Wall clock time and date at job start Sat Apr 11 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30250 * 125.61762 * 2 1 4 4 C 1.34482 * 108.70211 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.16931 * 180.02562 * 4 3 2 6 6 N 1.46904 * 109.46800 * 275.02471 * 5 4 3 7 7 C 1.46899 * 111.00029 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47254 * 179.97438 * 7 6 5 9 9 H 1.09003 * 112.84890 * 316.19489 * 8 7 6 10 10 C 1.53787 * 113.61418 * 87.49921 * 8 7 6 11 11 C 1.53789 * 87.07916 * 139.98375 * 10 8 7 12 12 H 1.08996 * 113.60909 * 220.02162 * 11 10 8 13 13 N 1.46498 * 113.69053 * 89.12730 * 11 10 8 14 14 C 1.34778 * 119.99823 * 107.46252 * 13 11 10 15 15 O 1.21281 * 120.00093 * 0.02562 * 14 13 11 16 16 C 1.50698 * 119.99966 * 180.02562 * 14 13 11 17 17 S 1.80995 * 109.47173 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00323 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99918 * 359.97438 * 18 17 16 20 20 C 1.38797 * 120.00267 * 180.02562 * 18 17 16 21 21 N 1.31627 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99858 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47246 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47080 * 119.99803 * 22 20 18 25 25 H 1.48504 * 109.46681 * 239.99212 * 22 20 18 26 26 C 1.53780 * 113.61900 * 184.99935 * 8 7 6 27 27 C 1.34339 * 107.66427 * 0.26337 * 4 3 2 28 28 O 1.33975 * 125.61837 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47201 * 89.99548 * 1 2 3 30 30 H 1.09005 * 109.47206 * 209.99903 * 1 2 3 31 31 H 1.08993 * 109.46927 * 329.99302 * 1 2 3 32 32 H 1.08995 * 109.47455 * 155.02409 * 5 4 3 33 33 H 1.09003 * 109.47449 * 35.01642 * 5 4 3 34 34 H 1.00908 * 110.99583 * 303.94914 * 6 5 4 35 35 H 1.09002 * 109.47043 * 299.99792 * 7 6 5 36 36 H 1.09001 * 109.47354 * 59.99854 * 7 6 5 37 37 H 1.08998 * 113.61477 * 254.53206 * 10 8 7 38 38 H 1.08992 * 113.61461 * 25.43734 * 10 8 7 39 39 H 0.96994 * 120.00341 * 287.46466 * 13 11 10 40 40 H 1.09004 * 109.47256 * 300.00375 * 16 14 13 41 41 H 1.08997 * 109.47401 * 60.00081 * 16 14 13 42 42 H 0.96998 * 120.00525 * 179.97438 * 21 20 18 43 43 H 1.09004 * 113.61169 * 334.56803 * 26 8 7 44 44 H 1.09001 * 113.61588 * 105.38140 * 26 8 7 45 45 H 1.07997 * 126.43590 * 179.73436 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 4.7571 1.5727 -0.0002 6 7 5.0753 1.9647 -1.3798 7 6 6.2477 2.8490 -1.4186 8 6 6.5479 3.2345 -2.8685 9 1 6.4834 2.3889 -3.5533 10 6 5.7792 4.4774 -3.3473 11 6 7.0684 4.8983 -4.0726 12 1 7.2745 5.9668 -4.0117 13 7 7.1736 4.3754 -5.4370 14 6 7.0169 5.2025 -6.4896 15 8 6.7893 6.3797 -6.3072 16 6 7.1246 4.6646 -7.8932 17 16 6.8691 6.0102 -9.0763 18 6 7.0432 5.1245 -10.5895 19 1 7.2473 4.0641 -10.5741 20 6 6.9190 5.7897 -11.8013 21 7 6.6707 7.0822 -11.8202 22 14 7.1044 4.8507 -13.4056 23 1 7.3789 3.4209 -13.1133 24 1 5.8504 4.9636 -14.1929 25 1 8.2317 5.4215 -14.1857 26 6 7.8330 4.0630 -3.0322 27 6 3.5698 -0.6757 -0.0068 28 8 2.2873 -1.0891 -0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 5.6072 1.0459 0.4331 33 1 4.5422 2.4635 0.5901 34 1 5.2154 1.1533 -1.9630 35 1 6.0436 3.7486 -0.8379 36 1 7.1080 2.3306 -0.9953 37 1 4.9541 4.2476 -4.0213 38 1 5.4926 5.1513 -2.5400 39 1 7.3559 3.4340 -5.5830 40 1 8.1146 4.2333 -8.0421 41 1 6.3668 3.8963 -8.0470 42 1 6.5843 7.5472 -12.6671 43 1 8.1078 4.6237 -2.1387 44 1 8.6663 3.4984 -3.4505 45 1 4.4469 -1.3057 -0.0129 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675717467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:34 Heat of formation + Delta-G solvation = -26.707131 kcal Electronic energy + Delta-G solvation = -25149.241167 eV Core-core repulsion = 21293.926144 eV Total energy + Delta-G solvation = -3855.315023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.28849 -41.21992 -39.46397 -37.30027 -35.54220 -34.59460 -34.31634 -33.03066 -30.88613 -29.58037 -27.92322 -27.62907 -26.60236 -25.58624 -23.09696 -22.62039 -22.15828 -21.89872 -20.20633 -19.82575 -18.19362 -17.88289 -17.74157 -17.08858 -16.88375 -16.74468 -16.47391 -16.26595 -15.77154 -15.74120 -15.25657 -15.11173 -14.86687 -14.60156 -14.46090 -14.04583 -13.88570 -13.83361 -13.44730 -13.31095 -13.16587 -13.16305 -12.91652 -12.90730 -12.60024 -12.57641 -12.14303 -11.81376 -11.70191 -11.51763 -11.35427 -11.16190 -11.12690 -10.95008 -10.27632 -10.02250 -9.76710 -9.29510 -8.67342 -8.35026 -6.13326 0.48496 1.26562 1.41357 1.46843 1.58102 1.59590 1.61579 1.87431 2.25198 2.29050 2.99113 3.05144 3.26366 3.31844 3.60241 3.74051 3.88393 3.89115 3.96138 4.00625 4.05783 4.30232 4.37777 4.49253 4.49472 4.53394 4.59270 4.63132 4.66271 4.72815 4.83247 4.85993 4.90077 4.93639 4.98467 5.08044 5.14019 5.24463 5.32180 5.35410 5.41786 5.69270 6.04722 6.19779 6.43924 6.52402 6.80889 7.06205 7.26269 8.74540 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014049 B = 0.001667 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.549730 B =16791.702411 C =18012.239274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.179 3.821 3 N -0.510 5.510 4 C -0.032 4.032 5 C 0.146 3.854 6 N -0.697 5.697 7 C 0.077 3.923 8 C -0.092 4.092 9 H 0.095 0.905 10 C -0.139 4.139 11 C 0.103 3.897 12 H 0.075 0.925 13 N -0.694 5.694 14 C 0.535 3.465 15 O -0.567 6.567 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.273 1.273 26 C -0.119 4.119 27 C -0.067 4.067 28 O -0.213 6.213 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.345 0.655 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.415 0.585 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.271 0.729 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.370 -21.358 29.051 36.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.028 4.028 3 N -0.241 5.241 4 C -0.151 4.151 5 C 0.017 3.983 6 N -0.330 5.330 7 C -0.052 4.052 8 C -0.110 4.110 9 H 0.114 0.886 10 C -0.177 4.177 11 C -0.003 4.003 12 H 0.093 0.907 13 N -0.347 5.347 14 C 0.321 3.679 15 O -0.445 6.445 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.157 4.157 27 C -0.138 4.138 28 O -0.100 6.100 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.253 0.747 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -4.470 -18.166 29.285 34.750 hybrid contribution 1.180 -2.817 -1.265 3.306 sum -3.290 -20.984 28.019 35.160 Atomic orbital electron populations 1.20471 0.78938 1.06295 1.05773 1.27160 0.97972 0.78237 0.99430 1.70358 1.02963 1.31454 1.19301 1.21964 0.93203 0.93360 1.06569 1.20102 0.90852 0.96634 0.90734 1.60316 1.40599 1.22517 1.09549 1.21925 0.90608 0.96900 0.95755 1.22477 0.95296 0.96567 0.96710 0.88639 1.23391 0.96256 0.98467 0.99631 1.22002 0.98608 0.98809 0.80851 0.90684 1.45408 1.72609 1.12357 1.04329 1.20100 0.75250 0.85950 0.86626 1.90686 1.48984 1.18480 1.86364 1.23367 1.06712 1.03584 0.94335 1.85605 1.94015 1.13859 0.99103 1.23242 1.56525 0.97585 0.92008 0.89857 1.26151 0.93827 0.96024 1.03250 1.70191 1.46663 1.09887 1.28068 0.84886 0.78095 0.78559 0.76274 1.17973 1.19962 1.19866 1.23277 0.96805 0.97448 0.98220 1.25457 0.85510 0.96081 1.06764 1.84460 1.17550 1.38062 1.69955 0.87923 0.87294 0.87685 0.90823 0.90605 0.83677 0.90986 0.92870 0.93381 0.89124 0.74734 0.87021 0.87342 0.91985 0.87159 0.89380 0.73479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.18 3.00 8.34 88.34 0.74 3.74 16 3 N -0.51 -11.01 11.29 -291.97 -3.30 -14.31 16 4 C -0.03 -0.53 6.62 41.26 0.27 -0.26 16 5 C 0.15 1.88 6.23 85.55 0.53 2.42 16 6 N -0.70 -9.75 6.49 -517.93 -3.36 -13.12 16 7 C 0.08 0.86 5.52 86.30 0.48 1.34 16 8 C -0.09 -1.23 3.78 -10.27 -0.04 -1.27 16 9 H 0.10 1.20 8.13 -2.39 -0.02 1.18 16 10 C -0.14 -2.90 7.43 31.13 0.23 -2.67 16 11 C 0.10 2.36 4.32 45.52 0.20 2.55 16 12 H 0.07 2.15 7.46 -2.39 -0.02 2.13 16 13 N -0.69 -17.94 5.27 -440.03 -2.32 -20.25 16 14 C 0.53 20.32 7.85 87.66 0.69 21.01 16 15 O -0.57 -27.24 15.46 -3.03 -0.05 -27.29 16 16 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 17 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 18 C -0.55 -31.50 9.50 67.95 0.65 -30.86 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 22 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.12 -1.58 7.39 31.12 0.23 -1.35 16 27 C -0.07 -0.83 12.08 66.93 0.81 -0.02 16 28 O -0.21 -3.39 10.78 -3.76 -0.04 -3.43 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.34 4.16 8.72 -89.69 -0.78 3.38 16 35 H 0.07 0.91 7.85 -2.39 -0.02 0.89 16 36 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.84 7.90 -2.39 -0.02 1.82 16 39 H 0.42 7.73 8.70 -92.71 -0.81 6.92 16 40 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 41 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.11 1.17 8.10 -2.38 -0.02 1.15 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.25 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -85.57 397.63 -2.05 -87.62 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -0.57 Total: 19.60 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 6.43 Total: -8.67 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -8.69 Total: -103.98 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.09 Total: -30.72 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -85.57 -2.05 -87.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675717467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.918 kcal (2) G-P(sol) polarization free energy of solvation -85.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds