Wall clock time and date at job start Sat Apr 11 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30255 * 125.62160 * 2 1 4 4 C 1.34476 * 108.70544 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.17109 * 180.02562 * 4 3 2 6 6 N 1.46903 * 109.46986 * 274.99998 * 5 4 3 7 7 C 1.48529 * 111.00172 * 287.39424 * 6 5 4 8 8 C 1.54937 * 103.23160 * 200.27751 * 7 6 5 9 9 C 1.54598 * 102.91856 * 37.41355 * 8 7 6 10 10 C 1.53001 * 110.39123 * 219.08492 * 9 8 7 11 11 N 1.46494 * 110.30850 * 96.96056 * 9 8 7 12 12 C 1.34775 * 120.00113 * 64.28260 * 11 9 8 13 13 O 1.21282 * 120.00198 * 0.02562 * 12 11 9 14 14 C 1.50706 * 120.00145 * 179.97438 * 12 11 9 15 15 S 1.81000 * 109.47277 * 180.02562 * 14 12 11 16 16 C 1.76197 * 100.00076 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99975 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.99927 * 179.97438 * 16 15 14 19 19 N 1.31628 * 120.00347 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47123 * 90.00032 * 20 18 16 22 22 H 1.48498 * 109.47124 * 210.00294 * 20 18 16 23 23 H 1.48505 * 109.47035 * 330.00350 * 20 18 16 24 24 C 1.47908 * 111.00167 * 169.99714 * 6 5 4 25 25 C 1.34334 * 107.66509 * 0.02562 * 4 3 2 26 26 O 1.33967 * 125.61902 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.46961 * 89.99646 * 1 2 3 28 28 H 1.08986 * 109.47159 * 209.99576 * 1 2 3 29 29 H 1.09003 * 109.47151 * 330.00247 * 1 2 3 30 30 H 1.09002 * 109.47606 * 34.99419 * 5 4 3 31 31 H 1.08999 * 109.47710 * 155.00031 * 5 4 3 32 32 H 1.08999 * 110.66516 * 318.71470 * 7 6 5 33 33 H 1.09005 * 110.66872 * 81.83980 * 7 6 5 34 34 H 1.08995 * 110.72511 * 279.05824 * 8 7 6 35 35 H 1.08992 * 110.88014 * 155.84173 * 8 7 6 36 36 H 1.09001 * 109.47019 * 175.76632 * 10 9 8 37 37 H 1.09000 * 109.47213 * 295.76448 * 10 9 8 38 38 H 1.08997 * 109.47362 * 55.76556 * 10 9 8 39 39 H 0.96999 * 120.00161 * 244.28045 * 11 9 8 40 40 H 1.08999 * 109.47094 * 300.00105 * 14 12 11 41 41 H 1.09002 * 109.46592 * 60.00095 * 14 12 11 42 42 H 0.97000 * 120.00382 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.91430 * 265.19893 * 24 6 5 44 44 H 1.08992 * 109.91346 * 26.49419 * 24 6 5 45 45 H 1.08009 * 126.44086 * 179.73790 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 4.7571 1.5726 -0.0002 6 7 5.0757 1.9641 -1.3798 7 6 5.6631 0.8272 -2.1336 8 6 6.3956 1.5217 -3.3091 9 6 6.9659 2.8004 -2.6538 10 6 6.8499 3.9877 -3.6118 11 7 8.3641 2.5940 -2.2683 12 6 9.2980 2.3707 -3.2140 13 8 8.9809 2.3411 -4.3843 14 6 10.7364 2.1588 -2.8175 15 16 11.7374 1.8868 -4.3008 16 6 13.3238 1.6735 -3.5645 17 1 13.4333 1.7306 -2.4915 18 6 14.4327 1.4312 -4.3633 19 7 14.2993 1.3612 -5.6709 20 14 16.1148 1.2059 -3.5827 21 1 16.3304 -0.2314 -3.2776 22 1 17.1639 1.6750 -4.5233 23 1 16.1874 1.9948 -2.3267 24 6 6.0962 3.0346 -1.4047 25 6 3.5697 -0.6757 -0.0015 26 8 2.2872 -1.0890 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 4.5422 2.4636 0.5898 31 1 5.6071 1.0459 0.4335 32 1 6.3692 0.2770 -1.5116 33 1 4.8800 0.1662 -2.5051 34 1 5.6947 1.7755 -4.1043 35 1 7.1995 0.8929 -3.6917 36 1 7.1861 4.8945 -3.1090 37 1 7.4701 3.8079 -4.4900 38 1 5.8109 4.1065 -3.9191 39 1 8.6178 2.6180 -1.3324 40 1 11.1014 3.0400 -2.2899 41 1 10.8090 1.2886 -2.1651 42 1 15.0744 1.1922 -6.2292 43 1 5.6110 4.0086 -1.4673 44 1 6.7127 2.9807 -0.5075 45 1 4.4469 -1.3059 -0.0061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699810240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:19 Heat of formation + Delta-G solvation = -31.934444 kcal Electronic energy + Delta-G solvation = -26529.868621 eV Core-core repulsion = 22674.326925 eV Total energy + Delta-G solvation = -3855.541696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.28011 -41.47860 -39.46732 -36.47197 -35.32661 -34.58480 -33.58712 -32.53764 -30.94902 -29.96528 -29.19229 -27.65594 -27.39938 -25.73316 -23.16269 -22.46364 -22.17242 -21.66241 -20.55391 -19.81291 -18.20536 -17.81793 -17.77507 -17.31365 -16.88063 -16.79988 -16.30514 -16.19230 -15.71840 -15.60613 -15.15928 -14.82238 -14.59351 -14.49305 -14.30439 -14.11047 -13.85755 -13.75452 -13.56567 -13.27541 -13.16080 -13.09604 -12.89575 -12.75646 -12.61526 -12.58584 -12.42371 -12.06755 -11.95520 -11.84704 -11.72201 -11.47689 -11.14459 -10.69480 -10.26305 -10.10311 -9.76287 -9.44331 -8.65382 -8.34801 -6.12151 0.49584 1.27019 1.41733 1.46761 1.56438 1.61973 1.65981 1.88584 2.23987 2.29142 2.99358 3.00621 3.11080 3.32776 3.41065 3.63448 3.79566 3.94249 3.97227 4.01258 4.22700 4.28515 4.32384 4.35612 4.46179 4.51035 4.53744 4.62715 4.66710 4.72877 4.79470 4.80065 4.85346 4.89661 4.97869 5.02828 5.07433 5.13157 5.33969 5.36923 5.41629 5.51709 5.82388 5.92952 6.19521 6.55441 6.80918 7.06724 7.30156 8.74223 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024331 B = 0.001957 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.533912 B =14307.741173 C =14803.797239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.180 3.820 3 N -0.504 5.504 4 C -0.018 4.018 5 C 0.128 3.872 6 N -0.517 5.517 7 C 0.045 3.955 8 C -0.124 4.124 9 C 0.168 3.832 10 C -0.155 4.155 11 N -0.707 5.707 12 C 0.538 3.462 13 O -0.551 6.551 14 C -0.131 4.131 15 S -0.147 6.147 16 C -0.547 4.547 17 H 0.082 0.918 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.997 3.003 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.258 1.258 24 C 0.048 3.952 25 C -0.073 4.073 26 O -0.214 6.214 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.103 0.897 44 H 0.077 0.923 45 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.699 -1.522 17.605 31.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.027 4.027 3 N -0.234 5.234 4 C -0.138 4.138 5 C 0.000 4.000 6 N -0.242 5.242 7 C -0.083 4.083 8 C -0.163 4.163 9 C 0.082 3.918 10 C -0.213 4.213 11 N -0.362 5.362 12 C 0.323 3.677 13 O -0.428 6.428 14 C -0.282 4.282 15 S 0.080 5.920 16 C -0.695 4.695 17 H 0.100 0.900 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.819 3.181 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.182 1.182 24 C -0.080 4.080 25 C -0.144 4.144 26 O -0.101 6.101 27 H 0.122 0.878 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.251 0.749 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -26.915 -0.822 15.301 30.971 hybrid contribution 2.737 -1.087 1.838 3.472 sum -24.178 -1.909 17.139 29.698 Atomic orbital electron populations 1.20478 0.78694 1.06338 1.05826 1.27218 0.98025 0.78189 0.99276 1.70327 1.02501 1.31256 1.19353 1.21728 0.93115 0.92980 1.05959 1.20514 0.91692 0.97888 0.89862 1.64750 1.38825 1.07559 1.13057 1.23197 0.97093 0.93352 0.94618 1.22772 0.99243 0.96278 0.97976 1.21113 0.80016 0.95312 0.95361 1.22137 1.02688 0.96810 0.99670 1.46001 1.06740 1.73538 1.09905 1.19944 0.86677 0.75364 0.85684 1.90674 1.81924 1.50354 1.19829 1.23394 0.94913 1.06189 1.03717 1.85554 1.03196 1.93794 1.09477 1.23211 0.93661 1.56681 0.95923 0.90002 1.26107 1.03802 0.94001 0.95213 1.70178 1.32324 1.47038 1.05205 0.84976 0.75973 0.78916 0.78258 1.19328 1.20344 1.18215 1.23107 0.92164 0.96996 0.95699 1.25298 0.85404 0.96267 1.07401 1.84455 1.17385 1.38196 1.70023 0.87809 0.87489 0.87384 0.88668 0.90541 0.92365 0.90545 0.90793 0.92394 0.91578 0.93241 0.90518 0.74932 0.87515 0.87500 0.92024 0.87927 0.90530 0.74578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 71.24 0.75 0.34 16 2 C 0.18 3.06 8.34 88.34 0.74 3.79 16 3 N -0.50 -10.78 11.29 -291.99 -3.30 -14.07 16 4 C -0.02 -0.34 6.24 41.26 0.26 -0.08 16 5 C 0.13 1.92 5.25 85.56 0.45 2.37 16 6 N -0.52 -9.19 5.23 -887.57 -4.65 -13.83 16 7 C 0.04 0.85 6.04 86.65 0.52 1.38 16 8 C -0.12 -3.05 5.85 31.80 0.19 -2.86 16 9 C 0.17 3.73 0.94 4.48 0.00 3.73 16 10 C -0.15 -3.84 8.15 71.98 0.59 -3.26 16 11 N -0.71 -16.77 5.15 -418.95 -2.16 -18.93 16 12 C 0.54 18.82 7.04 87.66 0.62 19.44 16 13 O -0.55 -24.11 12.75 -3.04 -0.04 -24.14 16 14 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 15 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 16 C -0.55 -30.97 9.50 67.95 0.65 -30.32 16 17 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 18 C 0.01 0.77 5.49 84.86 0.47 1.23 16 19 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 20 Si 1.00 43.33 29.55 68.60 2.03 45.35 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 C 0.05 0.76 6.12 86.44 0.53 1.29 16 25 C -0.07 -1.13 11.99 66.93 0.80 -0.33 16 26 O -0.21 -3.76 10.78 -3.72 -0.04 -3.80 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 31 H 0.08 0.82 7.83 -2.39 -0.02 0.80 16 32 H 0.06 0.97 7.81 -2.39 -0.02 0.95 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.07 1.92 7.85 -2.39 -0.02 1.90 16 35 H 0.06 1.78 6.81 -2.39 -0.02 1.76 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.63 6.03 -2.39 -0.01 1.61 16 38 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 39 H 0.41 6.89 8.09 -92.71 -0.75 6.14 16 40 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 41 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 42 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.10 1.54 7.68 -2.39 -0.02 1.52 16 44 H 0.08 0.87 7.09 -2.39 -0.02 0.86 16 45 H 0.24 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -80.39 384.05 -1.78 -82.16 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.26 Total: 19.82 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 6.99 Total: -7.86 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -9.81 Total: -102.32 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.08 Total: -27.95 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -80.39 -1.78 -82.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699810240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.230 kcal (2) G-P(sol) polarization free energy of solvation -80.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds