Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32563 * 121.64793 * 2 1 4 4 S 1.77224 * 105.32339 * 179.72423 * 3 2 1 5 5 C 1.72217 * 94.84350 * 0.34246 * 4 3 2 6 6 O 1.21833 * 127.05534 * 179.97438 * 5 4 3 7 7 N 1.34232 * 105.88564 * 359.66078 * 5 4 3 8 8 C 1.46498 * 121.38408 * 180.28017 * 7 5 4 9 9 C 1.53002 * 109.47152 * 89.97399 * 8 7 5 10 10 C 1.50695 * 109.47657 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99872 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00358 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47541 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.84675 * 314.66808 * 14 13 12 16 16 C 1.53776 * 113.61019 * 85.86164 * 14 13 12 17 17 C 1.53954 * 87.01924 * 139.95366 * 16 14 13 18 18 H 1.08994 * 113.67186 * 220.06744 * 17 16 14 19 19 N 1.46507 * 113.61263 * 89.19668 * 17 16 14 20 20 C 1.36937 * 119.99956 * 107.46849 * 19 17 16 21 21 H 1.07999 * 119.99906 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99942 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99881 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99998 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47370 * 89.99749 * 24 22 20 26 26 H 1.48497 * 109.47032 * 209.99674 * 24 22 20 27 27 H 1.48501 * 109.47063 * 329.99744 * 24 22 20 28 28 C 1.53777 * 113.61420 * 183.47134 * 14 13 12 29 29 H 1.08994 * 109.47311 * 270.01848 * 1 2 3 30 30 H 1.09002 * 109.47535 * 30.02298 * 1 2 3 31 31 H 1.09006 * 109.47315 * 150.02069 * 1 2 3 32 32 H 1.08000 * 127.33777 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47737 * 209.97790 * 8 7 5 34 34 H 1.09001 * 109.47057 * 329.97753 * 8 7 5 35 35 H 1.08999 * 109.47119 * 300.00769 * 9 8 7 36 36 H 1.09001 * 109.46851 * 60.00228 * 9 8 7 37 37 H 0.96999 * 120.00322 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47225 * 299.99971 * 13 12 10 39 39 H 1.09001 * 109.47179 * 59.99696 * 13 12 10 40 40 H 1.08998 * 113.61616 * 254.52853 * 16 14 13 41 41 H 1.08999 * 113.61569 * 25.43703 * 16 14 13 42 42 H 0.96996 * 120.00097 * 287.47155 * 19 17 16 43 43 H 0.96994 * 120.00128 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61870 * 334.56492 * 28 14 13 45 45 H 1.09002 * 113.61298 * 105.47598 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6304 0.0082 5 6 3.5606 -1.0573 0.0008 6 8 4.3673 -1.9703 0.0021 7 7 2.2222 -1.1605 0.0004 8 6 1.5576 -2.4660 0.0008 9 6 1.3263 -2.9201 1.4435 10 6 0.6433 -4.2634 1.4440 11 8 0.3680 -4.8041 0.3939 12 7 0.3373 -4.8634 2.6114 13 6 -0.3273 -6.1690 2.6119 14 6 -0.5585 -6.6232 4.0545 15 1 0.3163 -6.4795 4.6888 16 6 -1.8605 -6.0830 4.6691 17 6 -2.0368 -7.4698 5.3140 18 1 -3.0655 -7.8299 5.3031 19 7 -1.4063 -7.5890 6.6311 20 6 -2.1808 -7.6323 7.7596 21 1 -3.2564 -7.5790 7.6786 22 6 -1.5834 -7.7457 9.0075 23 7 -2.3278 -7.7868 10.0921 24 14 0.2770 -7.8386 9.1474 25 1 0.8323 -6.4679 9.2814 26 1 0.6441 -8.6403 10.3421 27 1 0.8335 -8.4813 7.9298 28 6 -1.1770 -8.0265 4.1669 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.8152 2.1367 -0.0004 33 1 0.5997 -2.3864 -0.5130 34 1 2.1859 -3.1937 -0.5128 35 1 2.2843 -2.9998 1.9573 36 1 0.6980 -2.1924 1.9571 37 1 0.5570 -4.4308 3.4513 38 1 -1.2851 -6.0894 2.0978 39 1 0.3012 -6.8968 2.0985 40 1 -1.7030 -5.2817 5.3910 41 1 -2.6258 -5.8445 3.9306 42 1 -0.4403 -7.6371 6.7038 43 1 -1.9104 -7.8657 10.9641 44 1 -1.7552 -8.3203 3.2909 45 1 -0.4686 -8.7919 4.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316630778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -8.246921 kcal Electronic energy + Delta-G solvation = -26173.604386 eV Core-core repulsion = 22319.089858 eV Total energy + Delta-G solvation = -3854.514528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52200 -39.98099 -38.73154 -37.97792 -34.92146 -33.87264 -33.29744 -31.77262 -30.74161 -29.01542 -27.48905 -25.32700 -25.21053 -23.76317 -23.22974 -21.81051 -20.91955 -20.53263 -18.71685 -18.50624 -17.87658 -17.72198 -16.96943 -16.57947 -16.08299 -16.03058 -15.42703 -15.07073 -14.77672 -14.59571 -14.24176 -14.19255 -14.09504 -13.92367 -13.63428 -13.33797 -13.18290 -12.87158 -12.75972 -12.54363 -12.12003 -11.89327 -11.74581 -11.62034 -11.56449 -11.43090 -10.97935 -10.59050 -10.51178 -10.42125 -10.23755 -10.10467 -9.93413 -9.72093 -9.59204 -9.20579 -8.97726 -8.39363 -7.36882 -5.85516 -3.22036 0.53654 0.92916 1.36017 1.70931 2.24829 2.35010 3.00886 3.30124 3.32565 3.39044 3.98341 4.22405 4.25202 4.48438 4.50476 4.57184 4.78749 4.84382 4.84990 4.87721 4.94841 5.00571 5.03424 5.10614 5.18434 5.31737 5.36300 5.41967 5.43435 5.65852 5.67720 5.76848 5.83333 6.04357 6.16042 6.20501 6.27756 6.40771 6.53877 6.65452 6.81403 6.89117 7.25905 7.91996 7.94437 8.34126 9.11644 9.83875 10.02863 11.32519 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.001947 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.818793 B =14379.020920 C =14944.366272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.103 3.897 3 C -0.239 4.239 4 S 0.000 6.000 5 C 0.478 3.522 6 O -0.470 6.470 7 N -0.533 5.533 8 C 0.117 3.883 9 C -0.159 4.159 10 C 0.518 3.482 11 O -0.545 6.545 12 N -0.722 5.722 13 C 0.130 3.870 14 C -0.124 4.124 15 H 0.089 0.911 16 C -0.166 4.166 17 C 0.173 3.827 18 H 0.071 0.929 19 N -0.730 5.730 20 C -0.248 4.248 21 H 0.092 0.908 22 C 0.006 3.994 23 N -0.931 5.931 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.149 4.149 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.192 0.808 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.403 0.597 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.362 0.638 43 H 0.261 0.739 44 H 0.082 0.918 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 18.842 -23.208 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.008 4.008 3 C -0.377 4.377 4 S 0.243 5.757 5 C 0.160 3.840 6 O -0.349 6.349 7 N -0.254 5.254 8 C -0.009 4.009 9 C -0.200 4.200 10 C 0.303 3.697 11 O -0.423 6.423 12 N -0.373 5.373 13 C 0.007 3.993 14 C -0.143 4.143 15 H 0.108 0.892 16 C -0.207 4.207 17 C 0.061 3.939 18 H 0.089 0.911 19 N -0.370 5.370 20 C -0.378 4.378 21 H 0.110 0.890 22 C -0.190 4.190 23 N -0.578 5.578 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.188 4.188 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.209 0.791 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.238 0.762 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.965 18.475 -23.742 31.120 hybrid contribution 0.360 -0.485 0.761 0.971 sum 8.325 17.990 -22.981 30.349 Atomic orbital electron populations 1.20847 0.86463 1.04763 1.04286 1.19493 0.95951 0.84856 1.00484 1.24922 0.93158 1.01375 1.18291 1.85246 1.08516 1.01133 1.80832 1.21654 0.83773 0.95790 0.82734 1.90998 1.48580 1.42400 1.52895 1.46152 1.06386 1.07831 1.65023 1.21625 1.00080 0.82374 0.96776 1.21982 1.03197 0.96001 0.98838 1.20223 0.78832 0.86572 0.84051 1.90725 1.54177 1.66176 1.31198 1.46059 1.60855 1.21915 1.08426 1.21501 0.97196 0.83091 0.97476 1.22758 0.99005 0.98576 0.93945 0.89243 1.23882 0.95539 1.01409 0.99890 1.21034 0.95993 0.92613 0.84265 0.91052 1.42517 1.04750 1.88256 1.01457 1.19106 0.92164 1.43106 0.83407 0.89017 1.24687 0.97230 1.01785 0.95315 1.69691 1.33984 1.56774 0.97370 0.86567 0.87104 0.77781 0.77160 1.21056 1.21598 1.20330 1.23463 1.00059 0.95152 1.00163 0.89379 0.88986 0.90191 0.79065 0.87730 0.87749 0.88131 0.88103 0.76237 0.91242 0.91684 0.91312 0.90943 0.80521 0.92937 0.89972 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.70 36.00 0.35 0.05 16 2 C 0.10 0.58 6.59 -82.51 -0.54 0.04 16 3 C -0.24 -1.25 11.24 28.82 0.32 -0.93 16 4 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 5 C 0.48 5.08 8.27 53.81 0.45 5.53 16 6 O -0.47 -6.61 17.55 5.07 0.09 -6.52 16 7 N -0.53 -4.29 2.60 -117.28 -0.31 -4.59 16 8 C 0.12 0.94 4.56 -4.04 -0.02 0.92 16 9 C -0.16 -1.21 6.02 -27.88 -0.17 -1.38 16 10 C 0.52 5.46 7.83 -10.99 -0.09 5.37 16 11 O -0.54 -7.58 15.98 5.55 0.09 -7.50 16 12 N -0.72 -7.27 5.56 -60.29 -0.33 -7.60 16 13 C 0.13 1.50 5.50 -4.04 -0.02 1.48 16 14 C -0.12 -1.60 3.63 -89.81 -0.33 -1.93 16 15 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.17 -2.43 7.44 -25.83 -0.19 -2.63 16 17 C 0.17 3.07 4.57 -67.02 -0.31 2.77 16 18 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 19 N -0.73 -16.38 5.11 -52.54 -0.27 -16.65 16 20 C -0.25 -6.76 10.45 -15.06 -0.16 -6.92 16 21 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 22 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 23 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 24 Si 0.88 21.48 27.74 -169.99 -4.71 16.76 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 28 C -0.15 -2.12 7.39 -25.92 -0.19 -2.31 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.11 8.10 -51.93 -0.42 -0.31 16 31 H 0.08 0.24 6.19 -51.93 -0.32 -0.08 16 32 H 0.19 0.45 8.06 -52.49 -0.42 0.02 16 33 H 0.10 0.70 6.08 -51.93 -0.32 0.38 16 34 H 0.10 1.05 7.76 -51.93 -0.40 0.65 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.39 8.47 -40.82 -0.35 3.05 16 38 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.94 7.92 -51.93 -0.41 0.53 16 42 H 0.36 7.98 5.76 -40.82 -0.24 7.75 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -34.49 386.68 -8.98 -43.47 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -6.68 Total: 6.98 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.99 Total: 0.14 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.13 Total: -56.69 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.18 Total: -14.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.76 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.49 -8.98 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316630778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.225 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds