Wall clock time and date at job start Sat Apr 11 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30707 * 122.10664 * 2 1 4 4 C 1.30560 * 115.90578 * 180.02562 * 3 2 1 5 5 C 1.47255 * 125.54091 * 180.02562 * 4 3 2 6 6 O 1.21628 * 120.00154 * 325.94143 * 5 4 3 7 7 N 1.34769 * 120.00068 * 145.94396 * 5 4 3 8 8 C 1.47156 * 120.98316 * 174.10435 * 7 5 4 9 9 C 1.53304 * 108.38452 * 129.48394 * 8 7 5 10 10 O 1.42966 * 109.21914 * 52.30041 * 9 8 7 11 11 C 1.42951 * 114.16835 * 297.42251 * 10 9 8 12 12 H 1.09000 * 109.55540 * 302.62982 * 11 10 9 13 13 C 1.53010 * 109.51124 * 182.50641 * 11 10 9 14 14 H 1.08999 * 109.47066 * 185.25436 * 13 11 10 15 15 C 1.52998 * 109.46730 * 305.25076 * 13 11 10 16 16 N 1.46500 * 109.46980 * 65.25214 * 13 11 10 17 17 C 1.36935 * 119.99725 * 154.72794 * 16 13 11 18 18 H 1.08000 * 120.00339 * 359.97438 * 17 16 13 19 19 C 1.38816 * 119.99901 * 179.97438 * 17 16 13 20 20 N 1.31618 * 119.99916 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47241 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47130 * 120.00347 * 21 19 17 24 24 H 1.48499 * 109.47009 * 240.00228 * 21 19 17 25 25 C 1.47152 * 120.98225 * 354.12512 * 7 5 4 26 26 S 1.76091 * 108.91616 * 0.26863 * 4 3 2 27 27 C 1.34228 * 122.11332 * 180.02562 * 2 1 3 28 28 C 1.50711 * 125.44836 * 359.94278 * 27 2 1 29 29 H 1.09000 * 109.46827 * 89.97227 * 1 2 3 30 30 H 1.08999 * 109.47157 * 209.97325 * 1 2 3 31 31 H 1.08997 * 109.47350 * 329.97604 * 1 2 3 32 32 H 1.08994 * 109.68411 * 249.20799 * 8 7 5 33 33 H 1.08995 * 109.68136 * 9.76742 * 8 7 5 34 34 H 1.08998 * 109.51390 * 172.22891 * 9 8 7 35 35 H 1.08997 * 109.51164 * 292.32976 * 9 8 7 36 36 H 1.09004 * 109.47456 * 60.00159 * 15 13 11 37 37 H 1.08999 * 109.46864 * 180.02562 * 15 13 11 38 38 H 1.09006 * 109.47333 * 299.99773 * 15 13 11 39 39 H 0.96998 * 119.99902 * 334.99742 * 16 13 11 40 40 H 0.96997 * 119.99525 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.67884 * 110.79542 * 25 7 5 42 42 H 1.08994 * 109.70965 * 350.25893 * 25 7 5 43 43 H 1.09003 * 109.47034 * 90.00249 * 28 27 2 44 44 H 1.09001 * 109.46489 * 209.99577 * 28 27 2 45 45 H 1.08998 * 109.47145 * 329.99585 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1072 0.0000 4 6 3.4997 0.9661 -0.0005 5 6 4.4801 2.0649 -0.0001 6 8 4.2336 3.1000 -0.5892 7 7 5.6504 1.9235 0.6530 8 6 6.6979 2.9530 0.5620 9 6 7.1482 3.3116 1.9829 10 8 7.4939 2.1141 2.6833 11 6 6.4070 1.2014 2.8540 12 1 5.5921 1.6988 3.3800 13 6 6.8772 -0.0070 3.6662 14 1 6.0764 -0.7448 3.7167 15 6 8.1019 -0.6291 2.9923 16 7 7.2311 0.4231 5.0212 17 6 7.1785 -0.4693 6.0584 18 1 6.8757 -1.4902 5.8777 19 6 7.5143 -0.0619 7.3423 20 7 7.8838 1.1820 7.5624 21 14 7.4419 -1.2792 8.7573 22 1 7.0008 -2.6031 8.2494 23 1 8.7889 -1.4079 9.3690 24 1 6.4788 -0.7944 9.7785 25 6 5.9187 0.7348 1.4779 26 16 3.8873 -0.7516 -0.0089 27 6 2.2206 -1.1369 -0.0005 28 6 1.6453 -2.5299 0.0001 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 7.5447 2.5661 -0.0047 33 1 6.2995 3.8394 0.0686 34 1 8.0164 3.9688 1.9347 35 1 6.3365 3.8182 2.5050 36 1 8.9028 0.1086 2.9418 37 1 8.4366 -1.4902 3.5706 38 1 7.8385 -0.9491 1.9841 39 1 7.4989 1.3410 5.1842 40 1 8.1181 1.4667 8.4596 41 1 6.6872 0.1245 1.0033 42 1 5.0048 0.1518 1.5908 43 1 1.5058 -2.8658 -1.0275 44 1 2.3298 -3.2053 0.5134 45 1 0.6845 -2.5260 0.5148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675626762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:30 Heat of formation + Delta-G solvation = -11.995990 kcal Electronic energy + Delta-G solvation = -27864.036189 eV Core-core repulsion = 24009.359089 eV Total energy + Delta-G solvation = -3854.677100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76673 -39.95614 -38.39038 -35.46057 -34.82472 -33.60010 -32.53028 -30.60053 -30.10882 -28.83742 -27.49345 -26.45742 -25.14418 -24.80489 -23.33623 -22.40717 -20.34385 -19.80785 -18.82090 -18.53097 -17.41293 -17.28133 -16.59126 -16.06100 -15.74064 -15.26014 -15.12293 -14.93169 -14.52089 -14.29032 -14.00326 -13.57712 -13.47081 -13.44691 -13.34173 -13.16633 -12.93198 -12.79584 -12.59393 -12.30872 -12.26774 -12.05216 -11.42673 -11.41440 -11.18214 -10.91446 -10.80688 -10.73923 -10.55826 -10.29338 -10.04295 -9.90669 -9.84814 -9.70754 -9.56576 -8.94056 -8.87264 -8.61025 -6.97536 -5.76748 -3.06072 0.00929 0.83274 1.32823 2.09202 2.36895 2.92580 3.42164 3.47292 3.50060 3.80320 3.91600 4.45650 4.48843 4.52477 4.65445 4.72079 4.81656 5.02356 5.04001 5.11322 5.13613 5.18731 5.31240 5.34195 5.44120 5.48055 5.48929 5.55219 5.56864 5.67011 5.74472 5.87516 5.90997 5.94619 6.12281 6.16579 6.38995 6.57145 6.74181 6.93048 7.11268 7.35099 7.40369 7.68289 7.76664 8.41014 9.53186 10.10044 10.46446 11.45596 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011287 B = 0.003520 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.066732 B = 7953.161691 C = 9488.245348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.047 3.953 3 N -0.396 5.396 4 C -0.009 4.009 5 C 0.602 3.398 6 O -0.507 6.507 7 N -0.603 5.603 8 C 0.081 3.919 9 C 0.046 3.954 10 O -0.355 6.355 11 C 0.078 3.922 12 H 0.066 0.934 13 C 0.185 3.815 14 H 0.058 0.942 15 C -0.163 4.163 16 N -0.719 5.719 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.062 3.938 26 S 0.200 5.800 27 C -0.239 4.239 28 C -0.078 4.078 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.034 0.966 39 H 0.390 0.610 40 H 0.255 0.745 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.525 -4.694 -19.076 21.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.112 5.112 4 C -0.285 4.285 5 C 0.385 3.615 6 O -0.382 6.382 7 N -0.338 5.338 8 C -0.041 4.041 9 C -0.032 4.032 10 O -0.273 6.273 11 C 0.019 3.981 12 H 0.084 0.916 13 C 0.074 3.926 14 H 0.076 0.924 15 C -0.223 4.223 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.577 5.577 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.062 4.062 26 S 0.457 5.543 27 C -0.361 4.361 28 C -0.137 4.137 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.224 0.776 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.752 -4.326 -19.221 21.558 hybrid contribution -1.087 -0.305 0.803 1.385 sum -9.839 -4.630 -18.418 21.389 Atomic orbital electron populations 1.20408 0.86840 1.03600 1.02983 1.20198 0.98839 0.85662 1.04271 1.66495 1.03309 1.30639 1.10745 1.27115 0.94175 0.95681 1.11539 1.16685 0.80239 0.84989 0.79549 1.90829 1.76175 1.27162 1.44007 1.47944 1.15250 1.22738 1.47827 1.22467 0.89868 0.92315 0.99408 1.22956 1.01628 0.88398 0.90245 1.88111 1.34242 1.28925 1.76005 1.22945 0.90117 0.92636 0.92447 0.91589 1.20197 0.95444 0.90952 0.85975 0.92376 1.22432 1.00715 1.01332 0.97869 1.42351 1.80709 1.12097 1.00867 1.19272 1.38331 0.92552 0.87076 0.91100 1.24743 1.02203 0.96357 0.97475 1.69687 1.51788 1.15469 1.20722 0.86152 0.77208 0.80207 0.82805 1.20560 1.21859 1.21913 1.23044 1.02712 0.87197 0.93209 1.84081 1.03821 1.02307 1.64130 1.25600 0.98620 1.01926 1.09993 1.20339 1.01504 0.88624 1.03238 0.90596 0.90476 0.90404 0.89986 0.87940 0.87402 0.92571 0.92244 0.92738 0.94726 0.77579 0.93552 0.88916 0.89123 0.90106 0.90560 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.02 36.01 0.36 -0.30 16 2 C 0.05 0.55 6.68 -84.48 -0.56 -0.01 16 3 N -0.40 -5.85 10.62 -7.69 -0.08 -5.94 16 4 C -0.01 -0.12 6.62 -14.43 -0.10 -0.22 16 5 C 0.60 9.18 7.68 -12.60 -0.10 9.08 16 6 O -0.51 -9.09 16.58 5.25 0.09 -9.00 16 7 N -0.60 -8.10 3.02 -173.61 -0.52 -8.63 16 8 C 0.08 0.96 6.65 -3.53 -0.02 0.94 16 9 C 0.05 0.59 6.99 37.31 0.26 0.85 16 10 O -0.36 -5.85 9.24 -35.23 -0.33 -6.18 16 11 C 0.08 1.28 2.61 -26.57 -0.07 1.21 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 13 C 0.19 3.48 2.77 -67.93 -0.19 3.30 16 14 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 15 C -0.16 -2.79 9.06 37.16 0.34 -2.46 16 16 N -0.72 -17.65 5.10 -53.42 -0.27 -17.92 16 17 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.06 0.81 4.86 -3.54 -0.02 0.80 16 26 S 0.20 2.09 19.75 -107.50 -2.12 -0.03 16 27 C -0.24 -2.36 6.36 -35.72 -0.23 -2.59 16 28 C -0.08 -0.49 10.04 36.01 0.36 -0.13 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.47 6.60 -51.93 -0.34 0.13 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.20 7.06 -51.93 -0.37 0.83 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.09 7.56 -51.93 -0.39 0.70 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.47 6.42 -51.93 -0.33 0.13 16 39 H 0.39 10.44 7.59 -40.82 -0.31 10.14 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 1.08 6.27 -51.93 -0.33 0.76 16 42 H 0.09 1.13 4.46 -32.75 -0.15 0.99 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.43 6.65 -51.93 -0.35 0.08 16 LS Contribution 374.13 15.07 5.64 5.64 Total: -1.00 -34.03 374.13 -8.44 -42.47 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.33 Total: 6.38 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.21 Total: 3.37 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.15 Total: -59.65 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.24 Total: -15.18 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.12 Total: -0.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.03 -8.44 -42.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675626762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.473 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds