Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.47177 * 2 1 4 4 N 1.29436 * 124.80088 * 89.97217 * 3 2 1 5 5 C 1.30943 * 117.36077 * 180.02562 * 4 3 2 6 6 C 1.35665 * 114.19338 * 0.02562 * 5 4 3 7 7 C 1.46680 * 126.12894 * 180.02562 * 6 5 4 8 8 O 1.21685 * 120.00584 * 44.60659 * 7 6 5 9 9 N 1.34783 * 119.99522 * 224.60512 * 7 6 5 10 10 C 1.46923 * 120.63335 * 356.01678 * 9 7 6 11 11 C 1.53622 * 108.53923 * 126.36848 * 10 9 7 12 12 C 1.53033 * 109.24456 * 54.86085 * 11 10 9 13 13 C 1.53044 * 109.53478 * 298.50983 * 12 11 10 14 14 C 1.53007 * 109.52032 * 181.33107 * 13 12 11 15 15 O 1.42902 * 109.46629 * 180.14393 * 14 13 12 16 16 N 1.46500 * 109.49777 * 301.40908 * 13 12 11 17 17 C 1.36936 * 120.00139 * 179.84091 * 16 13 12 18 18 H 1.08002 * 119.99641 * 359.97438 * 17 16 13 19 19 C 1.38811 * 120.00178 * 180.02562 * 17 16 13 20 20 N 1.31624 * 119.99996 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00223 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46751 * 60.00279 * 21 19 17 23 23 H 1.48502 * 109.47280 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47214 * 300.00454 * 21 19 17 25 25 C 1.46933 * 120.62690 * 176.30140 * 9 7 6 26 26 S 1.70948 * 124.80848 * 270.29072 * 3 2 1 27 27 H 1.08996 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47121 * 300.00440 * 1 2 3 29 29 H 1.09002 * 109.46778 * 59.99732 * 1 2 3 30 30 H 1.09000 * 109.47242 * 240.00331 * 2 1 3 31 31 H 1.09000 * 109.46967 * 119.99758 * 2 1 3 32 32 H 1.08003 * 122.90122 * 179.97438 * 5 4 3 33 33 H 1.08993 * 109.58610 * 246.20462 * 10 9 7 34 34 H 1.09001 * 109.58733 * 6.63241 * 10 9 7 35 35 H 1.08997 * 109.63918 * 294.86494 * 11 10 9 36 36 H 1.09004 * 109.45751 * 174.74046 * 11 10 9 37 37 H 1.09000 * 109.46403 * 178.48875 * 12 11 10 38 38 H 1.08996 * 109.46405 * 58.52573 * 12 11 10 39 39 H 1.08995 * 109.47515 * 300.14285 * 14 13 12 40 40 H 1.08998 * 109.47280 * 60.14944 * 14 13 12 41 41 H 0.96704 * 113.99596 * 180.02562 * 15 14 13 42 42 H 0.97000 * 119.99597 * 359.84070 * 16 13 12 43 43 H 0.96992 * 120.00408 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58381 * 353.36858 * 25 9 7 45 45 H 1.08990 * 109.58599 * 113.65521 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2782 2.1175 1.0628 5 6 2.7106 3.3418 0.8933 6 6 2.8405 3.7106 -0.4058 7 6 3.3018 5.0152 -0.8924 8 8 4.2740 5.5442 -0.3868 9 7 2.6487 5.6280 -1.8997 10 6 1.5274 4.9640 -2.5783 11 6 0.3120 5.9031 -2.5464 12 6 0.7019 7.2534 -3.1519 13 6 1.8197 7.8844 -2.3185 14 6 2.1864 9.2493 -2.9048 15 8 3.2325 9.8359 -2.1277 16 7 1.3639 8.0524 -0.9364 17 6 2.2014 8.5984 -0.0007 18 1 3.1982 8.9048 -0.2816 19 6 1.7697 8.7571 1.3089 20 7 0.5550 8.3832 1.6513 21 14 2.9124 9.5013 2.5855 22 1 3.2970 10.8730 2.1658 23 1 2.2176 9.5619 3.8965 24 1 4.1309 8.6615 2.7087 25 6 3.0486 6.9702 -2.3441 26 16 2.3510 2.3432 -1.4036 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.9428 4.0012 1.7165 33 1 1.8005 4.7503 -3.6116 34 1 1.2864 4.0347 -2.0621 35 1 -0.0130 6.0468 -1.5160 36 1 -0.5004 5.4654 -3.1265 37 1 -0.1652 7.9138 -3.1557 38 1 1.0503 7.1060 -4.1742 39 1 2.5245 9.1240 -3.9334 40 1 1.3118 9.8995 -2.8863 41 1 3.5161 10.7052 -2.4425 42 1 0.4687 7.7768 -0.6841 43 1 0.2534 8.4938 2.5665 44 1 3.8117 7.3648 -1.6732 45 1 3.4456 6.9162 -3.3577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281191791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -44.283628 kcal Electronic energy + Delta-G solvation = -28902.058389 eV Core-core repulsion = 25045.981192 eV Total energy + Delta-G solvation = -3856.077197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53480 -40.65475 -39.17564 -37.18545 -35.62186 -34.94579 -33.99734 -32.60379 -31.20591 -30.28903 -27.60796 -26.70173 -26.19552 -25.55594 -23.86526 -23.07597 -22.41937 -20.30618 -19.61808 -19.53263 -19.07033 -17.85231 -17.79277 -17.42670 -16.78358 -16.27433 -16.05560 -15.76411 -15.67404 -15.58774 -15.13788 -14.93597 -14.86665 -14.66194 -14.48535 -14.04496 -13.76453 -13.60468 -13.33394 -13.17982 -12.90223 -12.78700 -12.77259 -12.61824 -12.55104 -12.13393 -12.09638 -12.01100 -11.87724 -11.42513 -11.34332 -11.21426 -10.86398 -10.73601 -10.56055 -10.32991 -9.88340 -9.59711 -8.83172 -7.83288 -5.04195 -0.73482 0.03900 0.44979 1.37807 1.42648 1.43828 1.47672 1.75015 2.23911 2.61892 3.02060 3.37344 3.53838 3.66659 3.86909 3.87241 3.88166 4.05452 4.14248 4.21148 4.27241 4.31535 4.32420 4.47862 4.55041 4.61467 4.67308 4.73757 4.81443 4.88987 4.96615 4.98527 5.01123 5.03281 5.09884 5.16991 5.36749 5.41886 5.48281 5.61095 5.89664 6.34971 6.42423 6.57065 7.08911 7.17329 7.50635 8.20477 8.42399 9.40838 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.004564 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.280892 B = 6133.284568 C = 7204.615323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.049 4.049 3 C 0.044 3.956 4 N -0.501 5.501 5 C 0.094 3.906 6 C -0.308 4.308 7 C 0.587 3.413 8 O -0.576 6.576 9 N -0.583 5.583 10 C 0.092 3.908 11 C -0.126 4.126 12 C -0.109 4.109 13 C 0.174 3.826 14 C 0.077 3.923 15 O -0.575 6.575 16 N -0.710 5.710 17 C -0.170 4.170 18 H 0.081 0.919 19 C -0.088 4.088 20 N -0.977 5.977 21 Si 0.944 3.056 22 H -0.279 1.279 23 H -0.299 1.299 24 H -0.303 1.303 25 C 0.116 3.884 26 S 0.259 5.741 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.376 0.624 42 H 0.371 0.629 43 H 0.240 0.760 44 H 0.053 0.947 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.396 -16.322 -18.006 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.231 4.231 4 N -0.216 5.216 5 C -0.062 4.062 6 C -0.432 4.432 7 C 0.373 3.627 8 O -0.457 6.457 9 N -0.313 5.313 10 C -0.030 4.030 11 C -0.164 4.164 12 C -0.146 4.146 13 C 0.083 3.917 14 C -0.003 4.003 15 O -0.381 6.381 16 N -0.350 5.350 17 C -0.302 4.302 18 H 0.099 0.901 19 C -0.277 4.277 20 N -0.632 5.632 21 Si 0.777 3.223 22 H -0.205 1.205 23 H -0.226 1.226 24 H -0.231 1.231 25 C -0.008 4.008 26 S 0.516 5.484 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.171 0.829 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.223 0.777 42 H 0.204 0.796 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.972 -16.976 -17.935 24.774 hybrid contribution 0.738 2.185 2.508 3.407 sum -1.234 -14.792 -15.426 21.408 Atomic orbital electron populations 1.21805 0.92394 1.04092 1.02210 1.20567 0.97434 0.84737 1.06251 1.28422 0.99800 1.03284 0.91583 1.66210 1.16816 1.05496 1.33030 1.21859 0.96865 0.92055 0.95406 1.25664 1.16941 1.01630 0.98937 1.17129 0.82626 0.83409 0.79505 1.90788 1.29206 1.67104 1.58638 1.47791 1.32711 1.17445 1.33352 1.22484 0.85835 0.95853 0.98859 1.21898 0.97744 0.95516 1.01260 1.21652 0.97333 0.96194 0.99468 1.20466 0.93359 0.92318 0.85604 1.22710 0.89684 0.94453 0.93501 1.86794 1.55811 1.37632 1.57855 1.42546 1.14805 1.73051 1.04554 1.19591 0.95858 1.26112 0.88667 0.90139 1.25170 0.97811 1.05644 0.99118 1.69755 1.18355 1.57840 1.17215 0.85608 0.78306 0.78712 0.79672 1.20506 1.22592 1.23067 1.22067 0.98638 0.81038 0.99080 1.83131 1.56841 0.99581 1.08831 0.88661 0.93997 0.91624 0.86088 0.88263 0.82857 0.86908 0.90013 0.94550 0.86884 0.91077 0.87384 0.91148 0.94483 0.77652 0.79649 0.95138 0.92791 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.90 71.98 0.71 -1.11 16 2 C -0.05 -0.68 6.51 29.85 0.19 -0.49 16 3 C 0.04 1.03 6.64 88.46 0.59 1.62 16 4 N -0.50 -16.39 10.51 -190.29 -2.00 -18.39 16 5 C 0.09 3.64 11.30 84.23 0.95 4.59 16 6 C -0.31 -11.07 5.53 23.88 0.13 -10.94 16 7 C 0.59 25.14 7.57 86.45 0.65 25.79 16 8 O -0.58 -30.59 16.52 -4.30 -0.07 -30.66 16 9 N -0.58 -20.79 2.88 -822.79 -2.37 -23.16 16 10 C 0.09 2.27 5.95 86.51 0.51 2.79 16 11 C -0.13 -3.18 5.93 30.81 0.18 -3.00 16 12 C -0.11 -2.75 4.76 30.62 0.15 -2.60 16 13 C 0.17 6.21 0.68 3.68 0.00 6.21 16 14 C 0.08 2.43 6.08 71.98 0.44 2.87 16 15 O -0.57 -21.45 10.11 -148.98 -1.51 -22.95 16 16 N -0.71 -34.89 4.75 -302.99 -1.44 -36.32 16 17 C -0.17 -9.83 8.21 84.03 0.69 -9.14 16 18 H 0.08 4.84 5.28 -2.91 -0.02 4.82 16 19 C -0.09 -5.44 5.50 84.86 0.47 -4.98 16 20 N -0.98 -63.23 13.06 21.65 0.28 -62.95 16 21 Si 0.94 52.45 29.55 68.60 2.03 54.48 16 22 H -0.28 -14.74 7.11 99.48 0.71 -14.03 16 23 H -0.30 -16.59 7.11 99.48 0.71 -15.88 16 24 H -0.30 -17.37 7.11 99.48 0.71 -16.66 16 25 C 0.12 4.29 4.84 86.36 0.42 4.70 16 26 S 0.26 5.70 19.98 -56.49 -1.13 4.57 16 27 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.15 6.62 8.06 -2.91 -0.02 6.59 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.83 16 34 H 0.08 1.95 3.95 -16.45 -0.06 1.89 16 35 H 0.04 1.27 6.75 -2.39 -0.02 1.26 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.38 10.07 9.12 -74.05 -0.68 9.40 16 42 H 0.37 19.76 6.43 -92.71 -0.60 19.16 16 43 H 0.24 15.43 8.31 -92.71 -0.77 14.66 16 44 H 0.05 2.60 5.71 -2.39 -0.01 2.58 16 45 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -87.93 369.38 -0.40 -88.34 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.29 Total: 30.73 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.09 Total: 16.32 kcal Atomic # 7 Polarization: -135.30 SS G_CDS: -5.53 Total: -140.83 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -1.58 Total: -53.61 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 2.03 Total: 54.48 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.13 Total: 4.57 kcal Total: -87.93 -0.40 -88.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281191791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.053 kcal (2) G-P(sol) polarization free energy of solvation -87.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds