Wall clock time and date at job start Sat Apr 11 2020 05:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.77223 * 127.34546 * 2 1 4 4 C 1.72208 * 94.85123 * 179.97438 * 3 2 1 5 5 O 1.21823 * 127.05956 * 180.02562 * 4 3 2 6 6 N 1.34242 * 105.88440 * 359.97438 * 4 3 2 7 7 C 1.46495 * 121.38239 * 179.72486 * 6 4 3 8 8 C 1.50699 * 109.47071 * 90.02898 * 7 6 4 9 9 O 1.21282 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00060 * 180.02562 * 8 7 6 11 11 C 1.47422 * 125.64855 * 355.09250 * 10 8 7 12 12 C 1.54916 * 104.83302 * 155.83898 * 11 10 8 13 13 C 1.55157 * 101.57837 * 37.01167 * 12 11 10 14 14 C 1.47025 * 125.64832 * 174.79374 * 10 8 7 15 15 H 1.09006 * 109.88292 * 300.50636 * 14 10 8 16 16 C 1.52996 * 109.88734 * 61.67104 * 14 10 8 17 17 N 1.46490 * 109.47743 * 185.23280 * 16 14 10 18 18 C 1.36935 * 120.00572 * 185.01296 * 17 16 14 19 19 H 1.08004 * 119.99659 * 0.02562 * 18 17 16 20 20 C 1.38817 * 120.00365 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99835 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00010 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47536 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47055 * 120.00384 * 22 20 18 25 25 H 1.48502 * 109.47442 * 240.00316 * 22 20 18 26 26 C 1.32565 * 127.33763 * 179.97438 * 2 1 3 27 27 C 1.50707 * 121.64913 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.46580 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46826 * 120.01979 * 1 2 3 30 30 H 1.08998 * 109.47035 * 240.02350 * 1 2 3 31 31 H 1.08994 * 109.47455 * 210.02902 * 7 6 4 32 32 H 1.08999 * 109.46906 * 330.03084 * 7 6 4 33 33 H 1.08996 * 110.37225 * 274.67805 * 11 10 8 34 34 H 1.08999 * 110.36641 * 36.89546 * 11 10 8 35 35 H 1.08997 * 111.00281 * 155.08537 * 12 11 10 36 36 H 1.09001 * 111.00464 * 278.89942 * 12 11 10 37 37 H 1.08997 * 110.72449 * 82.86190 * 13 12 11 38 38 H 1.09001 * 110.71757 * 205.95592 * 13 12 11 39 39 H 1.09000 * 109.47193 * 305.24055 * 16 14 10 40 40 H 1.09006 * 109.46697 * 65.23188 * 16 14 10 41 41 H 0.97002 * 119.99769 * 5.01611 * 17 16 14 42 42 H 0.96993 * 119.99812 * 179.97438 * 21 20 18 43 43 H 1.08992 * 109.47198 * 270.00263 * 27 26 2 44 44 H 1.09007 * 109.46503 * 30.00411 * 27 26 2 45 45 H 1.08999 * 109.47284 * 149.99913 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5821 1.4089 0.0000 4 6 4.0345 0.4838 0.0008 5 8 5.1760 0.9093 0.0015 6 7 3.6508 -0.8026 0.0016 7 6 4.6312 -1.8912 -0.0036 8 6 4.9732 -2.2659 1.4154 9 8 4.4499 -1.6810 2.3400 10 7 5.8613 -3.2504 1.6570 11 6 6.4928 -4.1073 0.6370 12 6 7.8108 -4.5946 1.2891 13 6 7.3738 -4.7918 2.7648 14 6 6.3656 -3.6436 2.9809 15 1 6.8616 -2.7967 3.4552 16 6 5.2081 -4.1290 3.8557 17 7 5.6988 -4.3997 5.2091 18 6 4.8608 -4.9444 6.1451 19 1 3.8381 -5.1749 5.8854 20 6 5.3260 -5.2015 7.4275 21 7 6.5725 -4.9211 7.7439 22 14 4.1831 -5.9452 8.7041 23 1 2.8439 -6.1654 8.1012 24 1 4.7362 -7.2430 9.1675 25 1 4.0604 -5.0190 9.8584 26 6 2.3110 -1.0540 0.0005 27 6 1.7706 -2.4608 0.0017 28 1 -0.3632 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 4.2110 -2.7562 -0.5166 32 1 5.5335 -1.5649 -0.5208 33 1 5.8493 -4.9553 0.4027 34 1 6.7038 -3.5317 -0.2642 35 1 8.1391 -5.5365 0.8497 36 1 8.5897 -3.8363 1.2097 37 1 6.8941 -5.7613 2.8988 38 1 8.2261 -4.6887 3.4364 39 1 4.4361 -3.3605 3.8960 40 1 4.7901 -5.0419 3.4313 41 1 6.6174 -4.1930 5.4423 42 1 6.8974 -5.1003 8.6400 43 1 1.6406 -2.7992 1.0295 44 1 0.8093 -2.4811 -0.5119 45 1 2.4709 -3.1195 -0.5119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324287367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:32 Heat of formation + Delta-G solvation = -44.145124 kcal Electronic energy + Delta-G solvation = -27827.969376 eV Core-core repulsion = 23971.898185 eV Total energy + Delta-G solvation = -3856.071191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40415 -40.98447 -38.92946 -38.54854 -36.47047 -34.64541 -33.59256 -32.79779 -31.18224 -30.49191 -29.87136 -26.78451 -26.18926 -25.23835 -24.38251 -23.38235 -21.97217 -20.97631 -20.35586 -19.31839 -19.24920 -18.53577 -18.08600 -17.48390 -17.01701 -16.56144 -16.45545 -16.03822 -15.71921 -15.20937 -15.08036 -15.05727 -14.93289 -14.88599 -14.47428 -14.15384 -13.89747 -13.76479 -13.60780 -13.46614 -13.41518 -13.06107 -12.95978 -12.86328 -12.77944 -12.47952 -12.19622 -12.09929 -11.94527 -11.90174 -11.82937 -11.62231 -11.31894 -11.25385 -10.96645 -10.42889 -9.78184 -9.07359 -8.91860 -8.00354 -5.30578 -0.19597 0.32103 0.70983 0.97366 1.38852 1.43324 1.45592 1.55164 1.57076 1.93257 2.52744 3.25422 3.33560 3.46976 3.60707 3.68857 3.76773 3.89528 3.93517 4.08980 4.10389 4.21755 4.27136 4.30682 4.49366 4.57435 4.65398 4.67982 4.73877 4.81651 4.88763 4.90444 4.94022 5.01740 5.09965 5.11232 5.12690 5.31565 5.35926 5.37797 5.43526 5.62799 6.12559 6.20781 6.41595 6.96523 7.27185 7.98674 8.25057 9.23318 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.003148 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.407494 B = 8892.946361 C =10184.163943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.200 4.200 3 S -0.007 6.007 4 C 0.468 3.532 5 O -0.521 6.521 6 N -0.515 5.515 7 C 0.091 3.909 8 C 0.502 3.498 9 O -0.575 6.575 10 N -0.606 5.606 11 C 0.089 3.911 12 C -0.121 4.121 13 C -0.116 4.116 14 C 0.137 3.863 15 H 0.041 0.959 16 C 0.156 3.844 17 N -0.739 5.739 18 C -0.248 4.248 19 H 0.070 0.930 20 C -0.072 4.072 21 N -0.968 5.968 22 Si 0.977 3.023 23 H -0.267 1.267 24 H -0.285 1.285 25 H -0.294 1.294 26 C 0.087 3.913 27 C -0.097 4.097 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.136 0.864 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.001 0.999 40 H 0.028 0.972 41 H 0.374 0.626 42 H 0.253 0.747 43 H 0.072 0.928 44 H 0.123 0.877 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 1.796 -27.504 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.319 4.319 3 S 0.237 5.763 4 C 0.152 3.848 5 O -0.404 6.404 6 N -0.234 5.234 7 C -0.037 4.037 8 C 0.290 3.710 9 O -0.454 6.454 10 N -0.340 5.340 11 C -0.031 4.031 12 C -0.159 4.159 13 C -0.154 4.154 14 C 0.032 3.968 15 H 0.059 0.941 16 C 0.028 3.972 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.088 0.912 20 C -0.264 4.264 21 N -0.618 5.618 22 Si 0.805 3.195 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.221 1.221 26 C -0.022 4.022 27 C -0.156 4.156 28 H 0.096 0.904 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.154 0.846 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.019 0.981 40 H 0.046 0.954 41 H 0.206 0.794 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.141 0.859 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.740 3.695 -27.015 28.632 hybrid contribution 0.646 -1.041 1.796 2.174 sum -8.093 2.654 -25.218 26.618 Atomic orbital electron populations 1.20275 0.82896 1.04140 1.04526 1.24052 1.01026 0.90181 1.16651 1.84978 0.97837 1.12818 1.80666 1.21852 0.94720 0.85756 0.82522 1.90911 1.20969 1.72946 1.55622 1.45656 1.07037 1.06537 1.64166 1.21914 0.95535 0.92718 0.93511 1.21139 0.78604 0.78944 0.92307 1.90783 1.53119 1.54047 1.47467 1.48588 1.42775 1.33925 1.08720 1.22842 0.94434 0.94793 0.91061 1.22825 0.96534 1.03717 0.92786 1.22558 0.97358 0.96681 0.98818 1.21558 0.94400 0.97114 0.83694 0.94096 1.20926 0.94993 0.96240 0.85006 1.42365 1.12264 1.75808 1.07733 1.19594 0.94046 1.32493 0.91872 0.91168 1.25597 0.98108 1.03191 0.99531 1.69822 1.16277 1.55448 1.20246 0.85033 0.78350 0.77423 0.78688 1.19137 1.21180 1.22112 1.19811 0.80848 1.00088 1.01457 1.20921 1.03800 0.86835 1.04019 0.90393 0.87506 0.89741 0.81198 0.84615 0.88316 0.87074 0.86492 0.90289 0.90509 0.91000 0.98109 0.95376 0.79396 0.93806 0.90918 0.85909 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.61 9.56 71.24 0.68 0.08 16 2 C -0.20 -3.71 6.72 24.53 0.16 -3.54 16 3 S -0.01 -0.17 22.96 -56.49 -1.30 -1.47 16 4 C 0.47 14.41 8.27 129.87 1.07 15.49 16 5 O -0.52 -19.52 17.55 -4.74 -0.08 -19.61 16 6 N -0.51 -12.57 2.09 -647.52 -1.35 -13.93 16 7 C 0.09 1.79 4.68 85.63 0.40 2.19 16 8 C 0.50 15.23 7.74 87.66 0.68 15.91 16 9 O -0.58 -24.62 15.22 -3.04 -0.05 -24.66 16 10 N -0.61 -16.40 3.07 -788.07 -2.42 -18.82 16 11 C 0.09 1.30 6.74 86.86 0.59 1.89 16 12 C -0.12 -1.97 7.08 31.99 0.23 -1.74 16 13 C -0.12 -3.22 6.23 31.78 0.20 -3.02 16 14 C 0.14 4.86 2.95 45.34 0.13 4.99 16 15 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 16 C 0.16 7.01 5.66 86.38 0.49 7.50 16 17 N -0.74 -40.27 5.41 -343.47 -1.86 -42.13 16 18 C -0.25 -14.66 9.99 84.04 0.84 -13.82 16 19 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 22 Si 0.98 47.40 29.55 68.60 2.03 49.42 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 26 C 0.09 1.67 6.59 40.71 0.27 1.94 16 27 C -0.10 -1.11 9.47 71.24 0.67 -0.44 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.49 8.00 -2.39 -0.02 0.47 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.17 1.54 6.12 -2.39 -0.01 1.52 16 32 H 0.14 2.32 7.61 -2.39 -0.02 2.30 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.11 0.87 7.47 -2.39 -0.02 0.86 16 35 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 2.25 7.77 -2.39 -0.02 2.23 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.00 0.05 6.55 -2.39 -0.02 0.04 16 40 H 0.03 1.21 8.01 -2.38 -0.02 1.20 16 41 H 0.37 21.39 7.61 -92.71 -0.71 20.69 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.12 0.61 7.41 -2.38 -0.02 0.59 16 45 H 0.09 0.66 6.18 -2.39 -0.01 0.64 16 Total: -1.00 -89.39 381.41 2.44 -86.94 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.31 Total: 21.09 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 6.88 Total: 23.61 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -5.35 Total: -135.33 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -0.13 Total: -44.27 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -1.30 Total: -1.47 kcal Total: -89.39 2.44 -86.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324287367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.798 kcal (2) G-P(sol) polarization free energy of solvation -89.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds