Wall clock time and date at job start Sat Apr 11 2020 05:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29020 * 124.91873 * 2 1 4 4 C 1.31781 * 117.12693 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.74992 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47108 * 305.01824 * 5 4 3 7 7 C 1.50699 * 109.47108 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99974 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00127 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00082 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47063 * 179.97438 * 10 9 7 12 12 O 1.42897 * 110.64315 * 298.31057 * 11 10 9 13 13 C 1.55159 * 110.72013 * 174.97237 * 11 10 9 14 14 C 1.55129 * 101.49043 * 205.96907 * 13 11 10 15 15 N 1.47427 * 104.71812 * 37.29735 * 14 13 11 16 16 C 1.36942 * 125.64885 * 155.81713 * 15 14 13 17 17 H 1.07999 * 119.99355 * 5.51161 * 16 15 14 18 18 C 1.38806 * 119.99977 * 185.51062 * 16 15 14 19 19 N 1.31625 * 120.00252 * 7.32181 * 18 16 15 20 20 Si 1.86805 * 119.99943 * 187.31999 * 18 16 15 21 21 H 1.48491 * 109.47035 * 84.99269 * 20 18 16 22 22 H 1.48501 * 109.47201 * 204.99305 * 20 18 16 23 23 H 1.48504 * 109.46702 * 324.99256 * 20 18 16 24 24 C 1.47024 * 108.70314 * 335.55586 * 15 14 13 25 25 C 1.33637 * 114.49857 * 0.22341 * 4 3 2 26 26 S 1.70981 * 124.91215 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.46923 * 90.00295 * 1 2 3 28 28 H 1.08997 * 109.47223 * 210.00234 * 1 2 3 29 29 H 1.08998 * 109.47008 * 330.00241 * 1 2 3 30 30 H 1.08999 * 109.46940 * 185.02146 * 5 4 3 31 31 H 1.09002 * 109.47061 * 65.02053 * 5 4 3 32 32 H 1.08999 * 109.46958 * 60.00333 * 6 5 4 33 33 H 1.09002 * 109.47346 * 300.00054 * 6 5 4 34 34 H 0.97000 * 119.99790 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.47329 * 59.99740 * 10 9 7 36 36 H 1.09002 * 109.46947 * 300.00120 * 10 9 7 37 37 H 0.96697 * 113.99533 * 61.68917 * 12 11 10 38 38 H 1.08998 * 111.00641 * 324.21682 * 13 11 10 39 39 H 1.09008 * 110.99961 * 88.02458 * 13 11 10 40 40 H 1.09001 * 110.49644 * 278.46202 * 14 13 11 41 41 H 1.08994 * 110.34476 * 156.06124 * 14 13 11 42 42 H 0.97000 * 119.99633 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.88611 * 120.70572 * 24 15 14 44 44 H 1.09003 * 109.88062 * 241.86708 * 24 15 14 45 45 H 1.08002 * 126.03895 * 179.77469 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0245 -0.0012 6 6 4.2327 2.9498 -1.1825 7 6 5.2119 4.0954 -1.1828 8 8 6.0645 4.1646 -0.3230 9 7 5.1408 5.0425 -2.1391 10 6 6.0930 6.1558 -2.1397 11 6 5.7957 7.0806 -3.3218 12 8 5.9498 6.3822 -4.5589 13 6 6.7058 8.3364 -3.2787 14 6 5.8428 9.3700 -4.0491 15 7 4.4565 9.0795 -3.6402 16 6 3.4139 9.9669 -3.6671 17 1 3.5523 10.9499 -4.0926 18 6 2.1792 9.6030 -3.1476 19 7 2.0469 8.4641 -2.5012 20 14 0.7053 10.7297 -3.3659 21 1 0.0704 10.4649 -4.6818 22 1 -0.2773 10.4750 -2.2820 23 1 1.1512 12.1450 -3.3072 24 6 4.3774 7.6775 -3.2047 25 6 3.9354 -0.4007 -0.0057 26 16 2.4856 -1.4021 0.0006 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 5.5448 1.6351 -0.0915 31 1 4.4375 2.5828 0.9303 32 1 3.2187 3.3392 -1.0922 33 1 4.3260 2.3915 -2.1140 34 1 4.4591 4.9869 -2.8270 35 1 7.1071 5.7665 -2.2295 36 1 5.9994 6.7144 -1.2084 37 1 5.3476 5.6332 -4.6654 38 1 6.8811 8.6569 -2.2517 39 1 7.6482 8.1538 -3.7951 40 1 5.9569 9.2362 -5.1249 41 1 6.1188 10.3842 -3.7607 42 1 1.1842 8.2101 -2.1378 43 1 4.0391 7.6293 -2.1696 44 1 3.6897 7.1279 -3.8475 45 1 4.9545 -0.7582 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672030306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:39 Heat of formation + Delta-G solvation = -24.105668 kcal Electronic energy + Delta-G solvation = -26863.252822 eV Core-core repulsion = 23008.050607 eV Total energy + Delta-G solvation = -3855.202215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.29177 -39.60388 -38.33684 -35.07923 -34.11060 -33.89175 -32.21718 -31.49730 -29.56458 -28.59381 -27.93320 -26.15991 -25.01002 -23.46363 -22.46632 -20.66953 -19.91619 -19.89803 -19.76462 -17.73967 -17.50576 -16.76097 -16.32644 -15.68682 -15.55800 -15.37368 -15.08015 -14.57290 -14.26367 -14.02819 -13.89677 -13.75134 -13.46809 -13.30843 -13.09417 -12.81398 -12.68978 -12.45773 -12.28189 -12.04621 -11.95817 -11.61953 -11.52028 -11.18516 -11.09936 -10.84027 -10.71987 -10.45346 -10.24971 -10.03493 -9.84955 -9.81750 -9.66279 -9.61390 -9.28541 -8.91145 -8.82935 -8.68342 -6.86371 -5.74368 -3.09679 0.46556 1.10839 1.47551 2.54463 2.83557 3.38383 3.38899 3.43871 3.45415 3.81776 4.45827 4.58032 4.62053 4.81907 4.90369 4.98741 5.02194 5.04353 5.13865 5.21193 5.36334 5.40026 5.46453 5.49894 5.52663 5.59151 5.64978 5.85423 5.91972 5.95331 6.03424 6.09315 6.19286 6.30755 6.44871 6.59964 6.66389 6.89781 7.24027 7.47187 7.54098 7.66674 7.70248 8.07192 8.20858 8.40073 9.16364 9.77938 10.43707 11.35551 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.002557 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.983698 B =10948.636878 C =12842.266764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.467 5.467 4 C 0.077 3.923 5 C -0.027 4.027 6 C -0.133 4.133 7 C 0.516 3.484 8 O -0.550 6.550 9 N -0.721 5.721 10 C 0.110 3.890 11 C 0.086 3.914 12 O -0.552 6.552 13 C -0.114 4.114 14 C 0.136 3.864 15 N -0.603 5.603 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.157 3.843 25 C -0.260 4.260 26 S 0.102 5.898 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.367 0.633 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.042 0.958 42 H 0.252 0.748 43 H 0.074 0.926 44 H 0.031 0.969 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 -20.558 3.498 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.225 4.225 3 N -0.182 5.182 4 C -0.055 4.055 5 C -0.068 4.068 6 C -0.173 4.173 7 C 0.303 3.697 8 O -0.428 6.428 9 N -0.372 5.372 10 C -0.014 4.014 11 C 0.045 3.955 12 O -0.357 6.357 13 C -0.153 4.153 14 C 0.010 3.990 15 N -0.329 5.329 16 C -0.355 4.355 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.032 3.968 25 C -0.399 4.399 26 S 0.356 5.644 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.214 0.786 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.337 -20.590 4.103 21.124 hybrid contribution -1.027 0.738 -0.389 1.323 sum 1.310 -19.852 3.714 20.239 Atomic orbital electron populations 1.20475 0.85078 1.04312 1.04104 1.27097 1.01846 0.90753 1.02773 1.66104 1.04539 1.31473 1.16057 1.20345 0.90111 0.94292 1.00737 1.19921 0.95557 0.91790 0.99483 1.21558 1.00573 0.95109 1.00104 1.20569 0.84972 0.83248 0.80940 1.90680 1.37527 1.77322 1.37271 1.45922 1.35197 1.25346 1.30768 1.21933 0.92416 0.87488 0.99568 1.22917 0.99626 0.91028 0.81966 1.86505 1.63219 1.47593 1.38375 1.22744 0.97487 0.93731 1.01357 1.21618 0.85382 0.95931 0.96093 1.44375 1.04042 1.07977 1.76516 1.19069 0.88392 0.95107 1.32926 0.90356 1.24793 0.98000 0.97787 0.99962 1.69897 1.23482 1.22851 1.40739 0.86121 0.82539 0.79791 0.77227 1.21610 1.21701 1.20724 1.21878 0.88706 0.85203 1.01060 1.26820 1.03066 0.95642 1.14338 1.83934 0.98257 1.13167 1.69005 0.89390 0.90157 0.89010 0.89470 0.89153 0.87661 0.89147 0.76393 0.91394 0.90487 0.78635 0.90150 0.91011 0.95716 0.94002 0.93740 0.90807 0.95141 0.80547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.05 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.47 -5.70 10.34 -8.06 -0.08 -5.78 16 4 C 0.08 0.87 6.08 -84.23 -0.51 0.35 16 5 C -0.03 -0.31 5.00 -27.88 -0.14 -0.45 16 6 C -0.13 -1.59 5.60 -27.88 -0.16 -1.74 16 7 C 0.52 7.74 7.83 -10.98 -0.09 7.65 16 8 O -0.55 -9.95 15.98 5.55 0.09 -9.86 16 9 N -0.72 -10.67 5.17 -60.29 -0.31 -10.98 16 10 C 0.11 1.81 4.73 -4.04 -0.02 1.79 16 11 C 0.09 1.55 0.91 -88.79 -0.08 1.47 16 12 O -0.55 -9.44 13.10 -35.23 -0.46 -9.90 16 13 C -0.11 -2.04 6.27 -24.46 -0.15 -2.19 16 14 C 0.14 2.86 7.24 -2.41 -0.02 2.84 16 15 N -0.60 -15.28 3.39 -169.93 -0.58 -15.86 16 16 C -0.23 -6.29 10.26 -15.06 -0.15 -6.44 16 17 H 0.08 2.11 7.84 -52.49 -0.41 1.69 16 18 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 19 N -0.92 -26.31 10.46 55.49 0.58 -25.73 16 20 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.16 3.60 4.23 -3.06 -0.01 3.58 16 25 C -0.26 -2.41 11.07 29.12 0.32 -2.09 16 26 S 0.10 0.83 23.18 -107.50 -2.49 -1.67 16 27 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.93 7.98 -51.93 -0.41 0.51 16 31 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.40 5.40 7.38 -40.82 -0.30 5.10 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 37 H 0.37 5.05 8.12 45.56 0.37 5.42 16 38 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 39 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.90 6.56 -51.93 -0.34 1.56 16 44 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 45 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -33.96 384.65 -9.44 -43.40 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.13 Total: 8.93 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.83 Total: 4.70 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.39 Total: -58.36 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.37 Total: -19.76 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.96 -9.44 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672030306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.298 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds