Wall clock time and date at job start Sat Apr 11 2020 05:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29030 * 124.91076 * 2 1 4 4 C 1.31786 * 117.12010 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74549 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46995 * 305.02347 * 5 4 3 7 7 C 1.50704 * 109.46970 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00268 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99960 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99837 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46847 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.51027 * 305.09822 * 11 10 9 13 13 C 1.53298 * 109.50828 * 184.99774 * 11 10 9 14 14 N 1.47152 * 108.37990 * 187.77099 * 13 11 10 15 15 C 1.36943 * 120.98188 * 230.51448 * 14 13 11 16 16 H 1.08003 * 119.99838 * 153.64276 * 15 14 13 17 17 C 1.38809 * 119.99794 * 333.91174 * 15 14 13 18 18 N 1.31621 * 120.00497 * 342.81844 * 17 15 14 19 19 Si 1.86805 * 119.99741 * 162.81502 * 17 15 14 20 20 H 1.48504 * 109.46606 * 90.00442 * 19 17 15 21 21 H 1.48497 * 109.47187 * 210.00271 * 19 17 15 22 22 H 1.48496 * 109.47148 * 330.00716 * 19 17 15 23 23 C 1.47154 * 118.03517 * 50.79159 * 14 13 11 24 24 C 1.53708 * 108.16132 * 309.15433 * 23 14 13 25 25 O 1.42961 * 109.51153 * 65.25500 * 11 10 9 26 26 C 1.33628 * 114.50350 * 0.23328 * 4 3 2 27 27 S 1.70973 * 124.92089 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47550 * 90.00193 * 1 2 3 29 29 H 1.09005 * 109.46451 * 209.99654 * 1 2 3 30 30 H 1.08995 * 109.47596 * 329.99425 * 1 2 3 31 31 H 1.08998 * 109.47364 * 185.02368 * 5 4 3 32 32 H 1.08996 * 109.47301 * 65.02112 * 5 4 3 33 33 H 1.08997 * 109.47102 * 60.00379 * 6 5 4 34 34 H 1.08996 * 109.46905 * 300.00008 * 6 5 4 35 35 H 0.97003 * 119.99682 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47676 * 59.99941 * 10 9 7 37 37 H 1.09004 * 109.47497 * 299.99604 * 10 9 7 38 38 H 1.09002 * 109.68170 * 68.05663 * 13 11 10 39 39 H 1.08999 * 109.68596 * 307.49410 * 13 11 10 40 40 H 0.96996 * 120.00059 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.68413 * 68.93349 * 23 14 13 42 42 H 1.09006 * 109.67772 * 189.48739 * 23 14 13 43 43 H 1.09002 * 109.65567 * 292.57338 * 24 23 14 44 44 H 1.08994 * 109.44215 * 172.37865 * 24 23 14 45 45 H 1.07997 * 126.03818 * 179.77095 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0248 -0.0012 6 6 4.2323 2.9502 -1.1825 7 6 5.2122 4.0952 -1.1835 8 8 6.0648 4.1645 -0.3238 9 7 5.1410 5.0422 -2.1399 10 6 6.0932 6.1556 -2.1405 11 6 5.7950 7.0809 -3.3220 12 1 5.7991 6.5037 -4.2465 13 6 6.8651 8.1761 -3.3972 14 7 6.4562 9.1550 -4.4169 15 6 7.3199 9.5461 -5.4051 16 1 6.9347 9.8981 -6.3507 17 6 8.6903 9.4847 -5.1934 18 7 9.1633 9.3832 -3.9693 19 14 9.8635 9.5462 -6.6458 20 1 10.2218 10.9584 -6.9331 21 1 11.0932 8.7796 -6.3216 22 1 9.2079 8.9497 -7.8372 23 6 5.0939 9.7060 -4.3398 24 6 4.1084 8.5324 -4.2217 25 8 4.5129 7.6872 -3.1419 26 6 3.9354 -0.4004 -0.0059 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 5.5447 1.6356 -0.0915 32 1 4.4373 2.5831 0.9303 33 1 3.2182 3.3395 -1.0921 34 1 4.3256 2.3919 -2.1140 35 1 4.4594 4.9866 -2.8278 36 1 7.1074 5.7664 -2.2303 37 1 5.9996 6.7143 -1.2093 38 1 7.8226 7.7353 -3.6747 39 1 6.9542 8.6695 -2.4294 40 1 10.1210 9.3399 -3.8214 41 1 5.0076 10.3509 -3.4653 42 1 4.8780 10.2789 -5.2417 43 1 4.1057 7.9610 -5.1499 44 1 3.1074 8.9173 -4.0274 45 1 4.9545 -0.7577 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319322721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:28 Heat of formation + Delta-G solvation = -23.330622 kcal Electronic energy + Delta-G solvation = -26321.084834 eV Core-core repulsion = 22465.916227 eV Total energy + Delta-G solvation = -3855.168606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.35680 -39.48514 -38.39366 -34.84561 -34.33486 -34.06845 -31.74639 -31.30529 -30.72734 -28.67433 -27.43341 -26.14606 -24.63194 -23.29674 -22.68967 -21.59504 -20.36928 -19.99730 -19.51294 -17.81684 -17.14941 -16.86526 -16.07066 -15.82138 -15.55903 -15.29170 -15.22281 -15.00236 -14.35402 -14.18961 -13.94519 -13.83051 -13.47965 -13.41777 -13.26996 -13.03716 -12.84511 -12.69929 -12.56642 -12.12875 -12.05958 -11.72605 -11.49224 -11.18373 -11.11553 -10.85257 -10.73178 -10.42864 -10.30493 -10.04183 -9.95520 -9.76323 -9.72084 -9.64917 -9.08597 -8.98589 -8.82351 -8.56281 -6.77193 -5.86383 -3.30097 0.38195 1.02535 1.39659 2.45212 2.80408 3.32088 3.38022 3.40490 3.41933 3.72430 4.26071 4.42446 4.54454 4.76808 4.81809 4.93330 4.96779 5.02185 5.11395 5.19001 5.30906 5.34079 5.43285 5.48338 5.56717 5.64443 5.75332 5.84171 5.86203 5.92506 6.01639 6.03072 6.12146 6.24212 6.37324 6.50485 6.69283 6.77248 7.05371 7.43991 7.46319 7.68620 7.69548 7.83954 8.31164 8.39183 9.08769 9.71934 10.29096 11.21606 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.001881 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.838252 B =14883.854707 C =15542.159339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.051 3.949 3 N -0.468 5.468 4 C 0.075 3.925 5 C -0.028 4.028 6 C -0.131 4.131 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.721 5.721 10 C 0.132 3.868 11 C 0.055 3.945 12 H 0.055 0.945 13 C 0.152 3.848 14 N -0.595 5.595 15 C -0.257 4.257 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.279 1.279 23 C 0.109 3.891 24 C 0.050 3.950 25 O -0.390 6.390 26 C -0.258 4.258 27 S 0.106 5.894 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 -21.240 6.194 27.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.184 5.184 4 C -0.056 4.056 5 C -0.068 4.068 6 C -0.172 4.172 7 C 0.296 3.704 8 O -0.425 6.425 9 N -0.372 5.372 10 C 0.008 3.992 11 C -0.004 4.004 12 H 0.073 0.927 13 C 0.026 3.974 14 N -0.318 5.318 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.018 4.018 24 C -0.028 4.028 25 O -0.309 6.309 26 C -0.397 4.397 27 S 0.360 5.640 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.119 -21.770 7.011 27.981 hybrid contribution 1.159 0.834 -1.326 1.949 sum -14.960 -20.936 5.685 26.353 Atomic orbital electron populations 1.20461 0.85101 1.04288 1.04020 1.27083 1.01824 0.90895 1.02985 1.66101 1.04555 1.31517 1.16196 1.20346 0.90082 0.94342 1.00863 1.19930 0.95709 0.91776 0.99411 1.21547 1.00222 0.95247 1.00167 1.20598 0.85216 0.83324 0.81248 1.90703 1.37362 1.77110 1.37351 1.46020 1.35361 1.25340 1.30440 1.21402 0.92603 0.86009 0.99194 1.23139 0.86380 0.94989 0.95903 0.92673 1.21310 0.95446 0.88245 0.92432 1.44069 1.09792 1.45838 1.32130 1.19168 0.86830 1.40336 0.92261 0.91385 1.25065 0.97418 1.00920 0.96244 1.70018 1.12588 1.53492 1.18428 0.86274 0.80547 0.77756 0.82056 1.21283 1.21418 1.20466 1.21691 0.86676 0.93854 0.99548 1.23078 0.97623 0.92649 0.89454 1.87789 1.35084 1.63860 1.44187 1.26849 1.03172 0.95657 1.14010 1.83965 0.98181 1.13000 1.68826 0.89460 0.90119 0.89124 0.89330 0.89164 0.88074 0.89199 0.76456 0.89974 0.90761 0.88608 0.95064 0.93384 0.95513 0.91978 0.93866 0.90062 0.80462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.46 36.01 0.38 -0.02 16 2 C 0.05 0.42 7.39 -13.45 -0.10 0.32 16 3 N -0.47 -5.04 10.34 -8.06 -0.08 -5.12 16 4 C 0.08 0.77 6.08 -84.23 -0.51 0.26 16 5 C -0.03 -0.30 5.00 -27.88 -0.14 -0.44 16 6 C -0.13 -1.41 5.60 -27.88 -0.16 -1.57 16 7 C 0.51 7.33 7.83 -10.98 -0.09 7.24 16 8 O -0.55 -9.86 15.98 5.56 0.09 -9.77 16 9 N -0.72 -10.31 5.51 -60.29 -0.33 -10.64 16 10 C 0.13 2.26 5.34 -4.04 -0.02 2.24 16 11 C 0.06 1.05 2.81 -26.57 -0.07 0.97 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 13 C 0.15 3.60 4.73 -3.53 -0.02 3.58 16 14 N -0.59 -14.81 3.04 -171.57 -0.52 -15.33 16 15 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 16 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 17 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 18 N -0.90 -25.87 11.15 55.49 0.62 -25.25 16 19 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.11 2.26 6.76 -3.32 -0.02 2.24 16 24 C 0.05 0.87 7.00 37.53 0.26 1.14 16 25 O -0.39 -7.28 10.33 -35.23 -0.36 -7.65 16 26 C -0.26 -2.21 11.07 29.12 0.32 -1.89 16 27 S 0.11 0.76 23.18 -107.50 -2.49 -1.73 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.91 7.98 -51.93 -0.41 0.49 16 32 H 0.09 1.07 8.10 -51.93 -0.42 0.64 16 33 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.93 8.47 -40.82 -0.35 4.58 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 38 H 0.10 2.48 6.14 -51.93 -0.32 2.17 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -32.97 385.66 -9.66 -42.63 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.95 Total: 3.76 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.40 Total: 6.98 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.32 Total: -56.35 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.28 Total: -17.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.49 Total: -1.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.97 -9.66 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319322721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.297 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds