Wall clock time and date at job start Sat Apr 11 2020 05:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 S 1.77235 * 127.33972 * 2 1 4 4 C 1.72212 * 94.84765 * 179.80838 * 3 2 1 5 5 O 1.21824 * 127.05950 * 180.19711 * 4 3 2 6 6 N 1.34251 * 105.88427 * 0.31924 * 4 3 2 7 7 C 1.46491 * 121.37991 * 179.87981 * 6 4 3 8 8 C 1.50704 * 109.47078 * 269.72099 * 7 6 4 9 9 O 1.21276 * 120.00082 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99697 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99698 * 180.02562 * 10 8 7 12 12 H 1.09005 * 109.47204 * 324.99663 * 11 10 8 13 13 C 1.52994 * 109.47478 * 85.00105 * 11 10 8 14 14 C 1.53007 * 109.47063 * 205.00339 * 11 10 8 15 15 C 1.53943 * 113.73967 * 161.99682 * 14 11 10 16 16 N 1.47812 * 86.03288 * 222.07840 * 15 14 11 17 17 C 1.36941 * 134.45949 * 204.64456 * 16 15 14 18 18 H 1.07998 * 120.00363 * 179.86974 * 17 16 15 19 19 C 1.38817 * 119.99599 * 359.86590 * 17 16 15 20 20 N 1.31619 * 119.99967 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99796 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47082 * 60.00555 * 21 19 17 23 23 H 1.48504 * 109.47126 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47369 * 300.00365 * 21 19 17 25 25 C 1.47584 * 91.05227 * 24.55205 * 16 15 14 26 26 C 1.32567 * 127.34253 * 179.97438 * 2 1 3 27 27 C 1.50704 * 121.64537 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47662 * 270.00041 * 1 2 3 29 29 H 1.09000 * 109.47872 * 30.00463 * 1 2 3 30 30 H 1.09007 * 109.47165 * 150.00275 * 1 2 3 31 31 H 1.08997 * 109.47061 * 149.71955 * 7 6 4 32 32 H 1.08996 * 109.47125 * 29.72003 * 7 6 4 33 33 H 0.96998 * 120.00689 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47358 * 55.80638 * 13 11 10 35 35 H 1.09001 * 109.46924 * 295.80963 * 13 11 10 36 36 H 1.08997 * 109.47324 * 175.80826 * 13 11 10 37 37 H 1.09000 * 112.94115 * 293.58427 * 14 11 10 38 38 H 1.08997 * 113.77139 * 336.34419 * 15 14 11 39 39 H 1.09007 * 113.76732 * 107.74921 * 15 14 11 40 40 H 0.97001 * 119.99789 * 179.97438 * 20 19 17 41 41 H 1.08998 * 113.77081 * 221.14893 * 25 16 15 42 42 H 1.08993 * 113.87010 * 89.76485 * 25 16 15 43 43 H 1.08995 * 109.47219 * 270.02802 * 27 26 2 44 44 H 1.09003 * 109.46526 * 30.02556 * 27 26 2 45 45 H 1.08998 * 109.46635 * 150.02079 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5819 1.4091 0.0000 4 6 4.0344 0.4840 0.0057 5 8 5.1759 0.9096 0.0113 6 7 3.6508 -0.8025 0.0001 7 6 4.6312 -1.8909 0.0001 8 6 4.9675 -2.2641 -1.4207 9 8 4.4397 -1.6789 -2.3425 10 7 5.8548 -3.2483 -1.6669 11 6 6.1821 -3.6107 -3.0481 12 1 5.2940 -3.5058 -3.6715 13 6 7.2840 -2.6868 -3.5705 14 6 6.6683 -5.0608 -3.0934 15 6 6.6229 -5.6861 -4.4994 16 7 6.0986 -6.8964 -3.8322 17 6 6.0908 -8.2317 -4.1357 18 1 5.6301 -8.9366 -3.4595 19 6 6.6750 -8.6793 -5.3128 20 7 7.2368 -7.8203 -6.1367 21 14 6.6649 -10.5008 -5.7266 22 1 5.2623 -10.9800 -5.8175 23 1 7.3475 -10.7166 -7.0277 24 1 7.3774 -11.2539 -4.6634 25 6 5.5894 -6.0886 -2.7069 26 6 2.3110 -1.0539 0.0005 27 6 1.7707 -2.4608 0.0017 28 1 -0.3634 0.0000 1.0276 29 1 -0.3635 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5138 31 1 4.2132 -2.7565 0.5140 32 1 5.5356 -1.5652 0.5140 33 1 6.2772 -3.7162 -0.9297 34 1 8.1454 -2.7359 -2.9044 35 1 6.9120 -1.6629 -3.6083 36 1 7.5796 -3.0032 -4.5707 37 1 7.6180 -5.2067 -2.5787 38 1 5.9076 -5.2091 -5.1694 39 1 7.6054 -5.8229 -4.9513 40 1 7.6453 -8.1331 -6.9590 41 1 5.7482 -6.5461 -1.7304 42 1 4.5700 -5.7295 -2.8475 43 1 1.6403 -2.7990 1.0296 44 1 0.8096 -2.4812 -0.5122 45 1 2.4712 -3.1194 -0.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282742320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:39 Heat of formation + Delta-G solvation = 14.122365 kcal Electronic energy + Delta-G solvation = -27331.269797 eV Core-core repulsion = 23477.725274 eV Total energy + Delta-G solvation = -3853.544523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.46285 -39.60243 -38.07796 -37.82197 -34.91111 -33.86565 -32.27927 -31.19765 -30.11049 -29.25143 -27.51814 -25.50743 -24.83264 -24.22553 -23.61190 -21.49800 -20.55763 -20.04730 -19.21539 -18.46992 -17.61453 -17.25504 -16.79041 -16.06942 -15.87196 -15.35421 -15.20677 -14.80412 -14.25442 -14.23494 -14.12441 -13.95906 -13.85664 -13.57091 -13.31446 -13.24554 -12.87628 -12.73817 -12.43183 -12.28351 -12.03876 -11.66638 -11.63646 -11.45405 -11.26861 -11.16747 -10.90994 -10.73241 -10.40865 -10.29631 -10.28865 -9.92984 -9.86607 -9.52710 -9.41610 -8.97362 -8.82791 -8.08070 -6.92068 -5.80293 -3.12880 0.73423 1.15830 1.51324 1.90547 2.42425 2.48139 3.16362 3.36726 3.40757 3.42449 4.16674 4.41464 4.43175 4.52042 4.68535 4.73986 4.84728 5.02276 5.06031 5.06859 5.12681 5.24625 5.34906 5.36091 5.49592 5.51606 5.54637 5.60021 5.77159 5.92341 5.93907 6.02804 6.20662 6.29167 6.40150 6.45728 6.50738 6.55912 6.72369 7.08642 7.17902 7.30978 7.45243 7.51952 7.94331 8.12152 9.00737 9.67268 10.55799 11.36820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021900 B = 0.002343 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.221475 B =11949.697419 C =12720.000391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.209 4.209 3 S 0.003 5.997 4 C 0.488 3.512 5 O -0.474 6.474 6 N -0.513 5.513 7 C 0.079 3.921 8 C 0.496 3.504 9 O -0.527 6.527 10 N -0.713 5.713 11 C 0.152 3.848 12 H 0.087 0.913 13 C -0.159 4.159 14 C -0.147 4.147 15 C 0.176 3.824 16 N -0.612 5.612 17 C -0.226 4.226 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.912 3.088 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.284 1.284 25 C 0.126 3.874 26 C 0.107 3.893 27 C -0.101 4.101 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.400 0.600 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.255 0.745 41 H 0.040 0.960 42 H 0.031 0.969 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.795 14.671 16.772 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.328 4.328 3 S 0.246 5.754 4 C 0.171 3.829 5 O -0.353 6.353 6 N -0.233 5.233 7 C -0.050 4.050 8 C 0.279 3.721 9 O -0.402 6.402 10 N -0.364 5.364 11 C 0.048 3.952 12 H 0.105 0.895 13 C -0.217 4.217 14 C -0.167 4.167 15 C 0.050 3.950 16 N -0.338 5.338 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C 0.000 4.000 26 C -0.003 4.003 27 C -0.160 4.160 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.234 0.766 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.093 0.907 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.540 16.409 15.875 25.147 hybrid contribution 0.580 -2.595 -0.076 2.660 sum -9.961 13.814 15.799 23.230 Atomic orbital electron populations 1.20108 0.85691 1.03444 1.02722 1.23429 0.99650 0.92013 1.17752 1.85028 0.97852 1.11225 1.81278 1.21482 0.94628 0.84605 0.82223 1.90961 1.19282 1.71733 1.53331 1.45524 1.05754 1.06947 1.65113 1.21739 0.94909 0.91595 0.96791 1.20639 0.79940 0.80570 0.90904 1.90755 1.52009 1.51945 1.45540 1.46076 1.43724 1.36616 1.09992 1.21155 0.98549 0.94388 0.81148 0.89454 1.22111 0.98266 0.99402 1.01943 1.23870 0.99645 0.90288 1.02900 1.22230 0.99188 0.83840 0.89757 1.45968 1.65444 1.01532 1.20833 1.18964 1.31921 0.80855 1.03593 0.90351 1.24791 1.00868 0.97911 0.96828 1.69795 1.42018 1.32569 1.12408 0.86203 0.77606 0.84467 0.77480 1.21189 1.21513 1.21076 1.22519 0.94625 0.90176 0.92698 1.19207 0.81754 0.98248 1.01102 1.20788 1.02557 0.89059 1.03634 0.90685 0.90848 0.90224 0.85928 0.85869 0.76601 0.92679 0.92852 0.90926 0.89245 0.95426 0.90658 0.93516 0.94157 0.95165 0.89530 0.88922 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.10 36.00 0.36 0.03 16 2 C -0.21 -1.87 6.72 -36.22 -0.24 -2.11 16 3 S 0.00 0.03 22.97 -107.50 -2.47 -2.44 16 4 C 0.49 6.70 8.27 53.82 0.45 7.14 16 5 O -0.47 -7.84 17.55 5.08 0.09 -7.75 16 6 N -0.51 -5.79 2.09 -118.57 -0.25 -6.04 16 7 C 0.08 0.74 5.47 -5.20 -0.03 0.71 16 8 C 0.50 6.37 7.60 -10.98 -0.08 6.29 16 9 O -0.53 -9.13 16.09 5.56 0.09 -9.04 16 10 N -0.71 -8.40 4.95 -53.80 -0.27 -8.67 16 11 C 0.15 2.26 2.29 -67.93 -0.16 2.10 16 12 H 0.09 1.52 7.49 -51.93 -0.39 1.13 16 13 C -0.16 -2.28 9.46 37.15 0.35 -1.93 16 14 C -0.15 -2.51 3.35 -89.69 -0.30 -2.81 16 15 C 0.18 3.98 6.90 -2.84 -0.02 3.97 16 16 N -0.61 -15.30 3.70 -177.73 -0.66 -15.95 16 17 C -0.23 -6.25 10.70 -15.06 -0.16 -6.41 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.05 11.39 55.49 0.63 -26.42 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C 0.13 2.40 8.38 -2.97 -0.02 2.38 16 26 C 0.11 1.00 6.59 -82.51 -0.54 0.46 16 27 C -0.10 -0.65 9.07 36.01 0.33 -0.32 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.35 6.77 -51.93 -0.35 0.00 16 31 H 0.12 0.68 6.83 -51.93 -0.35 0.33 16 32 H 0.12 1.02 7.80 -51.93 -0.40 0.62 16 33 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.06 7.99 -51.93 -0.42 0.65 16 37 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.03 0.65 8.03 -51.93 -0.42 0.24 16 39 H 0.08 1.89 7.16 -51.93 -0.37 1.52 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.58 8.10 -51.93 -0.42 0.16 16 43 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.49 6.69 -51.93 -0.35 0.14 16 45 H 0.08 0.56 6.70 -51.93 -0.35 0.21 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -36.20 385.30 -8.89 -45.09 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.68 Total: -0.64 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -0.17 Total: 9.19 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.54 Total: -57.08 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 0.03 SS G_CDS: -2.47 Total: -2.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.20 -8.89 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282742320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.217 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds