Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30251 * 125.61600 * 2 1 4 4 C 1.34480 * 108.69978 * 180.19168 * 3 2 1 5 5 C 1.34333 * 107.66662 * 359.55233 * 4 3 2 6 6 C 1.50697 * 126.44380 * 180.24083 * 5 4 3 7 7 N 1.46900 * 109.46897 * 90.00824 * 6 5 4 8 8 C 1.46896 * 111.00207 * 180.02562 * 7 6 5 9 9 C 1.53779 * 113.61567 * 254.13645 * 8 7 6 10 10 C 1.53958 * 87.02393 * 220.04601 * 9 8 7 11 11 N 1.46491 * 113.66963 * 139.92716 * 10 9 8 12 12 C 1.46502 * 120.00263 * 322.44449 * 11 10 9 13 13 C 1.34777 * 119.99929 * 142.44002 * 11 10 9 14 14 O 1.21282 * 120.00057 * 0.02562 * 13 11 10 15 15 C 1.50698 * 120.00275 * 180.02562 * 13 11 10 16 16 S 1.81003 * 109.47456 * 180.02562 * 15 13 11 17 17 C 1.76204 * 99.99925 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00389 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99521 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00442 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99977 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46901 * 60.00104 * 21 19 17 23 23 H 1.48495 * 109.47559 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47070 * 300.00726 * 21 19 17 25 25 C 1.53779 * 113.61814 * 156.52663 * 8 7 6 26 26 O 1.33964 * 125.61796 * 179.69989 * 2 1 3 27 27 H 1.09011 * 109.47350 * 270.29440 * 1 2 3 28 28 H 1.08991 * 109.47537 * 30.29458 * 1 2 3 29 29 H 1.09003 * 109.47302 * 150.30264 * 1 2 3 30 30 H 1.08002 * 126.17050 * 179.82616 * 4 3 2 31 31 H 1.08997 * 109.47389 * 210.00764 * 6 5 4 32 32 H 1.08997 * 109.47344 * 330.00999 * 6 5 4 33 33 H 1.00902 * 111.00541 * 56.04532 * 7 6 5 34 34 H 1.09002 * 112.85224 * 25.33013 * 8 7 6 35 35 H 1.09001 * 113.61117 * 334.56144 * 9 8 7 36 36 H 1.09004 * 113.61644 * 105.46900 * 9 8 7 37 37 H 1.09000 * 113.53558 * 270.81247 * 10 9 8 38 38 H 1.09006 * 109.46829 * 89.99782 * 12 11 10 39 39 H 1.09003 * 109.46861 * 209.99552 * 12 11 10 40 40 H 1.08998 * 109.46870 * 329.99993 * 12 11 10 41 41 H 1.08995 * 109.47418 * 300.00674 * 15 13 11 42 42 H 1.09003 * 109.47219 * 60.00218 * 15 13 11 43 43 H 0.96995 * 120.00581 * 179.97438 * 20 19 17 44 44 H 1.09006 * 113.61881 * 254.53161 * 25 8 7 45 45 H 1.09000 * 113.61710 * 25.43269 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 3.5697 -0.6756 0.0031 6 6 4.7937 -1.5548 0.0069 7 7 5.1923 -1.8331 1.3932 8 6 6.3853 -2.6891 1.4362 9 6 6.0872 -4.1411 1.8455 10 6 7.3833 -4.0888 2.6748 11 7 7.2763 -4.7536 3.9757 12 6 6.0342 -4.6591 4.7468 13 6 8.3205 -5.4524 4.4633 14 8 9.3489 -5.5305 3.8251 15 6 8.2104 -6.1369 5.8013 16 16 9.7653 -6.9845 6.1754 17 6 9.3662 -7.6771 7.7457 18 1 8.3908 -7.5091 8.1778 19 6 10.3054 -8.4385 8.4272 20 7 11.4944 -8.6429 7.9008 21 14 9.8827 -9.1722 10.0923 22 1 8.7174 -10.0820 9.9509 23 1 11.0477 -9.9355 10.6072 24 1 9.5466 -8.0817 11.0428 25 6 7.1856 -2.5652 2.7435 26 8 2.2872 -1.0890 0.0057 27 1 -0.3634 0.0053 1.0277 28 1 -0.3634 0.8872 -0.5183 29 1 -0.3634 -0.8927 -0.5091 30 1 4.4156 1.3162 -0.0080 31 1 4.5692 -2.4924 -0.5017 32 1 5.6076 -1.0468 -0.5102 33 1 4.4318 -2.2458 1.9123 34 1 6.9988 -2.6055 0.5391 35 1 5.1863 -4.2482 2.4497 36 1 6.1274 -4.8459 1.0149 37 1 8.2698 -4.3893 2.1163 38 1 5.3746 -5.4835 4.4758 39 1 6.2626 -4.7113 5.8114 40 1 5.5413 -3.7121 4.5269 41 1 8.0065 -5.3950 6.5733 42 1 7.3981 -6.8633 5.7721 43 1 12.1509 -9.1747 8.3772 44 1 8.1113 -1.9996 2.6369 45 1 6.5857 -2.2407 3.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284744402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = 16.347244 kcal Electronic energy + Delta-G solvation = -25696.455325 eV Core-core repulsion = 21843.007280 eV Total energy + Delta-G solvation = -3853.448045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.71972 -40.38306 -38.44844 -35.71646 -35.14749 -34.02032 -32.43346 -32.21084 -29.48136 -28.60732 -26.99213 -25.94689 -25.52717 -25.13198 -23.18371 -22.69199 -21.41512 -20.14677 -19.07047 -17.70305 -17.38497 -17.29139 -16.91870 -16.30933 -15.96270 -15.50144 -15.15237 -15.06967 -14.80810 -14.38641 -14.33403 -13.93280 -13.56365 -13.53156 -13.29813 -13.15540 -13.00451 -12.91013 -12.69354 -12.60654 -12.40943 -12.23722 -11.93709 -11.65996 -11.37266 -11.21160 -11.04925 -11.04241 -11.01108 -10.81442 -10.74047 -9.81805 -9.36966 -9.17272 -9.06328 -8.88312 -8.48667 -8.23682 -6.50702 -6.21843 -3.92689 0.98364 2.17954 2.29242 2.91379 3.01440 3.22944 3.25041 3.28600 3.55854 3.62830 3.78760 4.19980 4.21384 4.30150 4.31796 4.55374 4.62308 4.65001 4.73068 4.85207 4.88856 4.93354 5.04062 5.07809 5.10665 5.13132 5.26578 5.38917 5.42974 5.45132 5.47392 5.56079 5.57583 5.64278 5.74360 5.84001 5.90210 5.93578 5.98973 6.12462 6.50069 6.66101 6.77673 7.32893 7.53081 7.58888 8.34506 8.54238 9.23202 10.85517 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.001641 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.931433 B =17061.881964 C =17705.885443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.487 5.487 4 C -0.016 4.016 5 C -0.051 4.051 6 C 0.146 3.854 7 N -0.672 5.672 8 C 0.069 3.931 9 C -0.179 4.179 10 C 0.127 3.873 11 N -0.612 5.612 12 C 0.079 3.921 13 C 0.534 3.466 14 O -0.517 6.517 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.138 4.138 26 O -0.204 6.204 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.185 0.815 31 H 0.052 0.948 32 H 0.108 0.892 33 H 0.347 0.653 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.394 16.255 -16.910 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.216 5.216 4 C -0.156 4.156 5 C -0.104 4.104 6 C 0.017 3.983 7 N -0.303 5.303 8 C -0.041 4.041 9 C -0.219 4.219 10 C 0.022 3.978 11 N -0.347 5.347 12 C -0.064 4.064 13 C 0.322 3.678 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.200 1.200 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.177 4.177 26 O -0.091 6.091 27 H 0.112 0.888 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.202 0.798 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.583 17.193 -17.761 31.536 hybrid contribution -1.636 -1.858 1.658 2.980 sum -21.219 15.335 -16.102 30.736 Atomic orbital electron populations 1.20273 0.81304 1.05121 1.04821 1.26328 0.96486 0.78675 1.00270 1.70481 1.02242 1.30295 1.18630 1.23086 0.94942 0.92981 1.04570 1.23288 0.83221 0.95599 1.08302 1.20332 0.89841 0.96647 0.91444 1.60514 1.08234 1.50072 1.11478 1.22880 0.92081 0.89932 0.99205 1.24208 0.99199 0.97969 1.00531 1.22335 0.98728 0.92110 0.84604 1.47765 1.14494 1.52861 1.19607 1.21729 0.86362 1.01508 0.96831 1.20374 0.82517 0.77560 0.87336 1.90685 1.28609 1.59949 1.59823 1.23565 1.07815 1.02790 0.95915 1.85390 1.10409 1.63181 1.24518 1.22819 1.02854 1.37866 1.04900 0.91002 1.24984 0.94453 0.95572 0.98507 1.70003 1.04611 1.37384 1.38263 0.86231 0.78031 0.79068 0.82206 1.19953 1.20791 1.19937 1.23547 1.00415 0.96329 0.97423 1.84377 1.16778 1.37927 1.70007 0.88818 0.88071 0.89350 0.79825 0.92991 0.87403 0.83396 0.87733 0.89309 0.90795 0.86155 0.92830 0.90511 0.91325 0.89234 0.89307 0.92123 0.90511 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.01 0.38 0.16 16 2 C 0.19 1.56 8.34 -12.95 -0.11 1.46 16 3 N -0.49 -4.93 11.29 -11.10 -0.13 -5.06 16 4 C -0.02 -0.15 11.80 -17.77 -0.21 -0.35 16 5 C -0.05 -0.42 6.90 -35.69 -0.25 -0.66 16 6 C 0.15 0.89 6.09 -4.98 -0.03 0.86 16 7 N -0.67 -4.64 6.60 -107.14 -0.71 -5.34 16 8 C 0.07 0.50 4.16 -66.90 -0.28 0.22 16 9 C -0.18 -1.46 7.15 -25.83 -0.18 -1.64 16 10 C 0.13 1.45 4.20 -67.03 -0.28 1.17 16 11 N -0.61 -8.42 3.08 -172.89 -0.53 -8.95 16 12 C 0.08 0.81 8.85 59.85 0.53 1.34 16 13 C 0.53 10.11 7.69 -10.99 -0.08 10.02 16 14 O -0.52 -11.72 15.35 5.56 0.09 -11.64 16 15 C -0.15 -3.05 4.71 36.00 0.17 -2.89 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 21 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C -0.14 -1.29 7.42 -25.92 -0.19 -1.48 16 26 O -0.20 -1.81 10.78 5.36 0.06 -1.76 16 27 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.11 0.51 8.13 -51.93 -0.42 0.09 16 33 H 0.35 2.41 8.20 -39.29 -0.32 2.08 16 34 H 0.10 0.66 7.88 -51.93 -0.41 0.25 16 35 H 0.09 0.67 6.42 -51.93 -0.33 0.34 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.12 1.60 7.24 -51.93 -0.38 1.22 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.81 6.44 -51.93 -0.33 0.48 16 40 H 0.07 0.55 6.34 -51.93 -0.33 0.22 16 41 H 0.09 1.69 7.40 -51.92 -0.38 1.30 16 42 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.09 0.85 6.92 -51.93 -0.36 0.49 16 LS Contribution 388.83 15.07 5.86 5.86 Total: -1.00 -36.28 388.83 -8.82 -45.10 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.62 Total: -0.49 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.34 Total: -4.75 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.63 Total: -44.76 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.14 Total: -13.39 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.28 -8.82 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284744402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.446 kcal (2) G-P(sol) polarization free energy of solvation -36.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds