Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30245 * 125.62401 * 2 1 4 4 C 1.34481 * 108.70701 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.16865 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47078 * 275.02694 * 5 4 3 7 7 C 1.46852 * 110.99794 * 293.95239 * 6 5 4 8 8 C 1.53042 * 109.52121 * 174.16150 * 7 6 5 9 9 C 1.53114 * 109.27750 * 59.18064 * 8 7 6 10 10 C 1.53117 * 109.16170 * 302.34288 * 9 8 7 11 11 H 1.08992 * 109.50626 * 297.67587 * 10 9 8 12 12 N 1.46504 * 109.50491 * 177.59454 * 10 9 8 13 13 C 1.34779 * 119.99957 * 84.99952 * 12 10 9 14 14 O 1.21281 * 119.99517 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00222 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.27912 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 90.00172 * 21 19 17 23 23 H 1.48499 * 109.47026 * 210.00020 * 21 19 17 24 24 H 1.48496 * 109.47474 * 330.00056 * 21 19 17 25 25 C 1.46846 * 110.99902 * 169.74667 * 6 5 4 26 26 C 1.34337 * 107.66372 * 0.26429 * 4 3 2 27 27 O 1.33975 * 125.61607 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47262 * 89.99837 * 1 2 3 29 29 H 1.08996 * 109.47518 * 209.99958 * 1 2 3 30 30 H 1.09003 * 109.47145 * 330.00498 * 1 2 3 31 31 H 1.09000 * 109.47043 * 155.02564 * 5 4 3 32 32 H 1.09000 * 109.47146 * 35.02423 * 5 4 3 33 33 H 1.09000 * 109.46315 * 54.14574 * 7 6 5 34 34 H 1.08999 * 109.46197 * 294.17938 * 7 6 5 35 35 H 1.09000 * 109.50068 * 299.23711 * 8 7 6 36 36 H 1.08996 * 109.53240 * 179.14135 * 8 7 6 37 37 H 1.08998 * 109.52274 * 182.43772 * 9 8 7 38 38 H 1.08998 * 109.57442 * 62.28478 * 9 8 7 39 39 H 0.96999 * 120.00526 * 265.00217 * 12 10 9 40 40 H 1.09005 * 109.46836 * 60.00415 * 15 13 12 41 41 H 1.08996 * 109.47837 * 300.00838 * 15 13 12 42 42 H 0.97001 * 120.00425 * 359.71679 * 20 19 17 43 43 H 1.08995 * 109.46522 * 65.82261 * 25 6 5 44 44 H 1.08996 * 109.46068 * 305.84964 * 25 6 5 45 45 H 1.07995 * 126.43907 * 179.73503 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0587 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 4.7571 1.5725 -0.0013 6 7 5.0750 1.9634 -1.3812 7 6 5.5091 0.8033 -2.1701 8 6 5.6910 1.2180 -3.6320 9 6 6.7355 2.3345 -3.7144 10 6 6.2828 3.5115 -2.8459 11 1 5.3432 3.9077 -3.2310 12 7 7.3043 4.5613 -2.8737 13 6 7.3118 5.4680 -3.8709 14 8 6.4727 5.4150 -4.7449 15 6 8.3622 6.5482 -3.8992 16 16 8.1066 7.6005 -5.3495 17 6 9.4333 8.7405 -5.1380 18 1 10.0985 8.6442 -4.2926 19 6 9.6242 9.7617 -6.0585 20 7 8.8108 9.8818 -7.0864 21 14 11.0303 10.9708 -5.8339 22 1 12.2398 10.4573 -6.5258 23 1 10.6501 12.2850 -6.4113 24 1 11.3189 11.1311 -4.3861 25 6 6.0837 3.0303 -1.4068 26 6 3.5697 -0.6759 -0.0068 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.6073 1.0460 0.4322 32 1 4.5424 2.4637 0.5884 33 1 4.7555 0.0183 -2.1063 34 1 6.4553 0.4308 -1.7777 35 1 4.7417 1.5776 -4.0290 36 1 6.0278 0.3608 -4.2148 37 1 6.8368 2.6629 -4.7488 38 1 7.6953 1.9640 -3.3543 39 1 7.9752 4.6038 -2.1745 40 1 9.3509 6.0922 -3.9504 41 1 8.2870 7.1519 -2.9948 42 1 8.0805 9.2541 -7.2029 43 1 7.0273 2.6474 -1.0181 44 1 5.7475 3.8628 -0.7888 45 1 4.4468 -1.3059 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316937029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -19.337616 kcal Electronic energy + Delta-G solvation = -26207.260650 eV Core-core repulsion = 22352.265194 eV Total energy + Delta-G solvation = -3854.995457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.70580 -40.00931 -38.56716 -35.72662 -34.58252 -33.25386 -32.51710 -32.24755 -30.59065 -28.90420 -28.09536 -26.75468 -24.83933 -23.55179 -23.11623 -21.89087 -21.29375 -20.33839 -20.07235 -18.32203 -17.51437 -17.25121 -16.69001 -16.47025 -15.67757 -15.53527 -15.09820 -15.07809 -14.56614 -14.46447 -14.21345 -14.00580 -13.83889 -13.73066 -13.53655 -13.27559 -13.11473 -12.87475 -12.80649 -12.38082 -12.17987 -12.04782 -11.83346 -11.58574 -11.46101 -11.12146 -10.96037 -10.90091 -10.82622 -10.70057 -10.18562 -9.57353 -9.46606 -9.18364 -9.01661 -8.93433 -8.68575 -8.20771 -6.65662 -6.61250 -3.98887 1.04892 2.21688 2.37531 2.88628 3.01727 3.33499 3.39415 3.43064 3.56319 3.59552 3.84044 4.25753 4.34517 4.41240 4.48933 4.65388 4.72453 4.81266 4.87743 4.92742 4.99234 5.02521 5.06751 5.12089 5.21631 5.23401 5.26700 5.36066 5.40840 5.52096 5.52445 5.53170 5.58276 5.71579 5.78989 5.89192 5.90627 6.02520 6.11305 6.18585 6.49859 6.64493 6.75129 7.41192 7.64725 7.93324 8.51138 8.54662 9.28144 10.82764 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.001761 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.704991 B =15894.084758 C =16031.205265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.188 3.812 3 N -0.465 5.465 4 C 0.003 3.997 5 C 0.137 3.863 6 N -0.527 5.527 7 C 0.052 3.948 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.152 3.848 11 H 0.097 0.903 12 N -0.734 5.734 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.131 4.131 16 S -0.115 6.115 17 C -0.608 4.608 18 H 0.066 0.934 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.087 2.913 22 H -0.284 1.284 23 H -0.280 1.280 24 H -0.287 1.287 25 C 0.054 3.946 26 C -0.077 4.077 27 O -0.204 6.204 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.278 0.722 43 H 0.040 0.960 44 H 0.084 0.916 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 -25.268 18.512 32.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.019 4.019 3 N -0.195 5.195 4 C -0.117 4.117 5 C 0.009 3.991 6 N -0.253 5.253 7 C -0.076 4.076 8 C -0.151 4.151 9 C -0.171 4.171 10 C 0.046 3.954 11 H 0.115 0.885 12 N -0.388 5.388 13 C 0.319 3.681 14 O -0.388 6.388 15 C -0.282 4.282 16 S 0.111 5.889 17 C -0.756 4.756 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.519 5.519 21 Si 0.913 3.087 22 H -0.211 1.211 23 H -0.205 1.205 24 H -0.213 1.213 25 C -0.074 4.074 26 C -0.148 4.148 27 O -0.091 6.091 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -11.450 -23.252 16.159 30.543 hybrid contribution 1.917 -2.315 2.509 3.915 sum -9.533 -25.567 18.669 33.062 Atomic orbital electron populations 1.20267 0.81284 1.05079 1.04857 1.26398 0.96623 0.78564 1.00285 1.70370 1.01534 1.29990 1.17645 1.21505 0.93156 0.92134 1.04907 1.20262 0.91066 0.97763 0.90030 1.61665 1.42904 1.09607 1.11075 1.22207 0.98601 0.92485 0.94277 1.21521 1.00192 0.98319 0.95098 1.21997 0.98317 0.95227 1.01549 1.20803 0.92943 0.87441 0.94204 0.88456 1.45968 1.33308 1.30824 1.28686 1.20256 0.85480 0.81422 0.80951 1.90707 1.38391 1.73151 1.36599 1.23318 1.00014 0.98944 1.05931 1.84832 1.43164 1.32474 1.28453 1.23735 1.16890 1.18106 1.16858 0.91599 1.26055 1.01701 0.97709 0.92098 1.70763 1.15671 1.37484 1.27942 0.83287 0.74139 0.75636 0.75607 1.21077 1.20497 1.21316 1.22258 0.93404 0.94709 0.97028 1.24749 0.85046 0.96123 1.08910 1.84441 1.16830 1.37889 1.69938 0.88807 0.89425 0.88020 0.92868 0.88673 0.90813 0.94671 0.90736 0.91129 0.90710 0.92133 0.76982 0.89024 0.88968 0.90940 0.94197 0.89755 0.77179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.19 1.66 8.34 -12.95 -0.11 1.55 16 3 N -0.47 -5.18 11.29 -7.36 -0.08 -5.26 16 4 C 0.00 0.03 5.87 -82.81 -0.49 -0.45 16 5 C 0.14 1.12 5.51 -4.98 -0.03 1.09 16 6 N -0.53 -5.04 4.65 -236.11 -1.10 -6.14 16 7 C 0.05 0.44 5.29 -3.83 -0.02 0.42 16 8 C -0.11 -1.10 6.09 -26.65 -0.16 -1.26 16 9 C -0.13 -1.52 5.58 -26.61 -0.15 -1.67 16 10 C 0.15 1.86 2.62 -67.85 -0.18 1.68 16 11 H 0.10 1.51 7.58 -51.93 -0.39 1.11 16 12 N -0.73 -9.75 5.08 -53.73 -0.27 -10.02 16 13 C 0.53 9.93 7.81 -10.99 -0.09 9.84 16 14 O -0.51 -11.71 15.53 5.56 0.09 -11.62 16 15 C -0.13 -2.65 6.16 36.00 0.22 -2.43 16 16 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 17 C -0.61 -17.64 9.50 30.94 0.29 -17.35 16 18 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 19 C 0.03 1.02 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.72 13.67 55.49 0.76 -26.96 16 21 Si 1.09 25.13 29.92 -169.99 -5.09 20.05 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 25 C 0.05 0.51 4.93 -3.83 -0.02 0.49 16 26 C -0.08 -0.58 10.88 29.36 0.32 -0.26 16 27 O -0.20 -1.78 10.78 5.35 0.06 -1.72 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.09 0.81 7.98 -51.93 -0.41 0.39 16 33 H 0.07 0.61 6.22 -51.93 -0.32 0.29 16 34 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.02 8.60 -40.82 -0.35 3.67 16 40 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 41 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.28 8.91 7.13 -40.82 -0.29 8.62 16 43 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 45 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -37.58 385.46 -8.94 -46.53 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.89 Total: 1.89 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.12 Total: -7.30 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.69 Total: -48.39 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.14 Total: -13.34 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.09 Total: 20.05 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.58 -8.94 -46.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316937029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.189 kcal (2) G-P(sol) polarization free energy of solvation -37.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds