Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30245 * 125.62401 * 2 1 4 4 C 1.34481 * 108.70701 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.16865 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47078 * 275.02694 * 5 4 3 7 7 C 1.46852 * 110.99794 * 293.95239 * 6 5 4 8 8 C 1.53042 * 109.52121 * 174.16150 * 7 6 5 9 9 C 1.53114 * 109.27750 * 59.18064 * 8 7 6 10 10 C 1.53117 * 109.16170 * 302.34288 * 9 8 7 11 11 H 1.08992 * 109.50626 * 297.67587 * 10 9 8 12 12 N 1.46504 * 109.50491 * 177.59454 * 10 9 8 13 13 C 1.34779 * 119.99957 * 84.99952 * 12 10 9 14 14 O 1.21281 * 119.99517 * 0.02562 * 13 12 10 15 15 C 1.50693 * 120.00222 * 179.97438 * 13 12 10 16 16 S 1.81002 * 109.47406 * 180.02562 * 15 13 12 17 17 C 1.76199 * 100.00182 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99820 * 0.27912 * 19 17 16 21 21 Si 1.86800 * 119.99759 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 90.00172 * 21 19 17 23 23 H 1.48499 * 109.47026 * 210.00020 * 21 19 17 24 24 H 1.48496 * 109.47474 * 330.00056 * 21 19 17 25 25 C 1.46846 * 110.99902 * 169.74667 * 6 5 4 26 26 C 1.34337 * 107.66372 * 0.26429 * 4 3 2 27 27 O 1.33975 * 125.61607 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47262 * 89.99837 * 1 2 3 29 29 H 1.08996 * 109.47518 * 209.99958 * 1 2 3 30 30 H 1.09003 * 109.47145 * 330.00498 * 1 2 3 31 31 H 1.09000 * 109.47043 * 155.02564 * 5 4 3 32 32 H 1.09000 * 109.47146 * 35.02423 * 5 4 3 33 33 H 1.09000 * 109.46315 * 54.14574 * 7 6 5 34 34 H 1.08999 * 109.46197 * 294.17938 * 7 6 5 35 35 H 1.09000 * 109.50068 * 299.23711 * 8 7 6 36 36 H 1.08996 * 109.53240 * 179.14135 * 8 7 6 37 37 H 1.08998 * 109.52274 * 182.43772 * 9 8 7 38 38 H 1.08998 * 109.57442 * 62.28478 * 9 8 7 39 39 H 0.96999 * 120.00526 * 265.00217 * 12 10 9 40 40 H 1.09005 * 109.46836 * 60.00415 * 15 13 12 41 41 H 1.08996 * 109.47837 * 300.00838 * 15 13 12 42 42 H 0.97001 * 120.00425 * 359.71679 * 20 19 17 43 43 H 1.08995 * 109.46522 * 65.82261 * 25 6 5 44 44 H 1.08996 * 109.46068 * 305.84964 * 25 6 5 45 45 H 1.07995 * 126.43907 * 179.73503 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0587 0.0000 4 6 3.5522 0.6674 -0.0006 5 6 4.7571 1.5725 -0.0013 6 7 5.0750 1.9634 -1.3812 7 6 5.5091 0.8033 -2.1701 8 6 5.6910 1.2180 -3.6320 9 6 6.7355 2.3345 -3.7144 10 6 6.2828 3.5115 -2.8459 11 1 5.3432 3.9077 -3.2310 12 7 7.3043 4.5613 -2.8737 13 6 7.3118 5.4680 -3.8709 14 8 6.4727 5.4150 -4.7449 15 6 8.3622 6.5482 -3.8992 16 16 8.1066 7.6005 -5.3495 17 6 9.4333 8.7405 -5.1380 18 1 10.0985 8.6442 -4.2926 19 6 9.6242 9.7617 -6.0585 20 7 8.8108 9.8818 -7.0864 21 14 11.0303 10.9708 -5.8339 22 1 12.2398 10.4573 -6.5258 23 1 10.6501 12.2850 -6.4113 24 1 11.3189 11.1311 -4.3861 25 6 6.0837 3.0303 -1.4068 26 6 3.5697 -0.6759 -0.0068 27 8 2.2872 -1.0891 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.6073 1.0460 0.4322 32 1 4.5424 2.4637 0.5884 33 1 4.7555 0.0183 -2.1063 34 1 6.4553 0.4308 -1.7777 35 1 4.7417 1.5776 -4.0290 36 1 6.0278 0.3608 -4.2148 37 1 6.8368 2.6629 -4.7488 38 1 7.6953 1.9640 -3.3543 39 1 7.9752 4.6038 -2.1745 40 1 9.3509 6.0922 -3.9504 41 1 8.2870 7.1519 -2.9948 42 1 8.0805 9.2541 -7.2029 43 1 7.0273 2.6474 -1.0181 44 1 5.7475 3.8628 -0.7888 45 1 4.4468 -1.3059 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316937029.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -49.717917 kcal Electronic energy + Delta-G solvation = -26208.578039 eV Core-core repulsion = 22352.265194 eV Total energy + Delta-G solvation = -3856.312845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.30226 -41.16126 -39.67776 -36.58290 -35.51268 -34.74727 -34.12575 -32.83180 -31.84682 -29.85842 -28.99703 -27.36047 -27.07138 -24.33997 -24.01067 -22.53933 -22.02739 -21.59068 -21.00891 -20.36828 -18.22064 -18.00995 -17.87977 -17.58250 -16.78680 -16.55475 -16.22511 -16.15123 -15.73520 -15.66732 -15.25801 -14.99741 -14.92973 -14.77400 -14.62319 -14.46723 -13.94791 -13.87928 -13.73017 -13.60693 -13.52892 -13.24879 -12.74821 -12.73679 -12.45693 -12.18237 -11.95127 -11.92814 -11.88766 -11.62564 -11.53909 -11.47522 -11.10531 -11.02088 -10.32203 -10.18764 -9.74783 -9.31787 -8.92720 -8.87288 -6.27861 0.48093 1.18147 1.50534 1.51629 1.59133 1.61627 1.79810 1.87374 2.11430 2.34505 2.98585 3.02407 3.10435 3.15707 3.61194 3.73036 3.82357 3.85601 3.94279 3.97103 4.14594 4.17587 4.26316 4.34956 4.37231 4.45575 4.50606 4.56957 4.61831 4.64303 4.64845 4.78388 4.82870 4.88558 4.97669 5.00134 5.06594 5.16975 5.25244 5.35132 5.40329 5.64502 5.97508 6.03528 6.14470 6.43421 6.81616 7.06313 7.16840 8.50702 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030045 B = 0.001761 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.704991 B =15894.084758 C =16031.205265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.180 3.820 3 N -0.510 5.510 4 C -0.024 4.024 5 C 0.142 3.858 6 N -0.550 5.550 7 C 0.058 3.942 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.152 3.848 11 H 0.058 0.942 12 N -0.706 5.706 13 C 0.535 3.465 14 O -0.565 6.565 15 C -0.108 4.108 16 S -0.198 6.198 17 C -0.613 4.613 18 H 0.076 0.924 19 C -0.020 4.020 20 N -0.914 5.914 21 Si 1.140 2.860 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.262 1.262 25 C 0.065 3.935 26 C -0.066 4.066 27 O -0.212 6.212 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.418 0.582 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.260 0.740 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -27.173 21.300 35.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.027 4.027 3 N -0.240 5.240 4 C -0.143 4.143 5 C 0.014 3.986 6 N -0.276 5.276 7 C -0.069 4.069 8 C -0.148 4.148 9 C -0.165 4.165 10 C 0.046 3.954 11 H 0.076 0.924 12 N -0.359 5.359 13 C 0.321 3.679 14 O -0.443 6.443 15 C -0.260 4.260 16 S 0.028 5.972 17 C -0.760 4.760 18 H 0.094 0.906 19 C -0.223 4.223 20 N -0.549 5.549 21 Si 0.957 3.043 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.186 1.186 25 C -0.063 4.063 26 C -0.137 4.137 27 O -0.099 6.099 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.534 -25.210 19.014 32.984 hybrid contribution 1.240 -1.851 1.711 2.810 sum -8.294 -27.062 20.725 35.081 Atomic orbital electron populations 1.20465 0.78958 1.06287 1.05736 1.27129 0.97926 0.78210 0.99418 1.70349 1.02911 1.31503 1.19276 1.21794 0.92976 0.93239 1.06310 1.20269 0.91665 0.97660 0.88969 1.61561 1.43429 1.10202 1.12417 1.22161 0.99893 0.92086 0.92751 1.21495 0.98326 0.98136 0.96828 1.21926 0.99972 0.95348 0.99269 1.20854 0.90769 0.87004 0.96724 0.92415 1.45670 1.33527 1.29393 1.27352 1.20018 0.84535 0.81868 0.81489 1.90702 1.40202 1.74480 1.38888 1.23220 1.01660 0.98384 1.02706 1.85110 1.43823 1.34656 1.33569 1.24062 1.16842 1.18145 1.16996 0.90573 1.27861 1.03501 0.99718 0.91245 1.70886 1.16450 1.37849 1.29718 0.82677 0.71293 0.73105 0.77179 1.19226 1.20505 1.18623 1.22112 0.94901 0.95021 0.94263 1.25394 0.85475 0.95979 1.06879 1.84459 1.17460 1.38009 1.69959 0.87965 0.87255 0.87737 0.89908 0.89591 0.90474 0.92167 0.93332 0.89406 0.94203 0.89879 0.74506 0.86825 0.86936 0.92887 0.91216 0.89804 0.73676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.18 3.04 8.34 88.34 0.74 3.78 16 3 N -0.51 -11.20 11.29 -291.98 -3.30 -14.50 16 4 C -0.02 -0.41 5.87 41.26 0.24 -0.17 16 5 C 0.14 2.00 5.51 85.55 0.47 2.47 16 6 N -0.55 -9.48 4.65 -900.91 -4.19 -13.67 16 7 C 0.06 0.83 5.29 86.33 0.46 1.29 16 8 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 9 C -0.13 -2.80 5.58 30.67 0.17 -2.62 16 10 C 0.15 3.63 2.62 45.04 0.12 3.74 16 11 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 12 N -0.71 -17.70 5.08 -442.29 -2.25 -19.95 16 13 C 0.54 19.91 7.81 87.65 0.68 20.59 16 14 O -0.56 -26.79 15.53 -3.03 -0.05 -26.84 16 15 C -0.11 -4.29 6.16 71.23 0.44 -3.85 16 16 S -0.20 -11.06 19.60 -56.49 -1.11 -12.17 16 17 C -0.61 -35.58 9.50 67.96 0.65 -34.93 16 18 H 0.08 4.13 7.80 -2.91 -0.02 4.10 16 19 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 20 N -0.91 -58.67 13.67 21.65 0.30 -58.38 16 21 Si 1.14 49.60 29.92 68.60 2.05 51.65 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 25 C 0.07 1.07 4.93 86.33 0.43 1.49 16 26 C -0.07 -0.84 10.88 66.93 0.73 -0.11 16 27 O -0.21 -3.37 10.78 -3.78 -0.04 -3.41 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 32 H 0.09 1.34 7.98 -2.39 -0.02 1.32 16 33 H 0.08 1.07 6.22 -2.39 -0.01 1.06 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.42 7.11 8.60 -92.71 -0.80 6.31 16 40 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 41 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 42 H 0.26 17.42 7.13 -92.71 -0.66 16.76 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 1.40 8.01 -2.39 -0.02 1.38 16 45 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 Total: -1.00 -86.72 385.46 -1.75 -88.46 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.31 Total: 19.38 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 6.52 Total: -10.59 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -9.43 Total: -106.49 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.09 Total: -30.24 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -1.11 Total: -12.17 kcal Total: -86.72 -1.75 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316937029.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.743 kcal (2) G-P(sol) polarization free energy of solvation -86.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds