Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30699 * 122.10891 * 2 1 4 4 C 1.30554 * 115.90978 * 180.22253 * 3 2 1 5 5 C 1.47257 * 125.54632 * 179.82050 * 4 3 2 6 6 O 1.21624 * 120.00035 * 172.28925 * 5 4 3 7 7 N 1.34777 * 119.99816 * 352.29466 * 5 4 3 8 8 C 1.47148 * 120.98068 * 353.17235 * 7 5 4 9 9 C 1.53304 * 108.38428 * 230.55868 * 8 7 5 10 10 O 1.42966 * 109.22204 * 307.70010 * 9 8 7 11 11 C 1.42959 * 114.16480 * 62.58031 * 10 9 8 12 12 H 1.08999 * 109.55657 * 57.36938 * 11 10 9 13 13 C 1.53002 * 109.51151 * 177.49761 * 11 10 9 14 14 H 1.08996 * 109.47160 * 184.74740 * 13 11 10 15 15 C 1.53005 * 109.46723 * 304.74223 * 13 11 10 16 16 N 1.46494 * 109.47195 * 64.74319 * 13 11 10 17 17 C 1.36941 * 119.99798 * 155.00371 * 16 13 11 18 18 H 1.07994 * 120.00272 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99949 * 180.27618 * 17 16 13 20 20 N 1.31621 * 119.99823 * 359.72074 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 179.72511 * 19 17 16 22 22 H 1.48502 * 109.46911 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47196 * 119.99753 * 21 19 17 24 24 H 1.48503 * 109.46865 * 240.00008 * 21 19 17 25 25 C 1.47152 * 120.97942 * 173.19833 * 7 5 4 26 26 S 1.76102 * 108.91183 * 359.55745 * 4 3 2 27 27 C 1.34238 * 122.10976 * 179.73192 * 2 1 3 28 28 C 1.50700 * 125.44974 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47146 * 270.26657 * 1 2 3 30 30 H 1.09000 * 109.47194 * 30.26753 * 1 2 3 31 31 H 1.09000 * 109.47247 * 150.27182 * 1 2 3 32 32 H 1.08993 * 109.68170 * 350.28224 * 8 7 5 33 33 H 1.08997 * 109.68257 * 110.80008 * 8 7 5 34 34 H 1.09006 * 109.50756 * 67.62264 * 9 8 7 35 35 H 1.08995 * 109.51333 * 187.77772 * 9 8 7 36 36 H 1.08991 * 109.47485 * 300.00332 * 15 13 11 37 37 H 1.09004 * 109.46523 * 60.00342 * 15 13 11 38 38 H 1.08998 * 109.46888 * 179.97438 * 15 13 11 39 39 H 0.97002 * 120.00451 * 335.00356 * 16 13 11 40 40 H 0.96996 * 119.99669 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.68597 * 9.71567 * 25 7 5 42 42 H 1.09003 * 109.68018 * 249.16034 * 25 7 5 43 43 H 1.09005 * 109.46922 * 179.97438 * 28 27 2 44 44 H 1.09008 * 109.47143 * 299.96967 * 28 27 2 45 45 H 1.08994 * 109.47557 * 59.97269 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9661 -0.0046 5 6 4.4800 2.0648 -0.0093 6 8 5.6642 1.8237 0.1280 7 7 4.0651 3.3375 -0.1656 8 6 2.6608 3.6430 -0.4814 9 6 2.6310 4.5877 -1.6884 10 8 3.4820 5.7073 -1.4309 11 6 4.8594 5.3673 -1.2553 12 1 5.2209 4.8413 -2.1389 13 6 5.6784 6.6432 -1.0494 14 1 6.7376 6.3909 -0.9998 15 6 5.4360 7.5991 -2.2192 16 7 5.2710 7.2885 0.2011 17 6 6.1435 8.1105 0.8632 18 1 7.1316 8.2835 0.4633 19 6 5.7595 8.7175 2.0511 20 7 4.5549 8.5072 2.5382 21 14 6.9522 9.8328 2.9582 22 1 8.2318 9.9036 2.2079 23 1 6.3686 11.1936 3.0719 24 1 7.2046 9.2873 4.3162 25 6 5.0033 4.4626 -0.0261 26 16 3.8872 -0.7517 0.0035 27 6 2.2205 -1.1370 0.0053 28 6 1.6452 -2.5299 0.0113 29 1 -0.3633 0.0048 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 2.1301 2.7221 -0.7228 33 1 2.1885 4.1252 0.3745 34 1 2.9836 4.0584 -2.5737 35 1 1.6114 4.9357 -1.8533 36 1 5.7391 7.1190 -3.1496 37 1 4.3767 7.8513 -2.2687 38 1 6.0191 8.5082 -2.0723 39 1 4.3833 7.1335 0.5602 40 1 4.2868 8.9310 3.3684 41 1 6.0238 4.0844 0.0340 42 1 4.7670 5.0279 0.8754 43 1 2.4565 -3.2580 0.0144 44 1 1.0317 -2.6658 0.9020 45 1 1.0316 -2.6734 -0.8780 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675626763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -6.701714 kcal Electronic energy + Delta-G solvation = -27797.219234 eV Core-core repulsion = 23942.771712 eV Total energy + Delta-G solvation = -3854.447523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.79558 -39.70849 -38.24462 -35.46127 -34.54177 -33.58999 -32.22758 -30.32794 -30.06436 -28.33850 -28.14897 -26.29081 -25.09785 -23.98015 -23.42260 -22.32753 -20.30284 -19.58078 -19.14581 -18.31174 -17.34188 -16.78833 -16.24202 -15.98656 -15.76102 -15.21937 -14.79920 -14.58728 -14.43226 -14.18083 -13.82954 -13.48621 -13.41265 -13.37352 -13.30255 -13.14262 -12.95637 -12.64340 -12.52443 -12.31581 -11.85594 -11.78770 -11.41213 -11.26248 -11.13435 -10.81842 -10.74586 -10.46942 -10.44530 -10.28286 -10.02849 -9.82304 -9.76165 -9.54042 -9.38281 -8.95148 -8.88474 -8.30900 -6.88817 -5.70329 -2.98727 -0.03357 0.83850 1.38864 2.03997 2.95929 3.04021 3.47498 3.53305 3.55300 3.73146 4.11160 4.42508 4.51957 4.57763 4.64094 4.99054 4.99836 5.09258 5.19705 5.24634 5.28621 5.34807 5.41132 5.42449 5.45653 5.49556 5.62462 5.75546 5.80452 5.86115 5.94735 6.03973 6.16430 6.26877 6.42838 6.45179 6.60972 6.72027 6.83534 7.17527 7.19746 7.36338 7.55956 7.76591 8.00157 8.47794 9.60029 10.16939 10.53933 11.51993 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002781 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.640217 B =10065.187585 C =10346.540265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.046 3.954 3 N -0.415 5.415 4 C -0.010 4.010 5 C 0.593 3.407 6 O -0.532 6.532 7 N -0.582 5.582 8 C 0.048 3.952 9 C 0.048 3.952 10 O -0.361 6.361 11 C 0.079 3.921 12 H 0.055 0.945 13 C 0.182 3.818 14 H 0.060 0.940 15 C -0.159 4.159 16 N -0.718 5.718 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.085 3.915 26 S 0.246 5.754 27 C -0.250 4.250 28 C -0.074 4.074 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.389 0.611 40 H 0.253 0.747 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 -22.990 -9.045 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 N -0.134 5.134 4 C -0.284 4.284 5 C 0.377 3.623 6 O -0.409 6.409 7 N -0.314 5.314 8 C -0.075 4.075 9 C -0.030 4.030 10 O -0.279 6.279 11 C 0.020 3.980 12 H 0.073 0.927 13 C 0.072 3.928 14 H 0.078 0.922 15 C -0.219 4.219 16 N -0.361 5.361 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.037 4.037 26 S 0.503 5.497 27 C -0.373 4.373 28 C -0.133 4.133 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.051 0.949 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.224 0.776 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.735 -22.852 -8.873 25.706 hybrid contribution -0.666 0.482 0.731 1.100 sum -8.401 -22.370 -8.142 25.245 Atomic orbital electron populations 1.20392 0.86865 1.03436 1.03140 1.20242 0.98839 0.86132 1.03829 1.66681 1.03698 1.29907 1.13091 1.27555 0.93467 0.97304 1.10096 1.16747 0.86088 0.81480 0.77986 1.90852 1.15648 1.83091 1.51273 1.47973 1.11340 1.04804 1.67307 1.23296 0.81781 1.03139 0.99239 1.22943 0.96000 0.88425 0.95616 1.88094 1.17557 1.30419 1.91808 1.22897 0.82868 0.96967 0.95310 0.92709 1.20265 0.95232 0.88848 0.88479 0.92194 1.22320 1.02153 1.00368 0.97075 1.42429 1.16632 1.54943 1.22054 1.19285 0.95393 1.19749 1.02401 0.91133 1.24724 0.96751 1.01093 0.98338 1.69685 1.18198 1.47885 1.22057 0.86154 0.80167 0.80389 0.79703 1.20595 1.21995 1.21997 1.22607 0.94298 0.85718 1.01071 1.84005 1.02272 1.00604 1.62824 1.25554 0.98768 1.01867 1.11135 1.20255 1.00992 0.88576 1.03446 0.90508 0.90365 0.90753 0.84900 0.90217 0.93645 0.88007 0.94880 0.92449 0.92814 0.77577 0.93667 0.88333 0.87838 0.91062 0.89993 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.02 36.00 0.36 -0.17 16 2 C 0.05 0.46 6.68 -84.49 -0.56 -0.11 16 3 N -0.42 -5.16 7.03 -7.69 -0.05 -5.21 16 4 C -0.01 -0.14 7.18 -14.43 -0.10 -0.24 16 5 C 0.59 9.83 7.69 -12.59 -0.10 9.74 16 6 O -0.53 -10.05 16.42 5.26 0.09 -9.96 16 7 N -0.58 -9.60 3.02 -173.60 -0.52 -10.12 16 8 C 0.05 0.69 6.22 -3.53 -0.02 0.67 16 9 C 0.05 0.66 6.99 37.31 0.26 0.93 16 10 O -0.36 -6.41 9.24 -35.23 -0.33 -6.74 16 11 C 0.08 1.41 2.57 -26.57 -0.07 1.34 16 12 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 13 C 0.18 3.70 2.80 -67.93 -0.19 3.51 16 14 H 0.06 1.20 8.08 -51.93 -0.42 0.79 16 15 C -0.16 -3.01 9.30 37.16 0.35 -2.67 16 16 N -0.72 -17.96 4.24 -53.43 -0.23 -18.19 16 17 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 21 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 C 0.08 1.57 5.84 -3.53 -0.02 1.55 16 26 S 0.25 2.58 23.01 -107.50 -2.47 0.10 16 27 C -0.25 -2.16 6.36 -35.72 -0.23 -2.39 16 28 C -0.07 -0.37 9.45 36.01 0.34 -0.03 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.34 7.33 -51.93 -0.38 -0.04 16 32 H 0.13 1.71 4.39 -55.02 -0.24 1.47 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.39 10.53 7.08 -40.82 -0.29 10.24 16 40 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.10 1.86 7.06 -51.93 -0.37 1.50 16 42 H 0.10 2.23 6.94 -51.93 -0.36 1.87 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 45 H 0.08 0.30 7.93 -51.93 -0.41 -0.11 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -32.84 377.33 -9.00 -41.83 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.64 Total: 7.55 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.23 Total: 4.94 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.08 Total: -61.06 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.24 Total: -16.70 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.47 Total: 0.10 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.84 -9.00 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675626763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.131 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds