Wall clock time and date at job start Sat Apr 11 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.61762 * 2 1 4 4 C 1.34482 * 108.70211 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.16931 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46800 * 275.02471 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47254 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84890 * 316.19489 * 8 7 6 10 10 C 1.53787 * 113.61418 * 87.49921 * 8 7 6 11 11 C 1.53789 * 87.07916 * 139.98375 * 10 8 7 12 12 H 1.08996 * 113.60909 * 220.02162 * 11 10 8 13 13 N 1.46498 * 113.69053 * 89.12730 * 11 10 8 14 14 C 1.34778 * 119.99823 * 107.46252 * 13 11 10 15 15 O 1.21281 * 120.00093 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99966 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47173 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00323 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00267 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47246 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47080 * 119.99803 * 22 20 18 25 25 H 1.48504 * 109.46681 * 239.99212 * 22 20 18 26 26 C 1.53780 * 113.61900 * 184.99935 * 8 7 6 27 27 C 1.34339 * 107.66427 * 0.26337 * 4 3 2 28 28 O 1.33975 * 125.61837 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47201 * 89.99548 * 1 2 3 30 30 H 1.09005 * 109.47206 * 209.99903 * 1 2 3 31 31 H 1.08993 * 109.46927 * 329.99302 * 1 2 3 32 32 H 1.08995 * 109.47455 * 155.02409 * 5 4 3 33 33 H 1.09003 * 109.47449 * 35.01642 * 5 4 3 34 34 H 1.00908 * 110.99583 * 303.94914 * 6 5 4 35 35 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 36 36 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 37 37 H 1.08998 * 113.61477 * 254.53206 * 10 8 7 38 38 H 1.08992 * 113.61461 * 25.43734 * 10 8 7 39 39 H 0.96994 * 120.00341 * 287.46466 * 13 11 10 40 40 H 1.09004 * 109.47256 * 300.00375 * 16 14 13 41 41 H 1.08997 * 109.47401 * 60.00081 * 16 14 13 42 42 H 0.96998 * 120.00525 * 179.97438 * 21 20 18 43 43 H 1.09004 * 113.61169 * 334.56803 * 26 8 7 44 44 H 1.09001 * 113.61588 * 105.38140 * 26 8 7 45 45 H 1.07997 * 126.43590 * 179.73436 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 4.7571 1.5727 -0.0002 6 7 5.0753 1.9647 -1.3798 7 6 6.2477 2.8490 -1.4186 8 6 6.5479 3.2345 -2.8685 9 1 6.4834 2.3889 -3.5533 10 6 5.7792 4.4774 -3.3473 11 6 7.0684 4.8983 -4.0726 12 1 7.2745 5.9668 -4.0117 13 7 7.1736 4.3754 -5.4370 14 6 7.0169 5.2025 -6.4896 15 8 6.7893 6.3797 -6.3072 16 6 7.1246 4.6646 -7.8932 17 16 6.8691 6.0102 -9.0763 18 6 7.0432 5.1245 -10.5895 19 1 7.2473 4.0641 -10.5741 20 6 6.9190 5.7897 -11.8013 21 7 6.6707 7.0822 -11.8202 22 14 7.1044 4.8507 -13.4056 23 1 7.3789 3.4209 -13.1133 24 1 5.8504 4.9636 -14.1929 25 1 8.2317 5.4215 -14.1857 26 6 7.8330 4.0630 -3.0322 27 6 3.5698 -0.6757 -0.0068 28 8 2.2873 -1.0891 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 5.6072 1.0459 0.4331 33 1 4.5422 2.4635 0.5901 34 1 5.2154 1.1533 -1.9630 35 1 6.0436 3.7486 -0.8379 36 1 7.1080 2.3306 -0.9953 37 1 4.9541 4.2476 -4.0213 38 1 5.4926 5.1513 -2.5400 39 1 7.3559 3.4340 -5.5830 40 1 8.1146 4.2333 -8.0421 41 1 6.3668 3.8963 -8.0470 42 1 6.5843 7.5472 -12.6671 43 1 8.1078 4.6237 -2.1387 44 1 8.6663 3.4984 -3.4505 45 1 4.4469 -1.3057 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675717467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:35 Heat of formation + Delta-G solvation = 3.548202 kcal Electronic energy + Delta-G solvation = -25147.929197 eV Core-core repulsion = 21293.926144 eV Total energy + Delta-G solvation = -3854.003053 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.71607 -40.12739 -38.24457 -36.64261 -34.87657 -33.17784 -32.43804 -32.40274 -29.63899 -28.74111 -27.25657 -25.81502 -25.48953 -24.90319 -22.33996 -22.02472 -21.39797 -20.74669 -19.25813 -17.82742 -17.59239 -17.15540 -16.50318 -16.09857 -15.96344 -15.41804 -15.28105 -14.87985 -14.79209 -14.62127 -14.51685 -14.13999 -13.87340 -13.55992 -13.43402 -13.12172 -13.04834 -12.81116 -12.57198 -12.52530 -12.26525 -12.13188 -11.66383 -11.48050 -11.08836 -11.06061 -11.00340 -10.86715 -10.74486 -10.55149 -10.32051 -9.78403 -9.36694 -9.22782 -9.06267 -8.83702 -8.74890 -8.20959 -6.47924 -6.20246 -3.90490 1.02745 2.21454 2.35166 3.04960 3.11019 3.22527 3.29240 3.34009 3.52829 3.73356 3.82129 4.21710 4.32712 4.39637 4.41174 4.53483 4.64827 4.77872 4.83895 4.91405 4.94969 5.07452 5.14585 5.14996 5.17755 5.23230 5.27902 5.32602 5.49477 5.52891 5.55699 5.61069 5.63290 5.87209 5.88269 5.90948 6.01157 6.06224 6.15047 6.17856 6.56793 6.77713 6.93789 7.38154 7.61342 7.75973 8.36918 8.65887 9.25145 10.87250 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.001667 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.549730 B =16791.702411 C =18012.239274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.189 3.811 3 N -0.466 5.466 4 C -0.005 4.005 5 C 0.140 3.860 6 N -0.680 5.680 7 C 0.071 3.929 8 C -0.107 4.107 9 H 0.089 0.911 10 C -0.136 4.136 11 C 0.121 3.879 12 H 0.101 0.899 13 N -0.721 5.721 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.141 4.141 27 C -0.076 4.076 28 O -0.204 6.204 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.340 0.660 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 -17.913 28.252 33.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.196 5.196 4 C -0.125 4.125 5 C 0.011 3.989 6 N -0.312 5.312 7 C -0.058 4.058 8 C -0.126 4.126 9 H 0.107 0.893 10 C -0.175 4.175 11 C 0.015 3.985 12 H 0.119 0.881 13 N -0.374 5.374 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.180 4.180 27 C -0.147 4.147 28 O -0.091 6.091 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.158 0.842 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.231 0.769 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.571 -14.665 28.439 32.479 hybrid contribution 1.548 -3.865 -1.156 4.321 sum -4.023 -18.529 27.283 33.225 Atomic orbital electron populations 1.20276 0.81243 1.05095 1.04921 1.26423 0.96659 0.78556 1.00180 1.70379 1.01563 1.29984 1.17696 1.21617 0.93331 0.92208 1.05346 1.20126 0.90485 0.97115 0.91182 1.60371 1.39930 1.21964 1.08891 1.21998 0.90056 0.96918 0.96783 1.22572 0.96583 0.97713 0.95754 0.89320 1.23389 0.97505 0.96541 1.00083 1.21750 0.96214 0.99357 0.81193 0.88082 1.45687 1.74898 1.12082 1.04721 1.20315 0.75302 0.86260 0.86093 1.90698 1.46182 1.16297 1.85818 1.23531 1.04934 1.06380 0.95554 1.85407 1.93475 1.08439 0.96011 1.22913 1.56504 0.97187 0.91722 0.90892 1.24994 0.94592 0.95055 0.98979 1.70026 1.45541 1.07832 1.26867 0.86117 0.77957 0.79570 0.81845 1.19640 1.20565 1.20576 1.23352 0.96723 0.98499 0.99399 1.24772 0.85115 0.96136 1.08703 1.84445 1.16853 1.37901 1.69884 0.88739 0.89392 0.88017 0.93519 0.89151 0.84179 0.90486 0.95102 0.90917 0.89363 0.76918 0.89254 0.89236 0.92242 0.88892 0.90918 0.77082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.19 1.63 8.34 -12.95 -0.11 1.52 16 3 N -0.47 -5.04 11.29 -7.35 -0.08 -5.12 16 4 C 0.00 -0.04 6.62 -82.81 -0.55 -0.59 16 5 C 0.14 1.02 6.23 -4.98 -0.03 0.98 16 6 N -0.68 -5.39 6.49 -115.06 -0.75 -6.14 16 7 C 0.07 0.50 5.52 -3.83 -0.02 0.48 16 8 C -0.11 -0.86 3.78 -89.81 -0.34 -1.20 16 9 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 10 C -0.14 -1.47 7.43 -25.91 -0.19 -1.66 16 11 C 0.12 1.44 4.32 -67.12 -0.29 1.15 16 12 H 0.10 1.42 7.46 -51.93 -0.39 1.03 16 13 N -0.72 -9.78 5.27 -53.02 -0.28 -10.05 16 14 C 0.53 10.14 7.85 -10.99 -0.09 10.05 16 15 O -0.52 -11.95 15.46 5.56 0.09 -11.87 16 16 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.38 9.50 30.94 0.29 -15.08 16 19 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 22 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.14 -1.15 7.39 -25.92 -0.19 -1.34 16 27 C -0.08 -0.54 12.08 29.36 0.35 -0.18 16 28 O -0.20 -1.74 10.78 5.35 0.06 -1.68 16 29 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.34 2.45 8.72 -39.29 -0.34 2.10 16 35 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 36 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.90 7.90 -51.93 -0.41 0.49 16 39 H 0.40 4.23 8.70 -40.82 -0.36 3.88 16 40 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 41 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.21 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -37.40 397.63 -9.07 -46.47 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.94 Total: 2.00 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.66 Total: -6.66 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.38 Total: -46.93 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.14 Total: -13.55 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.40 -9.07 -46.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675717467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.017 kcal (2) G-P(sol) polarization free energy of solvation -37.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds