Wall clock time and date at job start Sat Apr 11 2020 05:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30256 * 125.61943 * 2 1 4 4 C 1.34471 * 108.70179 * 179.77511 * 3 2 1 5 5 C 1.34327 * 107.66995 * 0.39422 * 4 3 2 6 6 C 1.50703 * 126.44656 * 179.87555 * 5 4 3 7 7 N 1.46908 * 109.46841 * 95.43078 * 6 5 4 8 8 C 1.46905 * 110.99690 * 285.08656 * 7 6 5 9 9 C 1.53002 * 109.46711 * 170.00176 * 8 7 6 10 10 N 1.46494 * 109.46833 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99859 * 179.72470 * 10 9 8 12 12 O 1.21275 * 120.00156 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99974 * 179.97438 * 11 10 9 14 14 S 1.81002 * 109.47012 * 180.02562 * 13 11 10 15 15 C 1.76203 * 99.99745 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.38799 * 119.99826 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99847 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00199 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47364 * 89.99654 * 19 17 15 21 21 H 1.48504 * 109.47351 * 210.00194 * 19 17 15 22 22 H 1.48503 * 109.46919 * 329.99837 * 19 17 15 23 23 C 1.46895 * 110.99759 * 161.13634 * 7 6 5 24 24 C 1.53003 * 117.49965 * 10.69730 * 23 7 6 25 25 C 1.52997 * 60.00162 * 252.51191 * 24 23 7 26 26 O 1.33962 * 125.61933 * 180.02562 * 2 1 3 27 27 H 1.08993 * 109.47508 * 269.97901 * 1 2 3 28 28 H 1.08996 * 109.46952 * 29.98040 * 1 2 3 29 29 H 1.09001 * 109.46833 * 149.97258 * 1 2 3 30 30 H 1.08003 * 126.16685 * 180.26491 * 4 3 2 31 31 H 1.08999 * 109.47060 * 335.42987 * 6 5 4 32 32 H 1.08996 * 109.47334 * 215.42794 * 6 5 4 33 33 H 1.08996 * 109.47095 * 50.00216 * 8 7 6 34 34 H 1.09001 * 109.46871 * 290.00196 * 8 7 6 35 35 H 1.08996 * 109.47308 * 60.00171 * 9 8 7 36 36 H 1.09005 * 109.47243 * 300.00110 * 9 8 7 37 37 H 0.97002 * 120.00135 * 0.02562 * 10 9 8 38 38 H 1.08999 * 109.47275 * 299.99908 * 13 11 10 39 39 H 1.08997 * 109.46945 * 60.00007 * 13 11 10 40 40 H 0.97002 * 119.99756 * 180.02562 * 18 17 15 41 41 H 1.09002 * 115.55081 * 156.41216 * 23 7 6 42 42 H 1.08992 * 117.49879 * 0.02562 * 24 23 7 43 43 H 1.09005 * 117.49227 * 145.02445 * 24 23 7 44 44 H 1.09001 * 117.50073 * 252.51188 * 25 24 23 45 45 H 1.08999 * 117.49685 * 107.48846 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2657 1.0589 0.0000 4 6 3.5522 0.6676 0.0050 5 6 3.5698 -0.6756 -0.0007 6 6 4.7938 -1.5549 -0.0007 7 7 5.1108 -1.9529 1.3774 8 6 5.7129 -0.8387 2.1218 9 6 5.7990 -1.2039 3.6051 10 7 6.4000 -0.0931 4.3474 11 6 6.5718 -0.1884 5.6808 12 8 6.2285 -1.1935 6.2662 13 6 7.1905 0.9541 6.4443 14 16 7.2856 0.5250 8.2002 15 6 8.0244 1.9936 8.8344 16 1 8.2705 2.8060 8.1668 17 6 8.2901 2.1062 10.1921 18 7 7.9898 1.1161 11.0058 19 14 9.0740 3.6627 10.8645 20 1 8.0113 4.6274 11.2455 21 1 9.8913 3.3293 12.0587 22 1 9.9428 4.2688 9.8237 23 6 5.9859 -3.1326 1.3965 24 6 6.6057 -3.5740 0.0691 25 6 5.4813 -4.3978 0.6997 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 4.4157 1.3163 0.0103 31 1 5.6354 -1.0060 -0.4232 32 1 4.6021 -2.4444 -0.6008 33 1 5.0973 0.0528 2.0023 34 1 6.7138 -0.6434 1.7369 35 1 6.4146 -2.0954 3.7246 36 1 4.7981 -1.3993 3.9900 37 1 6.6703 0.7127 3.8799 38 1 8.1934 1.1454 6.0626 39 1 6.5783 1.8474 6.3208 40 1 8.1751 1.1949 11.9547 41 1 6.5842 -3.2595 2.2987 42 1 6.3646 -2.9888 -0.8182 43 1 7.6123 -3.9913 0.0980 44 1 5.7480 -5.3571 1.1433 45 1 4.5000 -4.3548 0.2271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663705840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:15 Heat of formation + Delta-G solvation = -4.070965 kcal Electronic energy + Delta-G solvation = -26024.845638 eV Core-core repulsion = 22170.512193 eV Total energy + Delta-G solvation = -3854.333445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.32071 -40.77905 -40.01136 -36.45052 -35.75859 -35.02994 -34.58457 -33.16886 -31.67722 -30.22094 -28.32481 -27.62402 -25.79495 -24.08713 -23.34960 -23.11305 -22.20029 -21.84149 -20.83335 -19.83003 -18.35995 -17.94088 -17.72855 -17.37676 -17.19907 -16.93741 -16.87993 -16.34260 -15.90568 -15.56042 -15.26038 -15.10208 -14.72338 -14.63846 -14.44382 -14.16482 -13.92859 -13.70133 -13.61965 -13.42807 -13.16858 -13.10123 -12.89498 -12.77348 -12.60769 -12.42097 -12.33887 -12.27825 -11.75254 -11.73257 -11.52719 -11.29859 -11.14435 -11.01933 -10.28125 -10.15860 -9.72973 -9.26823 -8.67388 -8.34782 -6.13118 0.39124 1.25733 1.42664 1.46093 1.56434 1.58773 1.62564 1.71900 2.12813 2.27346 2.75116 2.99352 2.99475 3.19320 3.32652 3.61872 3.75991 3.88150 3.88385 3.94889 4.02588 4.06347 4.11751 4.16087 4.30098 4.34094 4.44150 4.50291 4.59239 4.62560 4.67232 4.74228 4.78250 4.85974 4.90746 5.01791 5.04463 5.07440 5.22856 5.36161 5.37687 5.41870 5.80942 5.91047 6.19821 6.46847 6.73474 7.06433 7.21575 8.74481 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013754 B = 0.002064 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.279445 B =13561.796599 C =14850.807614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.182 3.818 3 N -0.518 5.518 4 C -0.045 4.045 5 C -0.043 4.043 6 C 0.138 3.862 7 N -0.516 5.516 8 C 0.056 3.944 9 C 0.130 3.870 10 N -0.711 5.711 11 C 0.534 3.466 12 O -0.566 6.566 13 C -0.128 4.128 14 S -0.154 6.154 15 C -0.545 4.545 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.257 1.257 23 C 0.004 3.996 24 C -0.201 4.201 25 C -0.174 4.174 26 O -0.208 6.208 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.201 0.799 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.417 0.583 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.271 0.729 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 -4.220 -31.501 32.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.024 4.024 3 N -0.249 5.249 4 C -0.184 4.184 5 C -0.097 4.097 6 C 0.011 3.989 7 N -0.239 5.239 8 C -0.072 4.072 9 C 0.006 3.994 10 N -0.366 5.366 11 C 0.320 3.680 12 O -0.444 6.444 13 C -0.279 4.279 14 S 0.073 5.927 15 C -0.693 4.693 16 H 0.102 0.898 17 C -0.193 4.193 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.181 1.181 23 C -0.104 4.104 24 C -0.240 4.240 25 C -0.212 4.212 26 O -0.095 6.095 27 H 0.120 0.880 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.218 0.782 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.255 0.745 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.098 -5.517 -30.158 31.980 hybrid contribution 1.755 1.585 -0.247 2.378 sum -7.343 -3.931 -30.404 31.525 Atomic orbital electron populations 1.20499 0.78809 1.06448 1.05769 1.27176 0.97945 0.78261 0.99050 1.70462 1.03046 1.31305 1.20044 1.23459 0.95434 0.93431 1.06047 1.23584 0.83811 0.95167 1.07130 1.20654 0.89641 0.98445 0.90143 1.61484 1.43894 1.05093 1.13397 1.22185 0.99957 0.93945 0.91140 1.21185 0.97773 0.89229 0.91262 1.45595 1.63906 1.20828 1.06272 1.20083 0.77688 0.87555 0.82694 1.90698 1.51104 1.33122 1.69469 1.23361 1.04989 1.00289 0.99305 1.85610 1.81599 1.26475 0.98975 1.23201 1.46871 1.02781 0.96446 0.89817 1.26152 0.95801 1.01197 0.96137 1.70190 1.46344 1.33572 1.04711 0.84938 0.78222 0.76856 0.77867 1.19357 1.20306 1.18095 1.22745 0.98797 0.91446 0.97422 1.23671 0.98892 1.04404 0.97058 1.23146 0.99036 0.95361 1.03680 1.84402 1.17244 1.38211 1.69676 0.88019 0.87094 0.87504 0.78237 0.87830 0.87492 0.89528 0.90897 0.92001 0.93292 0.74549 0.86886 0.87200 0.92001 0.86239 0.87051 0.87705 0.87832 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 71.24 0.75 0.20 16 2 C 0.18 3.43 8.34 88.34 0.74 4.16 16 3 N -0.52 -11.37 11.29 -303.83 -3.43 -14.81 16 4 C -0.04 -0.80 10.80 83.39 0.90 0.10 16 5 C -0.04 -0.74 6.42 24.79 0.16 -0.58 16 6 C 0.14 1.60 4.18 85.56 0.36 1.96 16 7 N -0.52 -7.83 4.65 -875.49 -4.07 -11.90 16 8 C 0.06 0.83 4.90 86.30 0.42 1.25 16 9 C 0.13 3.00 5.67 86.38 0.49 3.49 16 10 N -0.71 -17.79 5.56 -463.06 -2.57 -20.36 16 11 C 0.53 19.88 7.85 87.66 0.69 20.56 16 12 O -0.57 -26.80 15.86 -3.01 -0.05 -26.85 16 13 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 14 S -0.15 -8.60 20.57 -56.49 -1.16 -9.77 16 15 C -0.55 -31.21 9.50 67.95 0.65 -30.56 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 19 Si 1.00 43.69 29.55 68.60 2.03 45.71 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 C 0.00 0.06 5.83 44.92 0.26 0.32 16 24 C -0.20 -1.89 9.56 30.59 0.29 -1.60 16 25 C -0.17 -2.14 9.91 30.59 0.30 -1.84 16 26 O -0.21 -4.21 10.78 -3.74 -0.04 -4.25 16 27 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 31 H 0.10 0.69 7.83 -2.39 -0.02 0.67 16 32 H 0.11 1.09 5.60 -2.39 -0.01 1.08 16 33 H 0.09 1.29 6.60 -2.39 -0.02 1.27 16 34 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 35 H 0.06 1.53 6.40 -2.39 -0.02 1.52 16 36 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.42 7.20 8.47 -92.71 -0.79 6.41 16 38 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 39 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.12 1.91 6.34 -2.39 -0.02 1.90 16 42 H 0.11 0.74 6.03 -2.39 -0.01 0.73 16 43 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.21 7.46 -2.39 -0.02 1.19 16 Total: -1.00 -83.40 390.06 -1.87 -85.27 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.23 Total: 19.04 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 6.91 Total: -6.02 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -9.79 Total: -103.13 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.09 Total: -31.10 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.40 -1.87 -85.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663705840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.197 kcal (2) G-P(sol) polarization free energy of solvation -83.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds