Wall clock time and date at job start Sat Apr 11 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30255 * 125.62160 * 2 1 4 4 C 1.34476 * 108.70544 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.17109 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.46986 * 274.99998 * 5 4 3 7 7 C 1.48529 * 111.00172 * 287.39424 * 6 5 4 8 8 C 1.54937 * 103.23160 * 200.27751 * 7 6 5 9 9 C 1.54598 * 102.91856 * 37.41355 * 8 7 6 10 10 C 1.53001 * 110.39123 * 219.08492 * 9 8 7 11 11 N 1.46494 * 110.30850 * 96.96056 * 9 8 7 12 12 C 1.34775 * 120.00113 * 64.28260 * 11 9 8 13 13 O 1.21282 * 120.00198 * 0.02562 * 12 11 9 14 14 C 1.50706 * 120.00145 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47277 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00076 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99975 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.99927 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47123 * 90.00032 * 20 18 16 22 22 H 1.48498 * 109.47124 * 210.00294 * 20 18 16 23 23 H 1.48505 * 109.47035 * 330.00350 * 20 18 16 24 24 C 1.47908 * 111.00167 * 169.99714 * 6 5 4 25 25 C 1.34334 * 107.66509 * 0.02562 * 4 3 2 26 26 O 1.33967 * 125.61902 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46961 * 89.99646 * 1 2 3 28 28 H 1.08986 * 109.47159 * 209.99576 * 1 2 3 29 29 H 1.09003 * 109.47151 * 330.00247 * 1 2 3 30 30 H 1.09002 * 109.47606 * 34.99419 * 5 4 3 31 31 H 1.08999 * 109.47710 * 155.00031 * 5 4 3 32 32 H 1.08999 * 110.66516 * 318.71470 * 7 6 5 33 33 H 1.09005 * 110.66872 * 81.83980 * 7 6 5 34 34 H 1.08995 * 110.72511 * 279.05824 * 8 7 6 35 35 H 1.08992 * 110.88014 * 155.84173 * 8 7 6 36 36 H 1.09001 * 109.47019 * 175.76632 * 10 9 8 37 37 H 1.09000 * 109.47213 * 295.76448 * 10 9 8 38 38 H 1.08997 * 109.47362 * 55.76556 * 10 9 8 39 39 H 0.96999 * 120.00161 * 244.28045 * 11 9 8 40 40 H 1.08999 * 109.47094 * 300.00105 * 14 12 11 41 41 H 1.09002 * 109.46592 * 60.00095 * 14 12 11 42 42 H 0.97000 * 120.00382 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.91430 * 265.19893 * 24 6 5 44 44 H 1.08992 * 109.91346 * 26.49419 * 24 6 5 45 45 H 1.08009 * 126.44086 * 179.73790 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 4.7571 1.5726 -0.0002 6 7 5.0757 1.9641 -1.3798 7 6 5.6631 0.8272 -2.1336 8 6 6.3956 1.5217 -3.3091 9 6 6.9659 2.8004 -2.6538 10 6 6.8499 3.9877 -3.6118 11 7 8.3641 2.5940 -2.2683 12 6 9.2980 2.3707 -3.2140 13 8 8.9809 2.3411 -4.3843 14 6 10.7364 2.1588 -2.8175 15 16 11.7374 1.8868 -4.3008 16 6 13.3238 1.6735 -3.5645 17 1 13.4333 1.7306 -2.4915 18 6 14.4327 1.4312 -4.3633 19 7 14.2993 1.3612 -5.6709 20 14 16.1148 1.2059 -3.5827 21 1 16.3304 -0.2314 -3.2776 22 1 17.1639 1.6750 -4.5233 23 1 16.1874 1.9948 -2.3267 24 6 6.0962 3.0346 -1.4047 25 6 3.5697 -0.6757 -0.0015 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 4.5422 2.4636 0.5898 31 1 5.6071 1.0459 0.4335 32 1 6.3692 0.2770 -1.5116 33 1 4.8800 0.1662 -2.5051 34 1 5.6947 1.7755 -4.1043 35 1 7.1995 0.8929 -3.6917 36 1 7.1861 4.8945 -3.1090 37 1 7.4701 3.8079 -4.4900 38 1 5.8109 4.1065 -3.9191 39 1 8.6178 2.6180 -1.3324 40 1 11.1014 3.0400 -2.2899 41 1 10.8090 1.2886 -2.1651 42 1 15.0744 1.1922 -6.2292 43 1 5.6110 4.0086 -1.4673 44 1 6.7127 2.9807 -0.5075 45 1 4.4469 -1.3059 -0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699810240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:20 Heat of formation + Delta-G solvation = -3.355320 kcal Electronic energy + Delta-G solvation = -26528.629337 eV Core-core repulsion = 22674.326925 eV Total energy + Delta-G solvation = -3854.302412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.63465 -40.37603 -38.31918 -35.62377 -34.41546 -32.77818 -32.44581 -31.59468 -29.99076 -28.76857 -28.37025 -26.69114 -25.50574 -24.86562 -22.31784 -21.67230 -21.29145 -20.81420 -19.36624 -17.89096 -17.46657 -17.12509 -16.59733 -16.12108 -15.95459 -15.11697 -15.05396 -14.88165 -14.82063 -14.48868 -14.04841 -13.92824 -13.53937 -13.50223 -13.23875 -13.17405 -12.97365 -12.75124 -12.58303 -12.41232 -11.96777 -11.90200 -11.77371 -11.42481 -11.25066 -11.08487 -11.05931 -11.04527 -10.86744 -10.77655 -10.75751 -9.83090 -9.27289 -9.12923 -9.08553 -8.88475 -8.72420 -8.25392 -6.51513 -6.23442 -3.93915 1.12264 2.28530 2.43842 2.99582 3.07478 3.20686 3.26155 3.29906 3.57604 3.66234 3.87097 4.18705 4.26854 4.41100 4.47086 4.65463 4.78417 4.85672 4.93950 5.02367 5.03409 5.11770 5.12295 5.14990 5.22276 5.28537 5.32994 5.55105 5.58749 5.59564 5.61300 5.74040 5.83547 5.85869 5.86680 5.95527 5.99433 6.11457 6.15976 6.41068 6.45257 6.64321 6.80914 7.45596 7.57703 7.70763 8.33301 8.61626 9.21981 10.83916 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.001957 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.533912 B =14307.741173 C =14803.797239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.185 3.815 3 N -0.467 5.467 4 C 0.003 3.997 5 C 0.126 3.874 6 N -0.507 5.507 7 C 0.033 3.967 8 C -0.123 4.123 9 C 0.169 3.831 10 C -0.158 4.158 11 N -0.732 5.732 12 C 0.534 3.466 13 O -0.510 6.510 14 C -0.155 4.155 15 S -0.058 6.058 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.039 3.961 25 C -0.073 4.073 26 O -0.204 6.204 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.395 0.605 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.272 -1.399 14.517 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.022 4.022 3 N -0.197 5.197 4 C -0.117 4.117 5 C -0.003 4.003 6 N -0.231 5.231 7 C -0.094 4.094 8 C -0.162 4.162 9 C 0.083 3.917 10 C -0.216 4.216 11 N -0.387 5.387 12 C 0.321 3.679 13 O -0.384 6.384 14 C -0.305 4.305 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.089 4.089 25 C -0.144 4.144 26 O -0.090 6.090 27 H 0.111 0.889 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.229 0.771 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.070 0.930 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -26.460 -0.711 12.157 29.128 hybrid contribution 2.767 -1.141 2.774 4.081 sum -23.692 -1.852 14.932 28.066 Atomic orbital electron populations 1.20244 0.81372 1.05007 1.04757 1.26361 0.96592 0.78663 1.00569 1.70337 1.01565 1.30038 1.17807 1.21453 0.93028 0.92163 1.05059 1.20467 0.91409 0.97626 0.90768 1.64771 1.38689 1.07666 1.11961 1.23334 0.97291 0.93385 0.95425 1.22859 1.00056 0.96090 0.97152 1.21008 0.80655 0.96007 0.94069 1.22195 1.02693 0.95953 1.00792 1.46277 1.07033 1.75594 1.09828 1.20243 0.86752 0.75271 0.85657 1.90667 1.81528 1.48269 1.17944 1.23554 0.94986 1.04599 1.07397 1.85378 1.01057 1.93333 1.03375 1.22868 0.93295 1.56856 0.95440 0.90989 1.24985 0.99175 0.94640 0.94754 1.70012 1.30983 1.45843 1.03410 0.86178 0.81890 0.78544 0.78946 1.20288 1.20720 1.19714 1.23172 0.92485 0.96794 0.96464 1.24781 0.84976 0.96188 1.08447 1.84439 1.16881 1.37823 1.69893 0.88895 0.89449 0.88128 0.88900 0.92602 0.93539 0.90213 0.89935 0.89541 0.92702 0.89554 0.91690 0.77091 0.89341 0.89453 0.92171 0.88758 0.92953 0.77129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.00 0.38 0.13 16 2 C 0.19 1.68 8.34 -12.95 -0.11 1.57 16 3 N -0.47 -5.25 11.29 -7.36 -0.08 -5.33 16 4 C 0.00 0.03 6.24 -82.81 -0.52 -0.48 16 5 C 0.13 1.10 5.25 -4.98 -0.03 1.08 16 6 N -0.51 -5.09 5.23 -231.89 -1.21 -6.30 16 7 C 0.03 0.34 6.04 -1.90 -0.01 0.33 16 8 C -0.12 -1.53 5.85 -24.87 -0.15 -1.67 16 9 C 0.17 2.00 0.94 -130.46 -0.12 1.88 16 10 C -0.16 -2.00 8.15 37.16 0.30 -1.70 16 11 N -0.73 -9.39 5.15 -46.35 -0.24 -9.63 16 12 C 0.53 9.47 7.04 -10.98 -0.08 9.39 16 13 O -0.51 -10.82 12.75 5.56 0.07 -10.74 16 14 C -0.15 -3.04 6.16 36.01 0.22 -2.81 16 15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 16 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.04 0.37 6.12 -2.75 -0.02 0.35 16 25 C -0.07 -0.63 11.99 29.35 0.35 -0.27 16 26 O -0.20 -1.93 10.78 5.36 0.06 -1.87 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.23 8.14 -51.94 -0.42 -0.19 16 29 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 31 H 0.06 0.40 7.83 -51.93 -0.41 0.00 16 32 H 0.05 0.45 7.81 -51.93 -0.41 0.04 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.04 7.85 -51.93 -0.41 0.64 16 35 H 0.09 1.29 6.81 -51.93 -0.35 0.94 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.38 6.03 -51.93 -0.31 1.07 16 38 H 0.06 0.74 8.11 -51.93 -0.42 0.31 16 39 H 0.39 3.98 8.09 -40.82 -0.33 3.65 16 40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 41 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.09 0.86 7.68 -51.93 -0.40 0.46 16 44 H 0.05 0.41 7.09 -51.93 -0.37 0.05 16 45 H 0.21 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -35.57 384.05 -8.44 -44.02 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.75 Total: 1.91 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 0.43 Total: -5.08 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.80 Total: -46.52 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.13 Total: -12.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.57 -8.44 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699810240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.663 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds