Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32563 * 121.64793 * 2 1 4 4 S 1.77224 * 105.32339 * 179.72423 * 3 2 1 5 5 C 1.72217 * 94.84350 * 0.34246 * 4 3 2 6 6 O 1.21833 * 127.05534 * 179.97438 * 5 4 3 7 7 N 1.34232 * 105.88564 * 359.66078 * 5 4 3 8 8 C 1.46498 * 121.38408 * 180.28017 * 7 5 4 9 9 C 1.53002 * 109.47152 * 89.97399 * 8 7 5 10 10 C 1.50695 * 109.47657 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99872 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00358 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00242 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47541 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.84675 * 314.66808 * 14 13 12 16 16 C 1.53776 * 113.61019 * 85.86164 * 14 13 12 17 17 C 1.53954 * 87.01924 * 139.95366 * 16 14 13 18 18 H 1.08994 * 113.67186 * 220.06744 * 17 16 14 19 19 N 1.46507 * 113.61263 * 89.19668 * 17 16 14 20 20 C 1.36937 * 119.99956 * 107.46849 * 19 17 16 21 21 H 1.07999 * 119.99906 * 0.02562 * 20 19 17 22 22 C 1.38814 * 119.99942 * 179.97438 * 20 19 17 23 23 N 1.31614 * 119.99881 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99998 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47370 * 89.99749 * 24 22 20 26 26 H 1.48497 * 109.47032 * 209.99674 * 24 22 20 27 27 H 1.48501 * 109.47063 * 329.99744 * 24 22 20 28 28 C 1.53777 * 113.61420 * 183.47134 * 14 13 12 29 29 H 1.08994 * 109.47311 * 270.01848 * 1 2 3 30 30 H 1.09002 * 109.47535 * 30.02298 * 1 2 3 31 31 H 1.09006 * 109.47315 * 150.02069 * 1 2 3 32 32 H 1.08000 * 127.33777 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47737 * 209.97790 * 8 7 5 34 34 H 1.09001 * 109.47057 * 329.97753 * 8 7 5 35 35 H 1.08999 * 109.47119 * 300.00769 * 9 8 7 36 36 H 1.09001 * 109.46851 * 60.00228 * 9 8 7 37 37 H 0.96999 * 120.00322 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47225 * 299.99971 * 13 12 10 39 39 H 1.09001 * 109.47179 * 59.99696 * 13 12 10 40 40 H 1.08998 * 113.61616 * 254.52853 * 16 14 13 41 41 H 1.08999 * 113.61569 * 25.43703 * 16 14 13 42 42 H 0.96996 * 120.00097 * 287.47155 * 19 17 16 43 43 H 0.96994 * 120.00128 * 180.02562 * 23 22 20 44 44 H 1.08997 * 113.61870 * 334.56492 * 28 14 13 45 45 H 1.09002 * 113.61298 * 105.47598 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2025 1.1285 0.0000 4 16 3.9033 0.6304 0.0082 5 6 3.5606 -1.0573 0.0008 6 8 4.3673 -1.9703 0.0021 7 7 2.2222 -1.1605 0.0004 8 6 1.5576 -2.4660 0.0008 9 6 1.3263 -2.9201 1.4435 10 6 0.6433 -4.2634 1.4440 11 8 0.3680 -4.8041 0.3939 12 7 0.3373 -4.8634 2.6114 13 6 -0.3273 -6.1690 2.6119 14 6 -0.5585 -6.6232 4.0545 15 1 0.3163 -6.4795 4.6888 16 6 -1.8605 -6.0830 4.6691 17 6 -2.0368 -7.4698 5.3140 18 1 -3.0655 -7.8299 5.3031 19 7 -1.4063 -7.5890 6.6311 20 6 -2.1808 -7.6323 7.7596 21 1 -3.2564 -7.5790 7.6786 22 6 -1.5834 -7.7457 9.0075 23 7 -2.3278 -7.7868 10.0921 24 14 0.2770 -7.8386 9.1474 25 1 0.8323 -6.4679 9.2814 26 1 0.6441 -8.6403 10.3421 27 1 0.8335 -8.4813 7.9298 28 6 -1.1770 -8.0265 4.1669 29 1 -0.3633 0.0003 1.0276 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 1.8152 2.1367 -0.0004 33 1 0.5997 -2.3864 -0.5130 34 1 2.1859 -3.1937 -0.5128 35 1 2.2843 -2.9998 1.9573 36 1 0.6980 -2.1924 1.9571 37 1 0.5570 -4.4308 3.4513 38 1 -1.2851 -6.0894 2.0978 39 1 0.3012 -6.8968 2.0985 40 1 -1.7030 -5.2817 5.3910 41 1 -2.6258 -5.8445 3.9306 42 1 -0.4403 -7.6371 6.7038 43 1 -1.9104 -7.8657 10.9641 44 1 -1.7552 -8.3203 3.2909 45 1 -0.4686 -8.7919 4.4840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316630778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -32.564665 kcal Electronic energy + Delta-G solvation = -26174.658882 eV Core-core repulsion = 22319.089858 eV Total energy + Delta-G solvation = -3855.569024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.15218 -40.91134 -39.92971 -38.71597 -36.12139 -34.98391 -34.46898 -32.71179 -32.22144 -29.71805 -28.37495 -26.46325 -26.05406 -25.25533 -24.14429 -23.05717 -21.67072 -21.24450 -20.13518 -19.56880 -19.06561 -18.63513 -17.74508 -17.34760 -16.97668 -16.86377 -16.56690 -16.15367 -16.07709 -15.50800 -15.25655 -15.11331 -14.84914 -14.65499 -14.58079 -14.53011 -14.19861 -13.97011 -13.74707 -13.35275 -13.16106 -13.08072 -13.00808 -12.67482 -12.43058 -12.28493 -12.25797 -12.06920 -11.90440 -11.66272 -11.53711 -11.25827 -11.11390 -10.93773 -10.84078 -10.59305 -10.09893 -9.30003 -8.98124 -8.03474 -5.36857 -0.13713 0.36238 0.85507 1.09826 1.36750 1.39897 1.47425 1.53454 1.64040 2.23392 2.46966 3.27072 3.48301 3.51174 3.59589 3.66933 3.73367 3.77388 3.96170 4.00880 4.18085 4.27043 4.29918 4.36857 4.42712 4.56834 4.64765 4.70615 4.76943 4.78202 4.79737 4.93312 4.97406 5.01724 5.08323 5.25567 5.30334 5.32289 5.47857 5.54847 5.72322 5.80495 6.21064 6.22085 6.46947 7.07266 7.14589 7.84511 8.02444 9.18001 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016025 B = 0.001947 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.818793 B =14379.020920 C =14944.366272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.092 3.908 3 C -0.223 4.223 4 S -0.006 6.006 5 C 0.460 3.540 6 O -0.522 6.522 7 N -0.529 5.529 8 C 0.118 3.882 9 C -0.147 4.147 10 C 0.520 3.480 11 O -0.580 6.580 12 N -0.717 5.717 13 C 0.138 3.862 14 C -0.106 4.106 15 H 0.087 0.913 16 C -0.151 4.151 17 C 0.144 3.856 18 H 0.057 0.943 19 N -0.734 5.734 20 C -0.231 4.231 21 H 0.058 0.942 22 C -0.065 4.065 23 N -0.984 5.984 24 Si 0.955 3.045 25 H -0.276 1.276 26 H -0.299 1.299 27 H -0.252 1.252 28 C -0.135 4.135 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.413 0.587 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.107 0.893 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 20.819 -24.861 33.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.360 4.360 4 S 0.237 5.763 5 C 0.143 3.857 6 O -0.406 6.406 7 N -0.249 5.249 8 C -0.007 4.007 9 C -0.188 4.188 10 C 0.306 3.694 11 O -0.461 6.461 12 N -0.368 5.368 13 C 0.015 3.985 14 C -0.125 4.125 15 H 0.106 0.894 16 C -0.191 4.191 17 C 0.034 3.966 18 H 0.076 0.924 19 N -0.376 5.376 20 C -0.362 4.362 21 H 0.076 0.924 22 C -0.257 4.257 23 N -0.634 5.634 24 Si 0.782 3.218 25 H -0.202 1.202 26 H -0.225 1.225 27 H -0.177 1.177 28 C -0.174 4.174 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.244 0.756 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.249 0.751 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.125 0.875 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.232 20.502 -25.454 33.705 hybrid contribution 0.110 -1.028 1.191 1.577 sum 8.343 19.475 -24.263 32.211 Atomic orbital electron populations 1.20978 0.83925 1.05807 1.05367 1.20014 0.97345 0.83895 1.00480 1.25432 0.90645 1.02784 1.17119 1.85266 1.11398 0.99407 1.80260 1.22020 0.84362 0.96292 0.82989 1.90954 1.50044 1.44188 1.55428 1.46176 1.05776 1.08692 1.64237 1.21566 1.00061 0.82003 0.97071 1.21905 1.03159 0.94991 0.98735 1.20609 0.78184 0.87163 0.83423 1.90715 1.55709 1.67215 1.32433 1.45998 1.60429 1.21443 1.08926 1.21313 0.97420 0.83706 0.96061 1.22572 0.97968 0.97232 0.94715 0.89433 1.23708 0.97158 0.98613 0.99640 1.21400 0.95907 0.95711 0.83560 0.92443 1.42450 1.04612 1.88722 1.01809 1.19065 0.91203 1.40762 0.85164 0.92448 1.25509 1.02485 1.02739 0.94933 1.69877 1.36235 1.59377 0.97924 0.85417 0.80834 0.78025 0.77531 1.20217 1.22548 1.17690 1.23370 0.99315 0.95738 0.99013 0.88147 0.86768 0.90343 0.75621 0.86112 0.90501 0.88497 0.85146 0.75066 0.91018 0.92017 0.92669 0.88797 0.80044 0.93353 0.87490 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.18 9.70 71.24 0.69 0.51 16 2 C 0.09 0.78 6.59 40.71 0.27 1.04 16 3 C -0.22 -1.63 11.24 66.67 0.75 -0.88 16 4 S -0.01 -0.10 22.97 -56.49 -1.30 -1.40 16 5 C 0.46 9.83 8.27 129.88 1.07 10.90 16 6 O -0.52 -15.50 17.55 -4.77 -0.08 -15.59 16 7 N -0.53 -7.88 2.60 -643.43 -1.68 -9.55 16 8 C 0.12 1.78 4.56 86.38 0.39 2.18 16 9 C -0.15 -1.96 6.02 29.85 0.18 -1.78 16 10 C 0.52 9.95 7.83 87.66 0.69 10.63 16 11 O -0.58 -15.41 15.98 -3.04 -0.05 -15.46 16 12 N -0.72 -12.58 5.56 -463.06 -2.57 -15.15 16 13 C 0.14 2.80 5.50 86.38 0.47 3.27 16 14 C -0.11 -2.44 3.63 -10.27 -0.04 -2.48 16 15 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 16 C -0.15 -4.07 7.44 31.18 0.23 -3.84 16 17 C 0.14 4.94 4.57 45.58 0.21 5.15 16 18 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 19 N -0.73 -32.38 5.11 -320.15 -1.64 -34.01 16 20 C -0.23 -12.79 10.45 84.03 0.88 -11.91 16 21 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 22 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 23 N -0.98 -62.22 13.97 21.65 0.30 -61.92 16 24 Si 0.95 44.33 27.74 68.60 1.90 46.23 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.25 -10.53 6.52 99.48 0.65 -9.88 16 28 C -0.14 -3.50 7.39 31.12 0.23 -3.27 16 29 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.11 -0.26 8.10 -2.39 -0.02 -0.27 16 31 H 0.08 0.21 6.19 -2.38 -0.01 0.20 16 32 H 0.23 -0.01 8.06 -2.91 -0.02 -0.03 16 33 H 0.12 1.40 6.08 -2.39 -0.01 1.39 16 34 H 0.08 1.61 7.76 -2.39 -0.02 1.59 16 35 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.41 5.73 8.47 -92.71 -0.79 4.94 16 38 H 0.07 1.47 7.88 -2.39 -0.02 1.45 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 2.16 7.92 -2.39 -0.02 2.14 16 42 H 0.37 15.44 5.76 -92.71 -0.53 14.90 16 43 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.11 2.27 8.10 -2.39 -0.02 2.25 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -78.73 386.68 1.03 -77.70 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.35 Total: 22.91 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.50 Total: 6.23 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -5.58 Total: -120.63 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.13 Total: -31.05 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.30 Total: -1.40 kcal Total: -78.73 1.03 -77.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316630778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.134 kcal (2) G-P(sol) polarization free energy of solvation -78.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds