta-G solvation = -3854.823392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.14637 -39.37802 -37.64600 -35.75714 -34.15523 -33.80554 -32.27691 -31.11963 -29.86502 -28.53980 -26.41773 -25.43475 -24.93321 -23.49035 -22.91294 -21.78395 -21.16242 -18.89378 -18.35181 -18.13904 -17.25934 -16.53230 -16.20612 -16.00260 -15.27579 -14.91581 -14.70457 -14.47308 -14.27923 -14.03114 -13.91115 -13.68819 -13.46356 -13.30016 -12.99482 -12.67731 -12.51856 -12.29450 -12.08704 -11.91660 -11.65727 -11.50474 -11.38533 -11.26983 -10.87388 -10.69782 -10.63455 -10.51248 -10.19522 -9.80612 -9.73753 -9.56353 -9.46809 -9.10772 -8.98597 -8.82115 -8.73973 -8.10773 -6.81270 -5.56253 -2.82413 0.45712 1.18583 1.59803 2.74817 3.19435 3.60599 3.63522 3.64659 3.69091 4.03156 4.73206 4.75101 4.78702 4.85738 4.97272 5.03771 5.05734 5.17658 5.39788 5.41404 5.43218 5.52963 5.56986 5.60737 5.65993 5.72379 5.75761 5.85206 5.87707 5.95273 6.00808 6.07225 6.16350 6.23716 6.26485 6.35173 6.58977 6.76692 6.85519 7.03556 7.69785 7.83924 8.16290 8.36696 8.59676 8.61500 9.75084 10.22437 10.58147 11.67120 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.004564 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.280892 B = 6133.284568 C = 7204.615323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.047 4.047 3 C 0.040 3.960 4 N -0.471 5.471 5 C 0.109 3.891 6 C -0.265 4.265 7 C 0.599 3.401 8 O -0.513 6.513 9 N -0.584 5.584 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.188 3.812 14 C 0.076 3.924 15 O -0.540 6.540 16 N -0.703 5.703 17 C -0.202 4.202 18 H 0.091 0.909 19 C -0.021 4.021 20 N -0.946 5.946 21 Si 0.901 3.099 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.286 1.286 25 C 0.113 3.887 26 S 0.157 5.843 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.186 0.814 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.040 0.960 41 H 0.354 0.646 42 H 0.382 0.618 43 H 0.250 0.750 44 H 0.106 0.894 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -13.971 -13.510 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.236 4.236 4 N -0.185 5.185 5 C -0.046 4.046 6 C -0.389 4.389 7 C 0.384 3.616 8 O -0.390 6.390 9 N -0.316 5.316 10 C -0.026 4.026 11 C -0.167 4.167 12 C -0.153 4.153 13 C 0.095 3.905 14 C -0.005 4.005 15 O -0.343 6.343 16 N -0.343 5.343 17 C -0.333 4.333 18 H 0.109 0.891 19 C -0.215 4.215 20 N -0.596 5.596 21 Si 0.733 3.267 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.213 1.213 25 C -0.011 4.011 26 S 0.413 5.587 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.113 0.887 32 H 0.203 0.797 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.199 0.801 42 H 0.216 0.784 43 H 0.059 0.941 44 H 0.124 0.876 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.859 -14.636 -13.333 19.817 hybrid contribution 0.374 1.568 1.307 2.075 sum -0.486 -13.068 -12.026 17.766 Atomic orbital electron populations 1.21785 0.93323 1.02508 1.03024 1.20240 0.96847 0.87458 1.04222 1.27517 1.02406 1.01922 0.91743 1.66182 1.14990 1.06084 1.31250 1.22119 0.95749 0.91143 0.95585 1.25830 1.14946 1.00509 0.97610 1.16611 0.83082 0.82393 0.79559 1.90843 1.26367 1.65199 1.56557 1.47605 1.32252 1.17775 1.33954 1.22093 0.87329 0.96150 0.96995 1.21908 0.96480 0.95158 1.03190 1.21627 0.98896 0.96571 0.98244 1.19948 0.91882 0.90943 0.87775 1.22742 0.89975 0.95995 0.91750 1.86880 1.55191 1.35918 1.56291 1.42416 1.15862 1.73539 1.02478 1.19477 0.96337 1.29365 0.88156 0.89128 1.24653 0.96560 1.02925 0.97343 1.69646 1.17141 1.55040 1.17811 0.86327 0.80240 0.79057 0.81037 1.21624 1.22306 1.21332 1.22187 0.99807 0.80670 0.98470 1.83744 1.59163 1.03959 1.11824 0.91396 0.91698 0.92264 0.89675 0.88728 0.79717 0.91516 0.90310 0.89968 0.91303 0.91337 0.91898 0.95804 0.94135 0.80110 0.78351 0.94064 0.87615 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.90 37.16 0.37 -0.79 16 2 C -0.05 -0.41 6.51 -27.88 -0.18 -0.59 16 3 C 0.04 0.50 6.64 -13.29 -0.09 0.42 16 4 N -0.47 -7.55 10.51 -11.50 -0.12 -7.67 16 5 C 0.11 1.95 11.30 -18.85 -0.21 1.74 16 6 C -0.27 -4.65 5.53 -37.10 -0.21 -4.86 16 7 C 0.60 12.34 7.57 -12.85 -0.10 12.24 16 8 O -0.51 -12.66 16.52 5.20 0.09 -12.57 16 9 N -0.58 -10.64 2.88 -174.05 -0.50 -11.15 16 10 C 0.10 1.39 5.95 -3.49 -0.02 1.37 16 11 C -0.13 -1.84 5.93 -26.39 -0.16 -2.00 16 12 C -0.12 -1.69 4.76 -26.69 -0.13 -1.81 16 13 C 0.19 3.51 0.68 -131.70 -0.09 3.42 16 14 C 0.08 1.31 6.08 37.16 0.23 1.53 16 15 O -0.54 -10.25 10.11 -35.23 -0.36 -10.60 16 16 N -0.70 -16.92 4.75 -47.12 -0.22 -17.14 16 17 C -0.20 -5.65 8.21 -15.06 -0.12 -5.77 16 18 H 0.09 2.61 5.28 -52.49 -0.28 2.33 16 19 C -0.02 -0.63 5.50 -17.43 -0.10 -0.72 16 20 N -0.95 -29.18 13.06 55.49 0.72 -28.46 16 21 Si 0.90 24.26 29.55 -169.99 -5.02 19.24 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 24 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 25 C 0.11 2.14 4.84 -3.71 -0.02 2.13 16 26 S 0.16 1.95 19.98 -107.50 -2.15 -0.20 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.19 3.48 8.06 -52.48 -0.42 3.06 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.07 3.95 -29.82 -0.12 0.95 16 35 H 0.08 1.47 6.75 -51.93 -0.35 1.12 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.35 4.94 9.12 45.56 0.42 5.35 16 42 H 0.38 9.88 6.43 -40.82 -0.26 9.62 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.11 2.47 5.71 -51.93 -0.30 2.17 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -35.95 369.38 -8.34 -44.29 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.52 Total: 12.39 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.82 Total: 6.31 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.12 Total: -64.42 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.27 Total: -23.18 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.02 Total: 19.24 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.15 Total: -0.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.95 -8.34 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281191791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.921 kcal (2) G-P(sol) polarization free energy of solvation -35.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds