Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29030 * 124.91076 * 2 1 4 4 C 1.31786 * 117.12010 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.74549 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46995 * 305.02347 * 5 4 3 7 7 C 1.50704 * 109.46970 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00268 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99960 * 179.97438 * 7 6 5 10 10 C 1.46495 * 119.99837 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46847 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.51027 * 305.09822 * 11 10 9 13 13 C 1.53298 * 109.50828 * 184.99774 * 11 10 9 14 14 N 1.47152 * 108.37990 * 187.77099 * 13 11 10 15 15 C 1.36943 * 120.98188 * 230.51448 * 14 13 11 16 16 H 1.08003 * 119.99838 * 153.64276 * 15 14 13 17 17 C 1.38809 * 119.99794 * 333.91174 * 15 14 13 18 18 N 1.31621 * 120.00497 * 342.81844 * 17 15 14 19 19 Si 1.86805 * 119.99741 * 162.81502 * 17 15 14 20 20 H 1.48504 * 109.46606 * 90.00442 * 19 17 15 21 21 H 1.48497 * 109.47187 * 210.00271 * 19 17 15 22 22 H 1.48496 * 109.47148 * 330.00716 * 19 17 15 23 23 C 1.47154 * 118.03517 * 50.79159 * 14 13 11 24 24 C 1.53708 * 108.16132 * 309.15433 * 23 14 13 25 25 O 1.42961 * 109.51153 * 65.25500 * 11 10 9 26 26 C 1.33628 * 114.50350 * 0.23328 * 4 3 2 27 27 S 1.70973 * 124.92089 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47550 * 90.00193 * 1 2 3 29 29 H 1.09005 * 109.46451 * 209.99654 * 1 2 3 30 30 H 1.08995 * 109.47596 * 329.99425 * 1 2 3 31 31 H 1.08998 * 109.47364 * 185.02368 * 5 4 3 32 32 H 1.08996 * 109.47301 * 65.02112 * 5 4 3 33 33 H 1.08997 * 109.47102 * 60.00379 * 6 5 4 34 34 H 1.08996 * 109.46905 * 300.00008 * 6 5 4 35 35 H 0.97003 * 119.99682 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.47676 * 59.99941 * 10 9 7 37 37 H 1.09004 * 109.47497 * 299.99604 * 10 9 7 38 38 H 1.09002 * 109.68170 * 68.05663 * 13 11 10 39 39 H 1.08999 * 109.68596 * 307.49410 * 13 11 10 40 40 H 0.96996 * 120.00059 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.68413 * 68.93349 * 23 14 13 42 42 H 1.09006 * 109.67772 * 189.48739 * 23 14 13 43 43 H 1.09002 * 109.65567 * 292.57338 * 24 23 14 44 44 H 1.08994 * 109.44215 * 172.37865 * 24 23 14 45 45 H 1.07997 * 126.03818 * 179.77095 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2454 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0248 -0.0012 6 6 4.2323 2.9502 -1.1825 7 6 5.2122 4.0952 -1.1835 8 8 6.0648 4.1645 -0.3238 9 7 5.1410 5.0422 -2.1399 10 6 6.0932 6.1556 -2.1405 11 6 5.7950 7.0809 -3.3220 12 1 5.7991 6.5037 -4.2465 13 6 6.8651 8.1761 -3.3972 14 7 6.4562 9.1550 -4.4169 15 6 7.3199 9.5461 -5.4051 16 1 6.9347 9.8981 -6.3507 17 6 8.6903 9.4847 -5.1934 18 7 9.1633 9.3832 -3.9693 19 14 9.8635 9.5462 -6.6458 20 1 10.2218 10.9584 -6.9331 21 1 11.0932 8.7796 -6.3216 22 1 9.2079 8.9497 -7.8372 23 6 5.0939 9.7060 -4.3398 24 6 4.1084 8.5324 -4.2217 25 8 4.5129 7.6872 -3.1419 26 6 3.9354 -0.4004 -0.0059 27 16 2.4857 -1.4019 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 5.5447 1.6356 -0.0915 32 1 4.4373 2.5831 0.9303 33 1 3.2182 3.3395 -1.0921 34 1 4.3256 2.3919 -2.1140 35 1 4.4594 4.9866 -2.8278 36 1 7.1074 5.7664 -2.2303 37 1 5.9996 6.7143 -1.2093 38 1 7.8226 7.7353 -3.6747 39 1 6.9542 8.6695 -2.4294 40 1 10.1210 9.3399 -3.8214 41 1 5.0076 10.3509 -3.4653 42 1 4.8780 10.2789 -5.2417 43 1 4.1057 7.9610 -5.1499 44 1 3.1074 8.9173 -4.0274 45 1 4.9545 -0.7577 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319322721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -46.254170 kcal Electronic energy + Delta-G solvation = -26322.078873 eV Core-core repulsion = 22465.916227 eV Total energy + Delta-G solvation = -3856.162646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17214 -40.63885 -39.91798 -36.47810 -35.86000 -34.88810 -33.26830 -32.73274 -31.93416 -29.35573 -29.01853 -27.60074 -25.82518 -25.02954 -23.54080 -23.01846 -21.74544 -21.04392 -20.63368 -18.93475 -18.50704 -18.09868 -17.52465 -17.14424 -16.86008 -16.56203 -16.17879 -16.02870 -15.91720 -15.52958 -15.22485 -15.04506 -14.76597 -14.61276 -14.52075 -14.21885 -13.99462 -13.70845 -13.41764 -13.17563 -13.03206 -12.99367 -12.80700 -12.67752 -12.51580 -12.43301 -12.21105 -12.11181 -11.99448 -11.87907 -11.32262 -11.00148 -10.77241 -10.58656 -10.55439 -10.34527 -10.12206 -9.61171 -8.76501 -7.92370 -5.40015 -0.22714 0.45343 0.77940 1.45400 1.47157 1.56936 1.63962 1.75417 2.19270 2.47430 2.78594 3.14446 3.22611 3.49099 3.72603 3.96214 4.03974 4.07164 4.08791 4.20061 4.26658 4.37549 4.44011 4.51711 4.52336 4.58665 4.62131 4.67301 4.69902 4.70873 4.83398 4.95480 4.97276 5.04165 5.06016 5.11174 5.21596 5.29854 5.40467 5.51342 5.58912 6.25571 6.32007 6.55072 6.81159 7.04040 7.24225 7.73157 8.27054 9.13421 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020924 B = 0.001881 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.838252 B =14883.854707 C =15542.159339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.039 3.961 3 N -0.500 5.500 4 C 0.056 3.944 5 C -0.024 4.024 6 C -0.116 4.116 7 C 0.510 3.490 8 O -0.587 6.587 9 N -0.711 5.711 10 C 0.143 3.857 11 C 0.077 3.923 12 H 0.066 0.934 13 C 0.159 3.841 14 N -0.614 5.614 15 C -0.266 4.266 16 H 0.075 0.925 17 C -0.052 4.052 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.267 1.267 23 C 0.101 3.899 24 C 0.057 3.943 25 O -0.391 6.391 26 C -0.266 4.266 27 S 0.148 5.852 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.415 0.585 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.067 0.933 39 H -0.002 1.002 40 H 0.252 0.748 41 H 0.015 0.985 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 -23.170 4.806 30.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.239 4.239 3 N -0.217 5.217 4 C -0.075 4.075 5 C -0.064 4.064 6 C -0.156 4.156 7 C 0.298 3.702 8 O -0.468 6.468 9 N -0.363 5.363 10 C 0.018 3.982 11 C 0.017 3.983 12 H 0.084 0.916 13 C 0.032 3.968 14 N -0.339 5.339 15 C -0.396 4.396 16 H 0.092 0.908 17 C -0.248 4.248 18 N -0.582 5.582 19 Si 0.798 3.202 20 H -0.212 1.212 21 H -0.219 1.219 22 H -0.191 1.191 23 C -0.024 4.024 24 C -0.021 4.021 25 O -0.310 6.310 26 C -0.405 4.405 27 S 0.403 5.597 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.090 0.910 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.251 0.749 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.017 0.983 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -18.374 -23.711 5.598 30.514 hybrid contribution 1.762 1.446 -0.860 2.436 sum -16.612 -22.264 4.738 28.180 Atomic orbital electron populations 1.20618 0.83077 1.05177 1.05070 1.27645 1.03213 0.91049 1.01976 1.66101 1.04880 1.32958 1.17739 1.20252 0.90115 0.94615 1.02535 1.19818 0.96177 0.91996 0.98451 1.21478 0.99015 0.93772 1.01315 1.21245 0.85079 0.83667 0.80174 1.90689 1.39204 1.78014 1.38849 1.45868 1.35035 1.24413 1.30989 1.21061 0.93023 0.86554 0.97587 1.22750 0.85056 0.93513 0.96941 0.91619 1.21096 0.96058 0.89138 0.90516 1.44373 1.11080 1.46600 1.31798 1.19547 0.87496 1.39527 0.93015 0.90782 1.25868 0.99045 1.01275 0.98569 1.70186 1.12421 1.55117 1.20452 0.85230 0.78146 0.77499 0.79282 1.21152 1.21916 1.19139 1.21922 0.85538 0.95419 0.99556 1.23157 0.98116 0.91058 0.89722 1.87804 1.34219 1.63913 1.45047 1.27129 1.04730 0.95641 1.12984 1.83798 0.96652 1.11551 1.67715 0.88211 0.88019 0.89451 0.89262 0.91045 0.87375 0.86981 0.74866 0.90793 0.92523 0.91446 0.98346 0.93933 0.96733 0.90858 0.92639 0.86195 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.46 71.24 0.75 0.11 16 2 C 0.04 0.58 7.39 88.52 0.65 1.24 16 3 N -0.50 -10.20 10.34 -179.41 -1.86 -12.06 16 4 C 0.06 1.10 6.08 41.52 0.25 1.35 16 5 C -0.02 -0.51 5.00 29.85 0.15 -0.36 16 6 C -0.12 -2.35 5.60 29.85 0.17 -2.18 16 7 C 0.51 14.44 7.83 87.66 0.69 15.12 16 8 O -0.59 -21.55 15.98 -3.03 -0.05 -21.60 16 9 N -0.71 -19.70 5.51 -463.05 -2.55 -22.25 16 10 C 0.14 4.96 5.34 86.38 0.46 5.42 16 11 C 0.08 2.89 2.81 30.70 0.09 2.98 16 12 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 13 C 0.16 7.73 4.73 86.35 0.41 8.14 16 14 N -0.61 -30.82 3.04 -696.72 -2.12 -32.94 16 15 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 16 H 0.07 3.85 7.88 -2.91 -0.02 3.82 16 17 C -0.05 -2.89 4.94 84.86 0.42 -2.47 16 18 N -0.94 -55.52 11.15 21.65 0.24 -55.28 16 19 Si 0.97 44.30 29.59 68.60 2.03 46.33 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 23 C 0.10 4.10 6.76 86.49 0.58 4.69 16 24 C 0.06 1.83 7.00 72.22 0.51 2.34 16 25 O -0.39 -13.92 10.33 -148.98 -1.54 -15.46 16 26 C -0.27 -4.14 11.07 66.77 0.74 -3.40 16 27 S 0.15 1.81 23.18 -56.49 -1.31 0.50 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 1.82 7.98 -2.39 -0.02 1.80 16 32 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 33 H 0.11 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.11 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.41 9.31 8.47 -92.71 -0.79 8.52 16 36 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 3.65 6.14 -2.39 -0.01 3.64 16 39 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 2.77 7.96 -2.38 -0.02 2.75 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -72.87 385.66 -0.27 -73.14 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.21 Total: 20.29 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 6.67 Total: 19.35 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -6.29 Total: -122.53 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.59 Total: -37.07 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.31 Total: 0.50 kcal Total: -72.87 -0.27 -73.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319322721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.882 kcal (2) G-P(sol) polarization free energy of solvation -72.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds