Wall clock time and date at job start Sat Apr 11 2020 05:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.77222 * 127.33988 * 2 1 4 4 C 1.72208 * 94.84656 * 179.80763 * 3 2 1 5 5 O 1.21830 * 127.05717 * 180.19931 * 4 3 2 6 6 N 1.34244 * 105.88548 * 0.31929 * 4 3 2 7 7 C 1.46501 * 121.38087 * 179.87668 * 6 4 3 8 8 C 1.50700 * 109.47343 * 269.72233 * 7 6 4 9 9 O 1.21281 * 119.99845 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00114 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00147 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47283 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.63712 * 303.31622 * 12 11 10 14 14 C 1.55152 * 110.87348 * 180.02562 * 12 11 10 15 15 C 1.54908 * 101.58402 * 206.06519 * 14 12 11 16 16 N 1.47421 * 104.83171 * 37.01059 * 15 14 12 17 17 C 1.36930 * 125.65196 * 155.92330 * 16 15 14 18 18 H 1.08010 * 119.99884 * 353.83921 * 17 16 15 19 19 C 1.38814 * 120.00493 * 173.84367 * 17 16 15 20 20 N 1.31617 * 119.99686 * 6.82718 * 19 17 16 21 21 Si 1.86805 * 120.00178 * 186.82446 * 19 17 16 22 22 H 1.48503 * 109.46880 * 94.98351 * 21 19 17 23 23 H 1.48497 * 109.47026 * 214.98542 * 21 19 17 24 24 H 1.48496 * 109.47076 * 334.98826 * 21 19 17 25 25 C 1.47028 * 108.70242 * 335.87288 * 16 15 14 26 26 C 1.32566 * 127.33978 * 179.97438 * 2 1 3 27 27 C 1.50702 * 121.64590 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47561 * 269.99781 * 1 2 3 29 29 H 1.08995 * 109.47183 * 30.00318 * 1 2 3 30 30 H 1.09011 * 109.47226 * 150.00169 * 1 2 3 31 31 H 1.09002 * 109.46995 * 149.71893 * 7 6 4 32 32 H 1.09007 * 109.46737 * 29.72306 * 7 6 4 33 33 H 0.97002 * 119.99834 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.46788 * 60.00106 * 11 10 8 35 35 H 1.09006 * 109.46829 * 300.00424 * 11 10 8 36 36 H 1.09002 * 111.00809 * 324.14120 * 14 12 11 37 37 H 1.09004 * 111.00417 * 87.94876 * 14 12 11 38 38 H 1.09000 * 110.36815 * 155.84748 * 15 14 12 39 39 H 1.08998 * 110.36563 * 278.17149 * 15 14 12 40 40 H 0.97006 * 119.99480 * 179.97438 * 20 19 17 41 41 H 1.08998 * 109.88132 * 241.64401 * 25 16 15 42 42 H 1.08998 * 109.88414 * 120.48194 * 25 16 15 43 43 H 1.09003 * 109.47059 * 270.02160 * 27 26 2 44 44 H 1.08997 * 109.47320 * 30.02161 * 27 26 2 45 45 H 1.08999 * 109.46852 * 150.02304 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5819 1.4090 0.0000 4 6 4.0344 0.4839 0.0058 5 8 5.1759 0.9096 0.0113 6 7 3.6507 -0.8025 0.0002 7 6 4.6312 -1.8910 0.0001 8 6 4.9675 -2.2642 -1.4207 9 8 4.4404 -1.6783 -2.3425 10 7 5.8547 -3.2484 -1.6670 11 6 6.1812 -3.6116 -3.0481 12 6 7.2053 -4.7483 -3.0482 13 1 8.0959 -4.4631 -2.4883 14 6 7.5753 -5.1590 -4.4979 15 6 8.0067 -6.6340 -4.3028 16 7 7.0914 -7.1621 -3.2749 17 6 6.7649 -8.4801 -3.0981 18 1 7.1105 -9.2214 -3.8035 19 6 5.9898 -8.8636 -2.0123 20 7 5.4567 -7.9501 -1.2289 21 14 5.7031 -10.6762 -1.6630 22 1 6.6987 -11.1522 -0.6693 23 1 4.3335 -10.8653 -1.1211 24 1 5.8494 -11.4518 -2.9208 25 6 6.5880 -6.0392 -2.4701 26 6 2.3110 -1.0540 0.0005 27 6 1.7706 -2.4608 0.0017 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3634 -0.8901 -0.5139 31 1 4.2132 -2.7566 0.5140 32 1 5.5357 -1.5653 0.5140 33 1 6.2766 -3.7168 -0.9297 34 1 6.5986 -2.7460 -3.5624 35 1 5.2766 -3.9379 -3.5615 36 1 6.7099 -5.0889 -5.1568 37 1 8.4013 -4.5564 -4.8759 38 1 7.8922 -7.1890 -5.2339 39 1 9.0382 -6.6846 -3.9544 40 1 4.9147 -8.2181 -0.4703 41 1 6.8923 -6.1624 -1.4307 42 1 5.5011 -5.9929 -2.5373 43 1 1.6403 -2.7990 1.0297 44 1 0.8096 -2.4813 -0.5121 45 1 2.4712 -3.1195 -0.5116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317534930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:13 Heat of formation + Delta-G solvation = -17.021210 kcal Electronic energy + Delta-G solvation = -27368.424835 eV Core-core repulsion = 23513.529825 eV Total energy + Delta-G solvation = -3854.895010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.35875 -39.29369 -37.81580 -37.60974 -34.62042 -33.76792 -32.60598 -30.77634 -29.95277 -29.32575 -27.93813 -25.89195 -25.09937 -24.02016 -23.09380 -20.87037 -20.18264 -19.90431 -19.56628 -18.37728 -17.61464 -17.14054 -16.87271 -15.99386 -15.81090 -15.45305 -15.23910 -14.88735 -14.30035 -14.15004 -14.06670 -13.86775 -13.77295 -13.50098 -13.24563 -13.11227 -12.77869 -12.52523 -12.45217 -12.16990 -11.87424 -11.67316 -11.63919 -11.54567 -11.08907 -10.95095 -10.85772 -10.64718 -10.21856 -10.13526 -10.09725 -10.01841 -9.97148 -9.69781 -9.41107 -8.91530 -8.66496 -7.99838 -6.89890 -5.81492 -3.12242 0.81219 1.24167 1.59307 1.99498 2.52202 2.57598 3.29079 3.34501 3.40548 3.41546 4.28031 4.43773 4.57392 4.65264 4.79644 4.89271 4.93716 5.12847 5.13215 5.20091 5.32165 5.33467 5.33983 5.45944 5.49306 5.61654 5.62133 5.63823 5.86229 5.99107 6.01501 6.02990 6.26181 6.33007 6.51345 6.55254 6.56021 6.62926 6.88781 7.16523 7.44562 7.47064 7.55016 7.71346 8.17130 8.20195 9.14292 9.74850 10.41511 11.31275 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015348 B = 0.002682 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.913499 B =10435.912815 C =11678.831677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.211 4.211 3 S 0.000 6.000 4 C 0.489 3.511 5 O -0.475 6.475 6 N -0.513 5.513 7 C 0.079 3.921 8 C 0.497 3.503 9 O -0.534 6.534 10 N -0.713 5.713 11 C 0.139 3.861 12 C -0.134 4.134 13 H 0.072 0.928 14 C -0.122 4.122 15 C 0.133 3.867 16 N -0.607 5.607 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.186 3.814 26 C 0.110 3.890 27 C -0.103 4.103 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.406 0.594 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.019 0.981 40 H 0.251 0.749 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.566 14.430 4.873 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.331 4.331 3 S 0.243 5.757 4 C 0.171 3.829 5 O -0.355 6.355 6 N -0.233 5.233 7 C -0.050 4.050 8 C 0.281 3.719 9 O -0.410 6.410 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.153 4.153 13 H 0.091 0.909 14 C -0.161 4.161 15 C 0.007 3.993 16 N -0.334 5.334 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C 0.061 3.939 26 C 0.000 4.000 27 C -0.162 4.162 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.241 0.759 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.513 16.321 4.334 18.482 hybrid contribution 0.509 -2.620 0.543 2.723 sum -7.004 13.701 4.877 16.142 Atomic orbital electron populations 1.20100 0.85715 1.03358 1.02709 1.23405 0.99610 0.91926 1.18137 1.84959 0.97944 1.11359 1.81400 1.21470 0.94593 0.84619 0.82221 1.90955 1.19292 1.71776 1.53450 1.45525 1.05812 1.06969 1.64947 1.21743 0.94922 0.91667 0.96709 1.20603 0.79904 0.80429 0.90977 1.90734 1.52012 1.52646 1.45648 1.45916 1.43821 1.36455 1.10214 1.21368 0.98722 0.96797 0.81559 1.22774 0.97703 0.96660 0.98191 0.90918 1.22694 1.00528 0.97527 0.95368 1.21561 0.93352 0.91632 0.92757 1.44483 1.50767 1.03167 1.34974 1.19092 1.27379 0.82206 1.06814 0.90416 1.24791 1.00134 0.97783 0.97685 1.69953 1.37503 1.30769 1.18752 0.86114 0.77143 0.84555 0.78080 1.21636 1.21778 1.20650 1.21196 0.96878 0.81820 0.94017 1.19246 0.81745 0.98319 1.00704 1.20808 1.02568 0.88992 1.03827 0.90711 0.90927 0.90233 0.85579 0.85794 0.75874 0.92096 0.91259 0.91450 0.91930 0.94210 0.96297 0.93893 0.93865 0.93654 0.89404 0.88958 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.10 36.00 0.36 -0.02 16 2 C -0.21 -2.12 6.72 -36.22 -0.24 -2.36 16 3 S 0.00 0.00 22.97 -107.50 -2.47 -2.47 16 4 C 0.49 7.25 8.27 53.82 0.45 7.69 16 5 O -0.48 -8.34 17.55 5.07 0.09 -8.25 16 6 N -0.51 -6.56 2.09 -118.56 -0.25 -6.81 16 7 C 0.08 0.90 5.47 -5.19 -0.03 0.87 16 8 C 0.50 7.35 7.64 -10.99 -0.08 7.27 16 9 O -0.53 -9.95 16.43 5.56 0.09 -9.86 16 10 N -0.71 -10.08 5.40 -60.29 -0.33 -10.41 16 11 C 0.14 2.18 5.01 -4.04 -0.02 2.16 16 12 C -0.13 -2.25 3.01 -88.79 -0.27 -2.52 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.12 -2.01 6.54 -24.59 -0.16 -2.17 16 15 C 0.13 2.65 7.23 -2.53 -0.02 2.63 16 16 N -0.61 -14.89 3.39 -170.07 -0.58 -15.47 16 17 C -0.23 -6.13 10.26 -15.06 -0.15 -6.28 16 18 H 0.08 2.05 7.84 -52.48 -0.41 1.63 16 19 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 20 N -0.92 -25.40 10.36 55.49 0.58 -24.82 16 21 Si 0.91 21.36 29.56 -169.99 -5.02 16.33 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.19 4.10 4.66 -3.06 -0.01 4.09 16 26 C 0.11 1.19 6.59 -82.51 -0.54 0.65 16 27 C -0.10 -0.86 9.07 36.01 0.33 -0.53 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.43 6.77 -51.92 -0.35 0.08 16 31 H 0.13 1.06 6.83 -51.93 -0.35 0.71 16 32 H 0.12 1.27 7.80 -51.93 -0.40 0.87 16 33 H 0.41 5.07 8.33 -40.82 -0.34 4.73 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 36 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.25 6.71 8.31 -40.82 -0.34 6.37 16 41 H 0.04 1.04 7.36 -51.93 -0.38 0.66 16 42 H 0.05 1.12 7.17 -51.93 -0.37 0.75 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.64 6.69 -51.93 -0.35 0.29 16 45 H 0.08 0.77 6.70 -51.93 -0.35 0.43 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -34.40 380.16 -9.32 -43.72 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.67 Total: 1.14 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: -0.49 Total: 11.15 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.58 Total: -57.50 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.18 Total: -18.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.47 Total: -2.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.40 -9.32 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317534930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.703 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds