Wall clock time and date at job start Sat Apr 11 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30251 * 125.61600 * 2 1 4 4 C 1.34480 * 108.69978 * 180.19168 * 3 2 1 5 5 C 1.34333 * 107.66662 * 359.55233 * 4 3 2 6 6 C 1.50697 * 126.44380 * 180.24083 * 5 4 3 7 7 N 1.46900 * 109.46897 * 90.00824 * 6 5 4 8 8 C 1.46896 * 111.00207 * 180.02562 * 7 6 5 9 9 C 1.53779 * 113.61567 * 254.13645 * 8 7 6 10 10 C 1.53958 * 87.02393 * 220.04601 * 9 8 7 11 11 N 1.46491 * 113.66963 * 139.92716 * 10 9 8 12 12 C 1.46502 * 120.00263 * 322.44449 * 11 10 9 13 13 C 1.34777 * 119.99929 * 142.44002 * 11 10 9 14 14 O 1.21282 * 120.00057 * 0.02562 * 13 11 10 15 15 C 1.50698 * 120.00275 * 180.02562 * 13 11 10 16 16 S 1.81003 * 109.47456 * 180.02562 * 15 13 11 17 17 C 1.76204 * 99.99925 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00389 * 359.97438 * 17 16 15 19 19 C 1.38799 * 119.99521 * 179.97438 * 17 16 15 20 20 N 1.31628 * 120.00442 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99977 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46901 * 60.00104 * 21 19 17 23 23 H 1.48495 * 109.47559 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47070 * 300.00726 * 21 19 17 25 25 C 1.53779 * 113.61814 * 156.52663 * 8 7 6 26 26 O 1.33964 * 125.61796 * 179.69989 * 2 1 3 27 27 H 1.09011 * 109.47350 * 270.29440 * 1 2 3 28 28 H 1.08991 * 109.47537 * 30.29458 * 1 2 3 29 29 H 1.09003 * 109.47302 * 150.30264 * 1 2 3 30 30 H 1.08002 * 126.17050 * 179.82616 * 4 3 2 31 31 H 1.08997 * 109.47389 * 210.00764 * 6 5 4 32 32 H 1.08997 * 109.47344 * 330.00999 * 6 5 4 33 33 H 1.00902 * 111.00541 * 56.04532 * 7 6 5 34 34 H 1.09002 * 112.85224 * 25.33013 * 8 7 6 35 35 H 1.09001 * 113.61117 * 334.56144 * 9 8 7 36 36 H 1.09004 * 113.61644 * 105.46900 * 9 8 7 37 37 H 1.09000 * 113.53558 * 270.81247 * 10 9 8 38 38 H 1.09006 * 109.46829 * 89.99782 * 12 11 10 39 39 H 1.09003 * 109.46861 * 209.99552 * 12 11 10 40 40 H 1.08998 * 109.46870 * 329.99993 * 12 11 10 41 41 H 1.08995 * 109.47418 * 300.00674 * 15 13 11 42 42 H 1.09003 * 109.47219 * 60.00218 * 15 13 11 43 43 H 0.96995 * 120.00581 * 179.97438 * 20 19 17 44 44 H 1.09006 * 113.61881 * 254.53161 * 25 8 7 45 45 H 1.09000 * 113.61710 * 25.43269 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 -0.0043 5 6 3.5697 -0.6756 0.0031 6 6 4.7937 -1.5548 0.0069 7 7 5.1923 -1.8331 1.3932 8 6 6.3853 -2.6891 1.4362 9 6 6.0872 -4.1411 1.8455 10 6 7.3833 -4.0888 2.6748 11 7 7.2763 -4.7536 3.9757 12 6 6.0342 -4.6591 4.7468 13 6 8.3205 -5.4524 4.4633 14 8 9.3489 -5.5305 3.8251 15 6 8.2104 -6.1369 5.8013 16 16 9.7653 -6.9845 6.1754 17 6 9.3662 -7.6771 7.7457 18 1 8.3908 -7.5091 8.1778 19 6 10.3054 -8.4385 8.4272 20 7 11.4944 -8.6429 7.9008 21 14 9.8827 -9.1722 10.0923 22 1 8.7174 -10.0820 9.9509 23 1 11.0477 -9.9355 10.6072 24 1 9.5466 -8.0817 11.0428 25 6 7.1856 -2.5652 2.7435 26 8 2.2872 -1.0890 0.0057 27 1 -0.3634 0.0053 1.0277 28 1 -0.3634 0.8872 -0.5183 29 1 -0.3634 -0.8927 -0.5091 30 1 4.4156 1.3162 -0.0080 31 1 4.5692 -2.4924 -0.5017 32 1 5.6076 -1.0468 -0.5102 33 1 4.4318 -2.2458 1.9123 34 1 6.9988 -2.6055 0.5391 35 1 5.1863 -4.2482 2.4497 36 1 6.1274 -4.8459 1.0149 37 1 8.2698 -4.3893 2.1163 38 1 5.3746 -5.4835 4.4758 39 1 6.2626 -4.7113 5.8114 40 1 5.5413 -3.7121 4.5269 41 1 8.0065 -5.3950 6.5733 42 1 7.3981 -6.8633 5.7721 43 1 12.1509 -9.1747 8.3772 44 1 8.1113 -1.9996 2.6369 45 1 6.5857 -2.2407 3.5937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284744402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:51 Heat of formation + Delta-G solvation = -11.491859 kcal Electronic energy + Delta-G solvation = -25697.662519 eV Core-core repulsion = 21843.007280 eV Total energy + Delta-G solvation = -3854.655239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.31067 -41.40123 -39.59424 -36.58379 -35.77137 -34.95578 -34.58856 -32.71622 -30.81124 -29.31226 -27.92598 -27.68186 -26.66366 -25.77005 -24.04843 -23.26764 -21.98838 -21.14923 -20.15564 -19.57813 -18.32114 -17.93470 -17.81541 -17.25535 -16.88422 -16.86522 -16.68222 -16.22623 -15.66679 -15.53268 -15.20047 -14.81415 -14.59490 -14.50349 -14.28942 -13.95860 -13.83835 -13.68403 -13.50525 -13.35347 -13.24048 -13.22643 -13.14689 -12.98711 -12.86554 -12.65666 -12.29819 -12.09170 -12.03134 -11.75726 -11.69272 -11.48332 -11.13199 -10.85920 -10.27960 -9.75072 -9.64046 -9.39150 -8.68108 -8.34707 -6.13528 0.40704 1.25492 1.43676 1.45700 1.55276 1.55548 1.65027 1.70046 2.12188 2.27467 2.99221 3.11254 3.23170 3.25407 3.50772 3.62845 3.75205 3.78640 3.92108 3.96288 4.10088 4.18584 4.21503 4.29239 4.45006 4.45911 4.54504 4.63869 4.64926 4.69757 4.72052 4.74458 4.76634 4.86776 4.96092 5.03207 5.07077 5.08888 5.16448 5.39949 5.40853 5.63050 5.92403 6.19023 6.23882 6.31478 6.73772 7.06149 7.14405 8.74292 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029041 B = 0.001641 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.931433 B =17061.881964 C =17705.885443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.186 3.814 3 N -0.522 5.522 4 C -0.034 4.034 5 C -0.054 4.054 6 C 0.150 3.850 7 N -0.674 5.674 8 C 0.087 3.913 9 C -0.163 4.163 10 C 0.108 3.892 11 N -0.598 5.598 12 C 0.069 3.931 13 C 0.530 3.470 14 O -0.567 6.567 15 C -0.124 4.124 16 S -0.154 6.154 17 C -0.548 4.548 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.133 4.133 26 O -0.213 6.213 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.196 0.804 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.349 0.651 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.502 16.739 -16.563 33.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.021 4.021 3 N -0.252 5.252 4 C -0.173 4.173 5 C -0.107 4.107 6 C 0.022 3.978 7 N -0.305 5.305 8 C -0.023 4.023 9 C -0.203 4.203 10 C 0.004 3.996 11 N -0.330 5.330 12 C -0.073 4.073 13 C 0.317 3.683 14 O -0.446 6.446 15 C -0.275 4.275 16 S 0.074 5.926 17 C -0.695 4.695 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.172 4.172 26 O -0.101 6.101 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.213 0.787 31 H 0.079 0.921 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.753 17.716 -17.432 33.696 hybrid contribution -0.787 -1.894 1.459 2.517 sum -23.541 15.822 -15.973 32.552 Atomic orbital electron populations 1.20522 0.78553 1.06395 1.06044 1.27207 0.97913 0.78170 0.98800 1.70481 1.03096 1.31468 1.20194 1.23393 0.95117 0.93749 1.05043 1.23588 0.83532 0.95645 1.07912 1.20419 0.89472 0.96896 0.91050 1.60448 1.08144 1.49803 1.12111 1.22708 0.92028 0.89129 0.98481 1.24150 0.97495 0.98701 0.99923 1.22576 0.99864 0.93475 0.83728 1.47776 1.14086 1.50823 1.20360 1.22045 0.84968 1.03921 0.96323 1.20176 0.83198 0.78193 0.86697 1.90665 1.30845 1.62203 1.60887 1.23385 1.03651 1.02881 0.97550 1.85576 1.16664 1.64905 1.25491 1.23166 1.03445 1.38015 1.04921 0.89916 1.26129 0.94106 0.95823 1.03005 1.70175 1.05944 1.38338 1.40267 0.85006 0.78095 0.78415 0.76487 1.18612 1.20362 1.18650 1.23505 1.00595 0.94176 0.98944 1.84388 1.17195 1.38315 1.70201 0.87457 0.87273 0.87568 0.78720 0.92080 0.85976 0.83177 0.86532 0.87966 0.90359 0.88696 0.91041 0.90660 0.88373 0.87503 0.87576 0.91978 0.91342 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 71.24 0.75 0.43 16 2 C 0.19 2.83 8.34 88.34 0.74 3.57 16 3 N -0.52 -10.20 11.29 -303.83 -3.43 -13.63 16 4 C -0.03 -0.58 11.80 83.39 0.98 0.41 16 5 C -0.05 -0.79 6.90 24.79 0.17 -0.62 16 6 C 0.15 1.45 6.09 85.56 0.52 1.97 16 7 N -0.67 -7.39 6.60 -492.88 -3.25 -10.65 16 8 C 0.09 1.03 4.16 45.44 0.19 1.22 16 9 C -0.16 -2.22 7.15 31.18 0.22 -1.99 16 10 C 0.11 2.34 4.20 45.58 0.19 2.54 16 11 N -0.60 -15.68 3.08 -819.31 -2.53 -18.21 16 12 C 0.07 1.21 8.85 127.77 1.13 2.34 16 13 C 0.53 20.18 7.69 87.66 0.67 20.86 16 14 O -0.57 -26.85 15.35 -3.04 -0.05 -26.90 16 15 C -0.12 -5.00 4.71 71.24 0.34 -4.67 16 16 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 17 C -0.55 -31.43 9.50 67.95 0.65 -30.79 16 18 H 0.08 4.38 7.80 -2.92 -0.02 4.36 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 21 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 22 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.13 -2.25 7.42 31.12 0.23 -2.02 16 26 O -0.21 -3.46 10.78 -3.73 -0.04 -3.50 16 27 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 28 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.12 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.35 3.72 8.20 -89.69 -0.74 2.98 16 34 H 0.12 1.16 7.88 -2.39 -0.02 1.14 16 35 H 0.10 1.15 6.42 -2.39 -0.02 1.14 16 36 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 2.59 7.24 -2.39 -0.02 2.57 16 38 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.07 1.38 6.44 -2.39 -0.02 1.36 16 40 H 0.10 1.18 6.34 -2.39 -0.02 1.16 16 41 H 0.11 3.92 7.40 -2.40 -0.02 3.90 16 42 H 0.11 3.89 8.11 -2.39 -0.02 3.87 16 43 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.09 1.53 6.92 -2.39 -0.02 1.52 16 Total: -1.00 -82.39 388.83 -0.62 -83.01 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: 0.28 Total: 15.49 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 7.25 Total: -5.49 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -8.93 Total: -98.37 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.09 Total: -30.39 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -82.39 -0.62 -83.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284744402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.515 kcal (2) G-P(sol) polarization free energy of solvation -82.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds