Wall clock time and date at job start Sat Apr 11 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30256 * 125.61943 * 2 1 4 4 C 1.34471 * 108.70179 * 179.77511 * 3 2 1 5 5 C 1.34327 * 107.66995 * 0.39422 * 4 3 2 6 6 C 1.50703 * 126.44656 * 179.87555 * 5 4 3 7 7 N 1.46908 * 109.46841 * 95.43078 * 6 5 4 8 8 C 1.46905 * 110.99690 * 285.08656 * 7 6 5 9 9 C 1.53002 * 109.46711 * 170.00176 * 8 7 6 10 10 N 1.46494 * 109.46833 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99859 * 179.72470 * 10 9 8 12 12 O 1.21275 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99974 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47012 * 180.02562 * 13 11 10 15 15 C 1.76203 * 99.99745 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99826 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99847 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00199 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 89.99654 * 19 17 15 21 21 H 1.48504 * 109.47351 * 210.00194 * 19 17 15 22 22 H 1.48503 * 109.46919 * 329.99837 * 19 17 15 23 23 C 1.46895 * 110.99759 * 161.13634 * 7 6 5 24 24 C 1.53003 * 117.49965 * 10.69730 * 23 7 6 25 25 C 1.52997 * 60.00162 * 252.51191 * 24 23 7 26 26 O 1.33962 * 125.61933 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47508 * 269.97901 * 1 2 3 28 28 H 1.08996 * 109.46952 * 29.98040 * 1 2 3 29 29 H 1.09001 * 109.46833 * 149.97258 * 1 2 3 30 30 H 1.08003 * 126.16685 * 180.26491 * 4 3 2 31 31 H 1.08999 * 109.47060 * 335.42987 * 6 5 4 32 32 H 1.08996 * 109.47334 * 215.42794 * 6 5 4 33 33 H 1.08996 * 109.47095 * 50.00216 * 8 7 6 34 34 H 1.09001 * 109.46871 * 290.00196 * 8 7 6 35 35 H 1.08996 * 109.47308 * 60.00171 * 9 8 7 36 36 H 1.09005 * 109.47243 * 300.00110 * 9 8 7 37 37 H 0.97002 * 120.00135 * 0.02562 * 10 9 8 38 38 H 1.08999 * 109.47275 * 299.99908 * 13 11 10 39 39 H 1.08997 * 109.46945 * 60.00007 * 13 11 10 40 40 H 0.97002 * 119.99756 * 180.02562 * 18 17 15 41 41 H 1.09002 * 115.55081 * 156.41216 * 23 7 6 42 42 H 1.08992 * 117.49879 * 0.02562 * 24 23 7 43 43 H 1.09005 * 117.49227 * 145.02445 * 24 23 7 44 44 H 1.09001 * 117.50073 * 252.51188 * 25 24 23 45 45 H 1.08999 * 117.49685 * 107.48846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6676 0.0050 5 6 3.5698 -0.6756 -0.0007 6 6 4.7938 -1.5549 -0.0007 7 7 5.1108 -1.9529 1.3774 8 6 5.7129 -0.8387 2.1218 9 6 5.7990 -1.2039 3.6051 10 7 6.4000 -0.0931 4.3474 11 6 6.5718 -0.1884 5.6808 12 8 6.2285 -1.1935 6.2662 13 6 7.1905 0.9541 6.4443 14 16 7.2856 0.5250 8.2002 15 6 8.0244 1.9936 8.8344 16 1 8.2705 2.8060 8.1668 17 6 8.2901 2.1062 10.1921 18 7 7.9898 1.1161 11.0058 19 14 9.0740 3.6627 10.8645 20 1 8.0113 4.6274 11.2455 21 1 9.8913 3.3293 12.0587 22 1 9.9428 4.2688 9.8237 23 6 5.9859 -3.1326 1.3965 24 6 6.6057 -3.5740 0.0691 25 6 5.4813 -4.3978 0.6997 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 4.4157 1.3163 0.0103 31 1 5.6354 -1.0060 -0.4232 32 1 4.6021 -2.4444 -0.6008 33 1 5.0973 0.0528 2.0023 34 1 6.7138 -0.6434 1.7369 35 1 6.4146 -2.0954 3.7246 36 1 4.7981 -1.3993 3.9900 37 1 6.6703 0.7127 3.8799 38 1 8.1934 1.1454 6.0626 39 1 6.5783 1.8474 6.3208 40 1 8.1751 1.1949 11.9547 41 1 6.5842 -3.2595 2.2987 42 1 6.3646 -2.9888 -0.8182 43 1 7.6123 -3.9913 0.0980 44 1 5.7480 -5.3571 1.1433 45 1 4.5000 -4.3548 0.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663705840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:18 Heat of formation + Delta-G solvation = 25.139500 kcal Electronic energy + Delta-G solvation = -26023.578977 eV Core-core repulsion = 22170.512193 eV Total energy + Delta-G solvation = -3853.066784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.63378 -39.77736 -38.94049 -35.47345 -35.03130 -34.17566 -32.46358 -32.41812 -30.60248 -29.18533 -27.40259 -25.50395 -25.10861 -23.31487 -22.76955 -22.45546 -21.51562 -20.47563 -20.12229 -17.91769 -17.60255 -17.17587 -16.72308 -16.37216 -16.19785 -15.85967 -15.15039 -14.95551 -14.79701 -14.61148 -14.24205 -14.11022 -13.81755 -13.56317 -13.44865 -13.18262 -13.03472 -12.99964 -12.58713 -12.52434 -12.23822 -11.89048 -11.79073 -11.62825 -11.54053 -11.09004 -11.05306 -11.01841 -10.81554 -10.77037 -10.74366 -9.81314 -9.43018 -9.07552 -9.06511 -8.89012 -8.69734 -8.23045 -6.49427 -6.21073 -3.91633 1.06258 2.26675 2.35906 2.87927 3.10313 3.20352 3.22915 3.29584 3.37233 3.52054 3.71627 3.85124 4.20934 4.28133 4.34831 4.41570 4.48211 4.55266 4.63442 4.72813 4.83043 4.89530 4.97998 5.04180 5.14027 5.14921 5.17390 5.18281 5.22920 5.37579 5.49983 5.55367 5.60518 5.66967 5.70385 5.73940 5.88116 5.91258 5.99695 6.14187 6.39363 6.46743 6.63329 7.42066 7.60109 7.68587 8.35815 8.61013 9.24186 10.86353 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002064 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.279445 B =13561.796599 C =14850.807614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.191 3.809 3 N -0.484 5.484 4 C -0.033 4.033 5 C -0.037 4.037 6 C 0.134 3.866 7 N -0.500 5.500 8 C 0.043 3.957 9 C 0.127 3.873 10 N -0.739 5.739 11 C 0.533 3.467 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.073 0.927 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.019 3.981 24 C -0.221 4.221 25 C -0.169 4.169 26 O -0.192 6.192 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.181 0.819 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.131 0.869 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 -5.774 -29.153 30.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.173 4.173 5 C -0.091 4.091 6 C 0.007 3.993 7 N -0.223 5.223 8 C -0.085 4.085 9 C 0.002 3.998 10 N -0.395 5.395 11 C 0.319 3.681 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.089 4.089 24 C -0.260 4.260 25 C -0.207 4.207 26 O -0.079 6.079 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.106 0.894 30 H 0.198 0.802 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.148 0.852 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.940 -7.093 -27.738 30.307 hybrid contribution 2.084 2.129 -0.852 3.099 sum -7.855 -4.964 -28.590 30.062 Atomic orbital electron populations 1.20275 0.81297 1.05013 1.04940 1.26339 0.96537 0.78670 1.00065 1.70459 1.01979 1.30306 1.18644 1.23070 0.95276 0.92828 1.06092 1.23159 0.83643 0.94833 1.07436 1.20534 0.89851 0.98053 0.90907 1.61589 1.43342 1.04999 1.12345 1.22345 0.98529 0.93879 0.93768 1.21150 0.99541 0.89891 0.89194 1.45906 1.65766 1.19687 1.08113 1.20294 0.77937 0.88712 0.81183 1.90708 1.48704 1.31476 1.68051 1.23527 1.02992 0.99195 1.04641 1.85409 1.81119 1.24728 0.92110 1.22866 1.46960 1.02767 0.95750 0.90925 1.24999 0.95417 0.97388 0.95829 1.70022 1.44962 1.31001 1.04299 0.86163 0.79085 0.81763 0.78455 1.20258 1.20754 1.19707 1.22791 0.98115 0.91275 0.96752 1.23631 0.99018 1.05538 0.97807 1.23110 0.98582 0.95496 1.03496 1.84394 1.16474 1.37619 1.69404 0.88705 0.88117 0.89370 0.80186 0.90340 0.88231 0.89747 0.93237 0.91522 0.90775 0.76937 0.89215 0.89189 0.92185 0.85155 0.88446 0.88317 0.87953 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.19 1.85 8.34 -12.94 -0.11 1.75 16 3 N -0.48 -5.48 11.29 -11.10 -0.13 -5.61 16 4 C -0.03 -0.32 10.80 -17.78 -0.19 -0.51 16 5 C -0.04 -0.34 6.42 -35.69 -0.23 -0.57 16 6 C 0.13 0.94 4.18 -4.97 -0.02 0.91 16 7 N -0.50 -4.22 4.65 -228.07 -1.06 -5.28 16 8 C 0.04 0.36 4.90 -3.82 -0.02 0.35 16 9 C 0.13 1.51 5.67 -4.04 -0.02 1.49 16 10 N -0.74 -9.85 5.56 -60.30 -0.33 -10.19 16 11 C 0.53 10.03 7.85 -10.98 -0.09 9.95 16 12 O -0.52 -11.89 15.86 5.56 0.09 -11.81 16 13 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 19 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.02 0.15 5.83 -67.71 -0.39 -0.25 16 24 C -0.22 -1.31 9.56 -26.73 -0.26 -1.56 16 25 C -0.17 -1.14 9.91 -26.73 -0.26 -1.41 16 26 O -0.19 -2.02 10.78 5.36 0.06 -1.96 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.18 1.29 8.06 -52.48 -0.42 0.86 16 31 H 0.08 0.40 7.83 -51.93 -0.41 0.00 16 32 H 0.10 0.63 5.60 -51.93 -0.29 0.34 16 33 H 0.08 0.73 6.60 -51.93 -0.34 0.39 16 34 H 0.05 0.36 8.12 -51.93 -0.42 -0.07 16 35 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 40 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.13 1.08 6.34 -51.93 -0.33 0.75 16 42 H 0.10 0.49 6.03 -51.93 -0.31 0.17 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.67 7.46 -51.93 -0.39 0.28 16 LS Contribution 390.06 15.07 5.88 5.88 Total: -1.00 -37.04 390.06 -9.31 -46.35 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.52 Total: 1.24 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.79 Total: -5.68 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.79 Total: -46.64 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.15 Total: -13.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.04 -9.31 -46.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.494 kcal (2) G-P(sol) polarization free energy of solvation -37.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds