Wall clock time and date at job start Sat Apr 11 2020 05:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30700 * 122.10826 * 2 1 4 4 C 1.30559 * 115.90938 * 180.21840 * 3 2 1 5 5 C 1.47250 * 125.54530 * 179.81845 * 4 3 2 6 6 O 1.21629 * 120.00423 * 172.29334 * 5 4 3 7 7 N 1.34778 * 120.00470 * 352.29302 * 5 4 3 8 8 C 1.47159 * 120.97600 * 353.19534 * 7 5 4 9 9 C 1.53295 * 108.38311 * 230.56513 * 8 7 5 10 10 O 1.42960 * 109.22214 * 307.69644 * 9 8 7 11 11 C 1.42962 * 114.16736 * 62.58369 * 10 9 8 12 12 H 1.08998 * 109.51337 * 57.39120 * 11 10 9 13 13 C 1.52999 * 109.51738 * 177.49926 * 11 10 9 14 14 H 1.08996 * 109.47620 * 174.89730 * 13 11 10 15 15 C 1.52997 * 109.47425 * 54.89248 * 13 11 10 16 16 N 1.46504 * 109.46673 * 294.89575 * 13 11 10 17 17 C 1.36930 * 120.00161 * 204.99752 * 16 13 11 18 18 H 1.08000 * 119.99846 * 0.02562 * 17 16 13 19 19 C 1.38813 * 120.00302 * 180.02562 * 17 16 13 20 20 N 1.31625 * 120.00059 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00144 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47054 * 119.99999 * 21 19 17 24 24 H 1.48505 * 109.47064 * 239.99612 * 21 19 17 25 25 C 1.47168 * 120.94772 * 173.26018 * 7 5 4 26 26 S 1.76103 * 108.91275 * 359.55973 * 4 3 2 27 27 C 1.34240 * 122.10959 * 179.72744 * 2 1 3 28 28 C 1.50698 * 125.45272 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47341 * 270.26879 * 1 2 3 30 30 H 1.09001 * 109.47066 * 30.27139 * 1 2 3 31 31 H 1.09003 * 109.46863 * 150.27199 * 1 2 3 32 32 H 1.09001 * 109.68082 * 110.84263 * 8 7 5 33 33 H 1.08996 * 109.68192 * 350.28699 * 8 7 5 34 34 H 1.09000 * 109.51244 * 187.77535 * 9 8 7 35 35 H 1.08991 * 109.51675 * 67.62210 * 9 8 7 36 36 H 1.09006 * 109.47037 * 300.00818 * 15 13 11 37 37 H 1.09001 * 109.47165 * 60.00227 * 15 13 11 38 38 H 1.09002 * 109.47585 * 180.02562 * 15 13 11 39 39 H 0.97007 * 120.00020 * 25.00520 * 16 13 11 40 40 H 0.96994 * 120.00290 * 179.97438 * 20 19 17 41 41 H 1.08991 * 109.72764 * 9.73829 * 25 7 5 42 42 H 1.09001 * 109.64180 * 249.18118 * 25 7 5 43 43 H 1.08994 * 109.47327 * 179.97438 * 28 27 2 44 44 H 1.09002 * 109.47272 * 299.97636 * 28 27 2 45 45 H 1.09003 * 109.47031 * 59.97362 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9661 -0.0045 5 6 4.4800 2.0648 -0.0092 6 8 5.6643 1.8238 0.1281 7 7 4.0652 3.3376 -0.1657 8 6 2.6607 3.6431 -0.4811 9 6 2.6307 4.5873 -1.6884 10 8 3.4817 5.7069 -1.4315 11 6 4.8592 5.3670 -1.2562 12 1 5.2198 4.8411 -2.1402 13 6 5.6784 6.6428 -1.0509 14 1 6.7120 6.3789 -0.8274 15 6 5.0929 7.4429 0.1144 16 7 5.6341 7.4531 -2.2706 17 6 6.6436 8.3374 -2.5422 18 1 7.4728 8.4373 -1.8574 19 6 6.6014 9.1056 -3.6976 20 7 5.5911 8.9836 -4.5325 21 14 7.9790 10.3115 -4.0684 22 1 8.9890 10.2587 -2.9811 23 1 8.6199 9.9495 -5.3582 24 1 7.4228 11.6854 -4.1605 25 6 5.0044 4.4621 -0.0273 26 16 3.8872 -0.7517 0.0036 27 6 2.2205 -1.1370 0.0054 28 6 1.6453 -2.5299 0.0115 29 1 -0.3634 0.0048 1.0276 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3633 -0.8924 -0.5096 32 1 2.1889 4.1261 0.3746 33 1 2.1299 2.7221 -0.7221 34 1 1.6110 4.9353 -1.8531 35 1 2.9829 4.0579 -2.5736 36 1 4.0591 7.7067 -0.1091 37 1 5.1258 6.8400 1.0220 38 1 5.6762 8.3520 0.2605 39 1 4.8894 7.3632 -2.8858 40 1 5.5614 9.5206 -5.3397 41 1 6.0250 4.0840 0.0316 42 1 4.7691 5.0272 0.8746 43 1 2.4565 -3.2580 0.0146 44 1 1.0317 -2.6658 0.9021 45 1 1.0317 -2.6735 -0.8779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675626760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:25 Heat of formation + Delta-G solvation = -29.673474 kcal Electronic energy + Delta-G solvation = -27502.614671 eV Core-core repulsion = 23647.171018 eV Total energy + Delta-G solvation = -3855.443653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88270 -40.79540 -39.60942 -37.14705 -35.88080 -34.50767 -34.15830 -31.91365 -30.82286 -29.99685 -29.05770 -27.24275 -26.25181 -25.83488 -24.88192 -23.63540 -21.50582 -20.99931 -20.20383 -19.30711 -19.15264 -17.91387 -17.62803 -17.13773 -17.00860 -16.76320 -16.19925 -16.02560 -15.73375 -15.57448 -15.17813 -14.94914 -14.50397 -14.45235 -14.13957 -14.00238 -13.93376 -13.78477 -13.59247 -13.36564 -13.21086 -13.01393 -12.87655 -12.84397 -12.46880 -12.39461 -12.13496 -12.11078 -11.90456 -11.74875 -11.65108 -11.58829 -11.22286 -10.94888 -10.60842 -10.41304 -9.84979 -9.56093 -9.00804 -7.91817 -5.20715 -0.92295 -0.02234 0.60060 1.11990 1.47531 1.48567 1.58645 1.72774 1.93154 2.56885 2.70975 2.82928 3.41404 3.49896 3.65820 3.85818 3.90833 3.94981 3.98038 4.00240 4.15370 4.31778 4.39151 4.45779 4.58294 4.60224 4.66999 4.69873 4.72727 4.78948 4.84262 4.88338 4.93356 4.98596 5.08155 5.08900 5.23247 5.25802 5.42690 5.52390 5.62178 6.02507 6.21527 6.29735 6.35649 6.75355 7.35724 8.10910 8.36011 9.32065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.002404 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.395800 B =11644.927726 C =11975.490712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.025 3.975 3 N -0.417 5.417 4 C -0.061 4.061 5 C 0.594 3.406 6 O -0.564 6.564 7 N -0.590 5.590 8 C 0.060 3.940 9 C 0.042 3.958 10 O -0.380 6.380 11 C 0.090 3.910 12 H 0.039 0.961 13 C 0.177 3.823 14 H 0.062 0.938 15 C -0.149 4.149 16 N -0.733 5.733 17 C -0.236 4.236 18 H 0.078 0.922 19 C -0.079 4.079 20 N -0.970 5.970 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.091 3.909 26 S 0.262 5.738 27 C -0.223 4.223 28 C -0.079 4.079 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.039 0.961 39 H 0.375 0.625 40 H 0.250 0.750 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.574 -26.684 12.723 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 N -0.136 5.136 4 C -0.332 4.332 5 C 0.380 3.620 6 O -0.443 6.443 7 N -0.321 5.321 8 C -0.062 4.062 9 C -0.035 4.035 10 O -0.299 6.299 11 C 0.031 3.969 12 H 0.057 0.943 13 C 0.068 3.932 14 H 0.080 0.920 15 C -0.208 4.208 16 N -0.373 5.373 17 C -0.368 4.368 18 H 0.096 0.904 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.803 3.197 22 H -0.189 1.189 23 H -0.222 1.222 24 H -0.221 1.221 25 C -0.032 4.032 26 S 0.518 5.482 27 C -0.346 4.346 28 C -0.138 4.138 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.058 0.942 39 H 0.207 0.793 40 H 0.058 0.942 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.054 -26.550 12.854 31.866 hybrid contribution -0.221 0.964 -0.845 1.301 sum -12.275 -25.587 12.009 30.815 Atomic orbital electron populations 1.20510 0.84481 1.04614 1.04004 1.20744 1.00287 0.85757 1.04394 1.66565 1.03270 1.31489 1.12275 1.26969 0.93618 0.97867 1.14785 1.17081 0.86251 0.81923 0.76752 1.90822 1.17129 1.83672 1.52702 1.47987 1.11758 1.04541 1.67853 1.23362 0.80606 1.03571 0.98681 1.23199 0.96496 0.87771 0.96069 1.88044 1.17374 1.32499 1.91988 1.22583 0.82990 0.95565 0.95806 0.94252 1.20426 0.96212 0.88721 0.87809 0.92026 1.22219 1.00750 1.00020 0.97839 1.42544 1.25666 1.46049 1.23029 1.19697 1.00269 1.13297 1.03558 0.90368 1.25580 1.00802 1.02948 0.97797 1.69855 1.33373 1.45182 1.13739 0.85069 0.78801 0.78296 0.77581 1.18885 1.22205 1.22149 1.22423 0.95051 0.86583 0.99105 1.83999 1.03835 0.98484 1.61898 1.26135 0.97546 1.03482 1.07464 1.20521 1.01811 0.86181 1.05245 0.89598 0.90657 0.88352 0.89628 0.83597 0.85460 0.94057 0.93579 0.91086 0.94195 0.79343 0.94166 0.88537 0.88270 0.90029 0.87996 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.02 71.24 0.71 0.06 16 2 C 0.03 0.38 6.68 41.81 0.28 0.66 16 3 N -0.42 -8.75 7.03 -178.24 -1.25 -10.00 16 4 C -0.06 -1.49 7.18 87.25 0.63 -0.86 16 5 C 0.59 17.97 7.69 86.61 0.67 18.63 16 6 O -0.56 -20.01 16.42 -4.12 -0.07 -20.07 16 7 N -0.59 -17.10 3.02 -821.37 -2.48 -19.58 16 8 C 0.06 1.46 6.22 86.35 0.54 2.00 16 9 C 0.04 1.15 6.98 72.08 0.50 1.66 16 10 O -0.38 -13.72 9.24 -148.98 -1.38 -15.10 16 11 C 0.09 3.29 2.60 30.69 0.08 3.37 16 12 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 13 C 0.18 7.36 2.77 44.99 0.12 7.48 16 14 H 0.06 2.52 8.08 -2.39 -0.02 2.50 16 15 C -0.15 -5.52 9.06 71.98 0.65 -4.87 16 16 N -0.73 -38.83 5.10 -322.94 -1.65 -40.48 16 17 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 20 N -0.97 -61.47 13.06 21.65 0.28 -61.19 16 21 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 25 C 0.09 2.81 5.84 86.35 0.50 3.31 16 26 S 0.26 4.69 23.01 -56.49 -1.30 3.39 16 27 C -0.22 -2.85 6.36 24.77 0.16 -2.69 16 28 C -0.08 -0.35 9.45 71.24 0.67 0.32 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.36 7.33 -2.39 -0.02 0.34 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.15 3.29 4.39 -8.58 -0.04 3.26 16 34 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.81 7.56 -2.38 -0.02 1.79 16 37 H 0.07 2.10 6.42 -2.39 -0.02 2.09 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.37 21.73 7.58 -92.70 -0.70 21.03 16 40 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.10 3.08 7.06 -2.39 -0.02 3.07 16 42 H 0.10 2.75 6.27 -2.39 -0.01 2.73 16 43 H 0.08 0.27 8.13 -2.39 -0.02 0.25 16 44 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.10 0.18 7.93 -2.39 -0.02 0.16 16 Total: -1.00 -74.88 376.07 1.29 -73.59 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.29 Total: 27.77 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.82 Total: 12.17 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -5.10 Total: -131.25 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.44 Total: -35.17 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.30 Total: 3.39 kcal Total: -74.88 1.29 -73.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675626760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.915 kcal (2) G-P(sol) polarization free energy of solvation -74.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds