Wall clock time and date at job start Sat Apr 11 2020 05:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30262 * 125.61634 * 2 1 4 4 C 1.34477 * 108.70111 * 180.02562 * 3 2 1 5 5 C 1.34331 * 107.66462 * 0.02562 * 4 3 2 6 6 C 1.50704 * 126.43809 * 179.97438 * 5 4 3 7 7 N 1.46903 * 109.47306 * 89.99717 * 6 5 4 8 8 C 1.46899 * 111.00341 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47380 * 185.03458 * 8 7 6 10 10 H 1.09008 * 109.99927 * 305.62397 * 9 8 7 11 11 C 1.54321 * 109.77403 * 66.77260 * 9 8 7 12 12 C 1.55154 * 102.86121 * 141.88503 * 11 9 8 13 13 C 1.54906 * 101.58523 * 324.30432 * 12 11 9 14 14 N 1.47022 * 109.88327 * 184.52215 * 9 8 7 15 15 C 1.34775 * 125.64672 * 61.68274 * 14 9 8 16 16 O 1.21278 * 120.00122 * 354.78724 * 15 14 9 17 17 C 1.50700 * 119.99652 * 174.79228 * 15 14 9 18 18 S 1.81001 * 109.46915 * 179.97438 * 17 15 14 19 19 C 1.76200 * 100.00236 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00009 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99871 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47211 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47034 * 120.00017 * 23 21 19 26 26 H 1.48501 * 109.47192 * 239.99621 * 23 21 19 27 27 O 1.33965 * 125.62236 * 180.34166 * 2 1 3 28 28 H 1.08992 * 109.46944 * 89.97477 * 1 2 3 29 29 H 1.09001 * 109.46792 * 209.97649 * 1 2 3 30 30 H 1.09001 * 109.46855 * 329.96911 * 1 2 3 31 31 H 1.07998 * 126.16677 * 179.97438 * 4 3 2 32 32 H 1.08990 * 109.47419 * 329.99596 * 6 5 4 33 33 H 1.09004 * 109.46967 * 209.99223 * 6 5 4 34 34 H 1.00904 * 111.00034 * 303.95597 * 7 6 5 35 35 H 1.08999 * 109.46744 * 65.03760 * 8 7 6 36 36 H 1.09000 * 109.47110 * 305.03753 * 8 7 6 37 37 H 1.08998 * 110.92129 * 23.47006 * 11 9 8 38 38 H 1.08997 * 110.74285 * 260.22049 * 11 9 8 39 39 H 1.09003 * 110.99962 * 206.22861 * 12 11 9 40 40 H 1.09000 * 111.03850 * 82.39648 * 12 11 9 41 41 H 1.09001 * 110.36858 * 278.17674 * 13 12 11 42 42 H 1.08996 * 110.46130 * 155.89537 * 13 12 11 43 43 H 1.08999 * 109.47607 * 60.00099 * 17 15 14 44 44 H 1.08999 * 109.47519 * 299.99356 * 17 15 14 45 45 H 0.96994 * 120.00223 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6677 -0.0006 5 6 3.5698 -0.6755 -0.0015 6 6 4.7938 -1.5547 -0.0029 7 7 5.1926 -1.8413 1.3816 8 6 6.3849 -2.6985 1.4194 9 6 6.6950 -3.0772 2.8689 10 1 6.7823 -2.1779 3.4788 11 6 5.5753 -3.9833 3.4228 12 6 6.3552 -5.0022 4.2951 13 6 7.6560 -5.1834 3.4737 14 7 7.9474 -3.8451 2.9282 15 6 9.1616 -3.3976 2.5516 16 8 9.2718 -2.3072 2.0323 17 6 10.3824 -4.2524 2.7758 18 16 11.8482 -3.3819 2.1678 19 6 13.0902 -4.5733 2.5455 20 1 12.8180 -5.5065 3.0160 21 6 14.4186 -4.3120 2.2393 22 7 14.7505 -3.1744 1.6663 23 14 15.7351 -5.5754 2.6392 24 1 15.1067 -6.7609 3.2753 25 1 16.4203 -5.9891 1.3883 26 1 16.7253 -4.9802 3.5722 27 8 2.2873 -1.0889 -0.0065 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 4.4157 1.3164 -0.0011 32 1 5.6077 -1.0436 -0.5170 33 1 4.5693 -2.4892 -0.5172 34 1 5.3438 -0.9879 1.8984 35 1 7.2327 -2.1605 0.9952 36 1 6.2010 -3.6026 0.8390 37 1 5.0495 -4.4908 2.6141 38 1 4.8787 -3.4075 4.0321 39 1 5.8109 -5.9430 4.3776 40 1 6.5699 -4.5897 5.2809 41 1 7.4976 -5.8965 2.6647 42 1 8.4700 -5.5160 4.1177 43 1 10.2704 -5.1940 2.2383 44 1 10.4946 -4.4533 3.8412 45 1 15.6787 -2.9919 1.4520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319049008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:26 Heat of formation + Delta-G solvation = -9.818282 kcal Electronic energy + Delta-G solvation = -26117.088003 eV Core-core repulsion = 22262.505335 eV Total energy + Delta-G solvation = -3854.582667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.58021 -40.06083 -37.44561 -36.29822 -35.00693 -32.76376 -32.45401 -31.76667 -30.72857 -28.95493 -28.03731 -25.53990 -25.44894 -23.97626 -22.57106 -22.40732 -21.31344 -21.11152 -19.07112 -17.74035 -17.31365 -17.12803 -16.81375 -16.37804 -15.71177 -15.25181 -14.89133 -14.82819 -14.65056 -14.43559 -14.23712 -13.86421 -13.80725 -13.48991 -13.42099 -13.29902 -13.01919 -12.87904 -12.57570 -12.42710 -12.27305 -12.06830 -11.65830 -11.53692 -11.33725 -11.09184 -11.04755 -11.02783 -10.87764 -10.78238 -10.76828 -9.82768 -9.47805 -9.09721 -9.06845 -8.75869 -8.50089 -8.25841 -6.52949 -6.24242 -3.94923 1.12090 2.32275 2.39855 2.85292 3.00598 3.19754 3.23879 3.29246 3.55055 3.74652 4.04971 4.17766 4.41249 4.44097 4.49979 4.65957 4.72307 4.78210 4.94637 4.96594 5.05031 5.09351 5.11177 5.12314 5.21002 5.23442 5.27177 5.46202 5.55294 5.56156 5.62086 5.66576 5.74490 5.78763 5.81403 5.83153 5.94535 6.04452 6.11085 6.11970 6.38111 6.61287 6.98409 7.44920 7.57556 7.65267 8.33087 8.51597 9.21316 10.83276 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.001973 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.005728 B =14186.141314 C =15275.730586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.485 5.485 4 C -0.035 4.035 5 C -0.036 4.036 6 C 0.143 3.857 7 N -0.683 5.683 8 C 0.046 3.954 9 C 0.145 3.855 10 H 0.073 0.927 11 C -0.112 4.112 12 C -0.137 4.137 13 C 0.101 3.899 14 N -0.622 5.622 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 O -0.194 6.194 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.183 0.817 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.346 0.654 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.670 -0.657 0.496 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.215 5.215 4 C -0.174 4.174 5 C -0.089 4.089 6 C 0.014 3.986 7 N -0.315 5.315 8 C -0.084 4.084 9 C 0.040 3.960 10 H 0.091 0.909 11 C -0.150 4.150 12 C -0.175 4.175 13 C -0.023 4.023 14 N -0.360 5.360 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.298 4.298 18 S 0.165 5.835 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 O -0.081 6.081 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.200 0.800 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.947 1.128 -0.316 27.971 hybrid contribution 1.819 -2.088 0.593 2.832 sum -26.128 -0.960 0.277 26.147 Atomic orbital electron populations 1.20250 0.81372 1.05138 1.04616 1.26318 0.96513 0.78784 1.00533 1.70452 1.02090 1.30357 1.18614 1.23129 0.95204 0.93036 1.06060 1.23278 0.83619 0.94950 1.07073 1.20240 0.88884 0.98067 0.91401 1.60399 1.37177 1.22029 1.11906 1.22382 0.91023 0.97600 0.97381 1.21361 0.83741 0.95384 0.95485 0.90911 1.22557 0.96292 0.96727 0.99451 1.22827 0.95653 1.00100 0.98908 1.22303 0.97872 0.84826 0.97273 1.48576 1.06439 1.15264 1.65725 1.20043 0.82431 0.86777 0.76933 1.90680 1.85041 1.21709 1.41561 1.23518 0.98307 1.02851 1.05121 1.85376 0.93621 1.25199 1.79267 1.22899 0.93602 1.05019 1.46762 0.90874 1.24995 0.97905 0.96073 0.94614 1.70025 1.18565 1.22578 1.39113 0.86112 0.80615 0.80522 0.78226 1.19604 1.20552 1.20549 1.84395 1.16599 1.37580 1.69480 0.89009 0.89318 0.88131 0.79983 0.91096 0.88968 0.83598 0.92295 0.90681 0.90357 0.90155 0.89970 0.90641 0.91425 0.90289 0.89348 0.89270 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.01 0.38 0.11 16 2 C 0.19 1.80 8.34 -12.94 -0.11 1.69 16 3 N -0.49 -5.61 11.29 -11.10 -0.13 -5.74 16 4 C -0.03 -0.37 11.80 -17.77 -0.21 -0.58 16 5 C -0.04 -0.36 6.90 -35.68 -0.25 -0.61 16 6 C 0.14 1.30 6.23 -4.97 -0.03 1.27 16 7 N -0.68 -6.65 6.25 -115.06 -0.72 -7.37 16 8 C 0.05 0.53 5.07 -3.83 -0.02 0.51 16 9 C 0.14 1.69 3.13 -66.96 -0.21 1.48 16 10 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 11 C -0.11 -0.98 6.27 -24.90 -0.16 -1.13 16 12 C -0.14 -1.10 7.08 -24.59 -0.17 -1.28 16 13 C 0.10 1.05 6.74 -2.53 -0.02 1.04 16 14 N -0.62 -8.68 3.07 -163.02 -0.50 -9.18 16 15 C 0.55 10.28 7.69 -10.99 -0.08 10.20 16 16 O -0.52 -11.39 14.66 5.56 0.08 -11.31 16 17 C -0.15 -2.98 5.09 36.01 0.18 -2.80 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 19 C -0.53 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 23 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 O -0.19 -2.09 10.78 5.38 0.06 -2.03 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.35 3.32 8.78 -39.29 -0.34 2.98 16 35 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 36 H 0.07 0.85 8.02 -51.93 -0.42 0.43 16 37 H 0.08 0.67 7.78 -51.93 -0.40 0.27 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.82 7.47 -51.93 -0.39 0.43 16 43 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -35.57 390.84 -9.24 -44.81 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.92 Total: 0.82 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.50 Total: -2.98 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.61 Total: -47.60 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.14 Total: -13.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.57 -9.24 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319049008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.990 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds