Wall clock time and date at job start Sat Apr 11 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30699 * 122.10891 * 2 1 4 4 C 1.30554 * 115.90978 * 180.22253 * 3 2 1 5 5 C 1.47257 * 125.54632 * 179.82050 * 4 3 2 6 6 O 1.21624 * 120.00035 * 172.28925 * 5 4 3 7 7 N 1.34777 * 119.99816 * 352.29466 * 5 4 3 8 8 C 1.47148 * 120.98068 * 353.17235 * 7 5 4 9 9 C 1.53304 * 108.38428 * 230.55868 * 8 7 5 10 10 O 1.42966 * 109.22204 * 307.70010 * 9 8 7 11 11 C 1.42959 * 114.16480 * 62.58031 * 10 9 8 12 12 H 1.08999 * 109.55657 * 57.36938 * 11 10 9 13 13 C 1.53002 * 109.51151 * 177.49761 * 11 10 9 14 14 H 1.08996 * 109.47160 * 184.74740 * 13 11 10 15 15 C 1.53005 * 109.46723 * 304.74223 * 13 11 10 16 16 N 1.46494 * 109.47195 * 64.74319 * 13 11 10 17 17 C 1.36941 * 119.99798 * 155.00371 * 16 13 11 18 18 H 1.07994 * 120.00272 * 0.02562 * 17 16 13 19 19 C 1.38814 * 119.99949 * 180.27618 * 17 16 13 20 20 N 1.31621 * 119.99823 * 359.72074 * 19 17 16 21 21 Si 1.86798 * 120.00061 * 179.72511 * 19 17 16 22 22 H 1.48502 * 109.46911 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47196 * 119.99753 * 21 19 17 24 24 H 1.48503 * 109.46865 * 240.00008 * 21 19 17 25 25 C 1.47152 * 120.97942 * 173.19833 * 7 5 4 26 26 S 1.76102 * 108.91183 * 359.55745 * 4 3 2 27 27 C 1.34238 * 122.10976 * 179.73192 * 2 1 3 28 28 C 1.50700 * 125.44974 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47146 * 270.26657 * 1 2 3 30 30 H 1.09000 * 109.47194 * 30.26753 * 1 2 3 31 31 H 1.09000 * 109.47247 * 150.27182 * 1 2 3 32 32 H 1.08993 * 109.68170 * 350.28224 * 8 7 5 33 33 H 1.08997 * 109.68257 * 110.80008 * 8 7 5 34 34 H 1.09006 * 109.50756 * 67.62264 * 9 8 7 35 35 H 1.08995 * 109.51333 * 187.77772 * 9 8 7 36 36 H 1.08991 * 109.47485 * 300.00332 * 15 13 11 37 37 H 1.09004 * 109.46523 * 60.00342 * 15 13 11 38 38 H 1.08998 * 109.46888 * 179.97438 * 15 13 11 39 39 H 0.97002 * 120.00451 * 335.00356 * 16 13 11 40 40 H 0.96996 * 119.99669 * 179.97438 * 20 19 17 41 41 H 1.09001 * 109.68597 * 9.71567 * 25 7 5 42 42 H 1.09003 * 109.68018 * 249.16034 * 25 7 5 43 43 H 1.09005 * 109.46922 * 179.97438 * 28 27 2 44 44 H 1.09008 * 109.47143 * 299.96967 * 28 27 2 45 45 H 1.08994 * 109.47557 * 59.97269 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2017 1.1071 0.0000 4 6 3.4996 0.9661 -0.0046 5 6 4.4800 2.0648 -0.0093 6 8 5.6642 1.8237 0.1280 7 7 4.0651 3.3375 -0.1656 8 6 2.6608 3.6430 -0.4814 9 6 2.6310 4.5877 -1.6884 10 8 3.4820 5.7073 -1.4309 11 6 4.8594 5.3673 -1.2553 12 1 5.2209 4.8413 -2.1389 13 6 5.6784 6.6432 -1.0494 14 1 6.7376 6.3909 -0.9998 15 6 5.4360 7.5991 -2.2192 16 7 5.2710 7.2885 0.2011 17 6 6.1435 8.1105 0.8632 18 1 7.1316 8.2835 0.4633 19 6 5.7595 8.7175 2.0511 20 7 4.5549 8.5072 2.5382 21 14 6.9522 9.8328 2.9582 22 1 8.2318 9.9036 2.2079 23 1 6.3686 11.1936 3.0719 24 1 7.2046 9.2873 4.3162 25 6 5.0033 4.4626 -0.0261 26 16 3.8872 -0.7517 0.0035 27 6 2.2205 -1.1370 0.0053 28 6 1.6452 -2.5299 0.0113 29 1 -0.3633 0.0048 1.0276 30 1 -0.3633 0.8876 -0.5180 31 1 -0.3634 -0.8924 -0.5096 32 1 2.1301 2.7221 -0.7228 33 1 2.1885 4.1252 0.3745 34 1 2.9836 4.0584 -2.5737 35 1 1.6114 4.9357 -1.8533 36 1 5.7391 7.1190 -3.1496 37 1 4.3767 7.8513 -2.2687 38 1 6.0191 8.5082 -2.0723 39 1 4.3833 7.1335 0.5602 40 1 4.2868 8.9310 3.3684 41 1 6.0238 4.0844 0.0340 42 1 4.7670 5.0279 0.8754 43 1 2.4565 -3.2580 0.0144 44 1 1.0317 -2.6658 0.9020 45 1 1.0316 -2.6734 -0.8780 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675626763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:32 Heat of formation + Delta-G solvation = -28.581746 kcal Electronic energy + Delta-G solvation = -27798.168024 eV Core-core repulsion = 23942.771712 eV Total energy + Delta-G solvation = -3855.396312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86511 -40.78163 -39.58982 -37.12406 -35.90563 -34.39099 -34.10526 -31.70249 -30.83174 -30.14031 -29.31464 -27.27732 -25.91182 -25.73713 -24.95507 -23.60923 -21.47264 -21.02982 -20.18215 -19.35595 -19.15217 -17.91851 -17.61154 -17.17065 -17.05372 -16.53543 -16.17325 -16.01030 -15.69281 -15.49783 -15.11454 -14.90170 -14.69182 -14.37024 -14.13950 -14.00516 -13.90593 -13.77634 -13.46958 -13.35795 -13.15633 -13.01544 -12.85497 -12.78201 -12.55991 -12.48899 -12.12574 -12.11150 -11.86271 -11.73220 -11.66550 -11.56287 -11.15170 -10.95502 -10.59600 -10.41314 -9.84584 -9.55947 -8.95490 -7.89615 -5.17187 -0.92375 -0.02258 0.59876 1.12230 1.47837 1.48352 1.58149 1.75853 1.93339 2.58040 2.72977 2.84351 3.44508 3.56166 3.71275 3.86023 3.92776 3.96910 3.98125 4.00971 4.18430 4.26691 4.44811 4.46496 4.59936 4.65754 4.69417 4.72719 4.78375 4.83633 4.84637 4.88064 4.95255 5.00761 5.08260 5.10066 5.21682 5.26786 5.42717 5.54968 5.62322 6.06836 6.23813 6.32131 6.37043 6.76588 7.38678 8.13915 8.39192 9.33899 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002781 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.640217 B =10065.187585 C =10346.540265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.420 5.420 4 C -0.061 4.061 5 C 0.591 3.409 6 O -0.567 6.567 7 N -0.587 5.587 8 C 0.053 3.947 9 C 0.047 3.953 10 O -0.382 6.382 11 C 0.092 3.908 12 H 0.078 0.922 13 C 0.174 3.826 14 H 0.063 0.937 15 C -0.147 4.147 16 N -0.727 5.727 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.968 5.968 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.298 1.298 25 C 0.094 3.906 26 S 0.266 5.734 27 C -0.222 4.222 28 C -0.078 4.078 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.376 0.624 40 H 0.248 0.752 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.309 -25.415 -10.624 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.139 5.139 4 C -0.332 4.332 5 C 0.377 3.623 6 O -0.447 6.447 7 N -0.319 5.319 8 C -0.069 4.069 9 C -0.031 4.031 10 O -0.301 6.301 11 C 0.033 3.967 12 H 0.096 0.904 13 C 0.065 3.935 14 H 0.081 0.919 15 C -0.207 4.207 16 N -0.368 5.368 17 C -0.364 4.364 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.225 1.225 25 C -0.029 4.029 26 S 0.522 5.478 27 C -0.345 4.345 28 C -0.137 4.137 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.169 0.831 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.209 0.791 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.118 0.882 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.791 -25.278 -10.505 28.751 hybrid contribution -0.424 0.994 1.171 1.594 sum -9.216 -24.284 -9.334 27.600 Atomic orbital electron populations 1.20510 0.84485 1.04735 1.03864 1.20752 1.00302 0.85746 1.04452 1.66558 1.03381 1.31656 1.12319 1.26940 0.93527 0.97930 1.14811 1.17139 0.86357 0.81970 0.76806 1.90806 1.17262 1.83747 1.52838 1.48009 1.11754 1.04529 1.67583 1.23388 0.80625 1.04003 0.98878 1.23202 0.96635 0.87462 0.95755 1.88056 1.17596 1.32466 1.91964 1.22643 0.83184 0.95318 0.95540 0.90415 1.20511 0.95864 0.90023 0.87118 0.91944 1.22140 1.01174 0.99528 0.97817 1.42548 1.15679 1.54962 1.23632 1.19666 0.95775 1.18773 1.02182 0.90488 1.25500 0.98420 1.03362 0.99648 1.69846 1.20110 1.49563 1.22424 0.85134 0.78744 0.78128 0.78154 1.18974 1.22288 1.22512 1.22238 0.94256 0.86377 0.99995 1.83918 1.03806 0.98202 1.61863 1.26150 0.97531 1.03474 1.07381 1.20527 1.01830 0.86059 1.05271 0.89999 0.90613 0.88000 0.83141 0.91912 0.91891 0.85486 0.91410 0.93604 0.94142 0.79125 0.94326 0.89409 0.91712 0.89935 0.88208 0.87679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.02 71.24 0.71 -0.09 16 2 C 0.02 0.42 6.68 41.81 0.28 0.70 16 3 N -0.42 -10.07 7.03 -178.24 -1.25 -11.32 16 4 C -0.06 -1.66 7.18 87.26 0.63 -1.03 16 5 C 0.59 20.28 7.69 86.61 0.67 20.94 16 6 O -0.57 -22.38 16.42 -4.11 -0.07 -22.44 16 7 N -0.59 -20.06 3.02 -821.40 -2.48 -22.54 16 8 C 0.05 1.53 6.22 86.36 0.54 2.06 16 9 C 0.05 1.23 6.99 72.08 0.50 1.74 16 10 O -0.38 -13.52 9.24 -148.98 -1.38 -14.90 16 11 C 0.09 3.30 2.57 30.70 0.08 3.38 16 12 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 13 C 0.17 7.09 2.80 44.99 0.13 7.22 16 14 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 15 C -0.15 -5.43 9.30 71.98 0.67 -4.76 16 16 N -0.73 -37.46 4.24 -322.94 -1.37 -38.83 16 17 C -0.23 -13.06 9.93 84.03 0.83 -12.23 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 20 N -0.97 -60.90 13.06 21.65 0.28 -60.61 16 21 Si 0.97 47.55 29.55 68.60 2.03 49.57 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 25 C 0.09 3.66 5.84 86.36 0.50 4.17 16 26 S 0.27 5.24 23.01 -56.49 -1.30 3.94 16 27 C -0.22 -3.19 6.36 24.77 0.16 -3.03 16 28 C -0.08 -0.43 9.45 71.24 0.67 0.24 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 0.48 7.33 -2.39 -0.02 0.46 16 32 H 0.15 3.81 4.39 -8.49 -0.04 3.78 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.79 7.57 -2.39 -0.02 1.77 16 38 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.38 21.27 7.08 -92.71 -0.66 20.61 16 40 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.09 3.53 7.06 -2.39 -0.02 3.51 16 42 H 0.06 3.00 6.94 -2.39 -0.02 2.99 16 43 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 44 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.10 0.22 7.93 -2.39 -0.02 0.20 16 Total: -1.00 -74.18 377.33 1.63 -72.55 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.33 Total: 29.33 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 6.84 Total: 15.24 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -4.82 Total: -133.30 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.44 Total: -37.34 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.30 Total: 3.94 kcal Total: -74.18 1.63 -72.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675626763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.968 kcal (2) G-P(sol) polarization free energy of solvation -74.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds